Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CCTCRGCCTCCCAAAGTGCTGGGATTACAGG 31 CCTCGGCCTCCCAAAGTGCTGGGATTACAGG
CYYTGACCYCTGACCYYNVV 20 CTCTGACCCCTGACCTCAAC
CAGCCTGGCCAACATRGTGAAA 22 CAGCCTGGCCAACATGGTGAAA
AMAHAAAMAMACAMAM 16 AAATAAAAAAACAAAA
CRTGAGYCACCGCGCC 16 CGTGAGCCACCGCGCC
GGGKSAGGGDSRGGGKSAGKGG 22 GGGTGAGGGTGAGGGTCAGGGG
RAGGTCAGDGG 11 GAGGTCAGGGG
GCAGTGGCRYRATCWYGGCTCACTGCARCCT 31 GCAGTGGCACGATCATGGCTCACTGCAACCT
TATATTTYRKGTACTTTSATATTTTATRTACAGTATATAATAYWHAKTTK 50 TATATTTTATGTACTTTGATATTTTATGTACAGTATATAATATATATTTG
AAACYCTWCWAGAYRTWKRCTTWGGCAARGAWTTCATGACCWRGAMCYC 49 AAACTCTTCTAGACATTGACTTAGGCAAGGATTTCATGACCAAGAACCC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.256 C 0.244 G 0.244 T 0.256


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CRTGAGYCACCGCGCC MEME-5 chr19 - 1443590 1443605 1.85e-10 1.79e-05 CGTGAGCCACCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr19 - 2818733 2818748 1.85e-10 1.79e-05 CGTGAGCCACCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr7 + 6374233 6374248 1.85e-10 1.79e-05 cgtgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr6 + 28898390 28898405 1.85e-10 1.79e-05 cgtgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 34218282 34218297 1.85e-10 1.79e-05 cgtgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 39121857 39121872 1.85e-10 1.79e-05 cgtgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr6 + 30907798 30907813 3.78e-10 3.13e-05 cgtgagtcaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 33172042 33172057 5.71e-10 4.14e-05 catgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr1 - 205266313 205266328 7.73e-10 4.36e-05 CATGAGTCACCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr19 + 34216736 34216751 9.66e-10 4.36e-05 cgtgagccaccgcacc
CRTGAGYCACCGCGCC MEME-5 chr22 - 41672336 41672351 9.66e-10 4.36e-05 CGTGAGCCACCGCACC
CRTGAGYCACCGCGCC MEME-5 chr3 + 48926548 48926563 9.66e-10 4.36e-05 cgtgagccaccgcacc
CRTGAGYCACCGCGCC MEME-5 chr19 + 17308946 17308961 1.16e-09 4.36e-05 cgtgagccactgcgcc
CRTGAGYCACCGCGCC MEME-5 chr6 - 31796183 31796198 1.16e-09 4.36e-05 CGTGAGCCACTGCGCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 16862672 16862687 1.35e-09 4.36e-05 CGTGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr19 - 44886443 44886458 1.35e-09 4.36e-05 CGTGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 16545241 16545256 1.35e-09 4.36e-05 cgtgagccaccgtgcc
CRTGAGYCACCGCGCC MEME-5 chr1 + 16627778 16627793 1.35e-09 4.36e-05 cgtgagccaccgtgcc
CRTGAGYCACCGCGCC MEME-5 chr6 + 37104491 37104506 1.96e-09 5.69e-05 catgagccaccgcacc
CRTGAGYCACCGCGCC MEME-5 chr1 - 223840975 223840990 1.96e-09 5.69e-05 CATGAGCCACCGCACC
CRTGAGYCACCGCGCC MEME-5 chr8 - 6266025 6266040 2.36e-09 6.16e-05 CATGAGCCACTGCGCC
CRTGAGYCACCGCGCC MEME-5 chr22 + 23766730 23766745 2.36e-09 6.16e-05 catgagccactgcgcc
CRTGAGYCACCGCGCC MEME-5 chr16 + 3156927 3156942 2.56e-09 6.16e-05 cgtgagccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 39122100 39122115 2.56e-09 6.16e-05 cgtgagccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr20 - 34811972 34811987 2.76e-09 6.16e-05 CATGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr5 + 69521115 69521130 2.76e-09 6.16e-05 catgagccaccgtgcc
CRTGAGYCACCGCGCC MEME-5 chr19 - 39033195 39033210 2.97e-09 6.16e-05 CATGAGTCACCGCACC
CRTGAGYCACCGCGCC MEME-5 chr1 - 233244432 233244447 2.97e-09 6.16e-05 CATGAGTCACCGCACC
CRTGAGYCACCGCGCC MEME-5 chr10 - 70378365 70378380 3.18e-09 6.33e-05 CATGAGTCACTGCGCC
CRTGAGYCACCGCGCC MEME-5 chr8 - 17803546 17803561 3.6e-09 6.33e-05 CATGAGTCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr6 + 28396882 28396897 3.6e-09 6.33e-05 catgagtcaccgtgcc
CRTGAGYCACCGCGCC MEME-5 chr12 + 31078965 31078980 3.6e-09 6.33e-05 catgagtcaccgtgcc
CRTGAGYCACCGCGCC MEME-5 chr8 + 37793388 37793403 3.6e-09 6.33e-05 catgagtcaccgtgcc
CRTGAGYCACCGCGCC MEME-5 chr19 - 38518651 38518666 4.58e-09 7.39e-05 CGTGAGCCACTGCACC
CRTGAGYCACCGCGCC MEME-5 chr1 + 44796848 44796863 4.58e-09 7.39e-05 catgagtcaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr9 - 75877381 75877396 4.58e-09 7.39e-05 CGTGAGCCACTGCACC
CRTGAGYCACCGCGCC MEME-5 chr6 - 43322281 43322296 5.58e-09 8.76e-05 CGTGAGTCACTGCACC
CRTGAGYCACCGCGCC MEME-5 chr17 - 46280095 46280110 6.56e-09 9.83e-05 TGTGAGCCACCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr19 - 43572526 43572541 6.77e-09 9.83e-05 CATGAGCCACTGCACC
CRTGAGYCACCGCGCC MEME-5 chr17 + 39486230 39486245 6.77e-09 9.83e-05 catgagccactgcacc
CRTGAGYCACCGCGCC MEME-5 chrX - 136058572 136058587 7.38e-09 0.000104 CGTGAGCCACCACACC
CRTGAGYCACCGCGCC MEME-5 chr20 - 62794895 62794910 8.79e-09 0.000116 CTTGAGCCACCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr7 + 6373912 6373927 8.79e-09 0.000116 cttgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr7 + 6373912 6373927 8.79e-09 0.000116 cttgagccaccgcgcc
CRTGAGYCACCGCGCC MEME-5 chr1 - 45556912 45556927 1.14e-08 0.000148 CATGAGTCACTGTGCC
CRTGAGYCACCGCGCC MEME-5 chr17 - 76668372 76668387 1.2e-08 0.000152 CGTGAGCCACAGCGCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 67400228 67400243 1.25e-08 0.000153 CGTGAGTCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr17 + 2626831 2626846 1.27e-08 0.000153 cgtgagccaccccgcc
CRTGAGYCACCGCGCC MEME-5 chrX - 73820397 73820412 1.37e-08 0.000159 CATGAGCCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr9 + 130170298 130170313 1.37e-08 0.000159 catgagccaccatgcc
CRTGAGYCACCGCGCC MEME-5 chr6 - 42674486 42674501 1.49e-08 0.000166 CATGAGTCACCACACC
CRTGAGYCACCGCGCC MEME-5 chr3 + 48926828 48926843 1.49e-08 0.000166 catgagtcaccacacc
CRTGAGYCACCGCGCC MEME-5 chr1 + 28373704 28373719 1.71e-08 0.000184 catgagtcaccatgcc
CRTGAGYCACCGCGCC MEME-5 chr20 + 46085305 46085320 1.71e-08 0.000184 catgagtcaccatgcc
CRTGAGYCACCGCGCC MEME-5 chr21 - 26841210 26841225 2.03e-08 0.000215 TGTGAGCCACCGCACC
CRTGAGYCACCGCGCC MEME-5 chr19 - 34216984 34216999 2.38e-08 0.000246 TGTGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr17 - 46101474 46101489 2.71e-08 0.000275 CCTGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr19 - 39918991 39919006 2.75e-08 0.000275 TGTGAGTCACTGCGCC
CRTGAGYCACCGCGCC MEME-5 chr11 - 65508225 65508240 2.87e-08 0.000283 CTTGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 161115342 161115357 2.98e-08 0.000288 cgtgagccacggcacc
CRTGAGYCACCGCGCC MEME-5 chr6 + 43322078 43322093 3.47e-08 0.000331 catgagccactacacc
CRTGAGYCACCGCGCC MEME-5 chr18 + 62890544 62890559 3.6e-08 0.000337 cgtgagccactccgcc
CRTGAGYCACCGCGCC MEME-5 chr21 - 43857619 43857634 4.2e-08 0.000387 CATGAGTCACTACACC
CRTGAGYCACCGCGCC MEME-5 chr16 + 28087113 28087128 5.45e-08 0.000494 tgtgagccactgcacc
CRTGAGYCACCGCGCC MEME-5 chr16 + 10739004 10739019 5.61e-08 0.000501 catgagtcatcacgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 47253585 47253600 6.34e-08 0.000557 catgagtcaccgcacT
CRTGAGYCACCGCGCC MEME-5 chr11 + 14359852 14359867 6.5e-08 0.000563 tgtgagtcactgcacc
CRTGAGYCACCGCGCC MEME-5 chr9 + 131408997 131409012 6.68e-08 0.000564 catgagtcactgcgct
CRTGAGYCACCGCGCC MEME-5 chr20 + 34391031 34391046 6.7e-08 0.000564 agtgagtcaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr18 + 50870348 50870363 7.38e-08 0.000612 tgtgagtcactgtgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 48961365 48961380 8.71e-08 0.000702 tgtgagccaccatgcc
CRTGAGYCACCGCGCC MEME-5 chr10 - 70378509 70378524 8.71e-08 0.000702 TGTGAGCCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr6 + 31246083 31246098 1.38e-07 0.00108 catgagccactgtgct
CRTGAGYCACCGCGCC MEME-5 chr17 - 59785396 59785411 1.38e-07 0.00108 CATGAGTCATCATGCC
CRTGAGYCACCGCGCC MEME-5 chr20 + 51961106 51961121 1.4e-07 0.00108 cgtgagtcatcgcagc
CRTGAGYCACCGCGCC MEME-5 chr1 + 28373568 28373583 1.69e-07 0.00129 cgtcagccatcacgcc
CRTGAGYCACCGCGCC MEME-5 chr5 + 76585792 76585807 2e-07 0.0015 cgtgagccaccgcccc
CRTGAGYCACCGCGCC MEME-5 chr17 + 39486544 39486559 2.16e-07 0.00161 catgagtcaccatgct
CRTGAGYCACCGCGCC MEME-5 chr1 + 16862564 16862579 2.37e-07 0.00172 CGTCAGCGACCGCGGC
CRTGAGYCACCGCGCC MEME-5 chr1 - 16545349 16545364 2.37e-07 0.00172 CGTCAGCGACCGCGGC
CRTGAGYCACCGCGCC MEME-5 chr19 - 47230201 47230216 2.75e-07 0.00197 CGTGAGTCCCCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr11 - 65442605 65442620 2.95e-07 0.00209 CGTGAGCCACCATACT
CRTGAGYCACCGCGCC MEME-5 chr16 - 15591315 15591330 4.78e-07 0.00335 CGTGAGCCACCGTGTC
CRTGAGYCACCGCGCC MEME-5 chrX - 73820262 73820277 4.96e-07 0.00343 CGGGAGCCACCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr6 - 42674619 42674634 7.7e-07 0.00514 CATGTGCCACCACGCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 45557047 45557062 7.7e-07 0.00514 CATGTGCCACCACGCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 205266450 205266465 7.7e-07 0.00514 CATGAGCCGCCACGCC
CRTGAGYCACCGCGCC MEME-5 chr6 + 28898568 28898583 8.17e-07 0.00539 catgagccatcacact
CRTGAGYCACCGCGCC MEME-5 chr19 - 34217116 34217131 1.12e-06 0.00729 CGTGTGCCACCACACC
CRTGAGYCACCGCGCC MEME-5 chrX + 23786584 23786599 1.13e-06 0.00729 catgtgccaccgtacc
CRTGAGYCACCGCGCC MEME-5 chr6 + 11095630 11095645 1.2e-06 0.00765 catgagtcactgcatc
CRTGAGYCACCGCGCC MEME-5 chr11 - 65442737 65442752 1.25e-06 0.00787 CGTGCGCCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 27875257 27875272 1.35e-06 0.0084 catgagccaccattcc
CRTGAGYCACCGCGCC MEME-5 chr9 + 131408863 131408878 1.41e-06 0.00873 catgtgccaccacacc
CRTGAGYCACCGCGCC MEME-5 chr12 - 112220654 112220669 1.53e-06 0.00938 CATGTGCCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr12 + 30706495 30706510 1.69e-06 0.0102 cgtaagccactgtacc
CRTGAGYCACCGCGCC MEME-5 chr19 + 4671077 4671092 1.77e-06 0.0106 tgtgagtcatcacgct
CRTGAGYCACCGCGCC MEME-5 chr19 + 17308812 17308827 2.05e-06 0.0121 cgtccgccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr19 + 35385952 35385967 2.1e-06 0.0123 cctgagccactgcgtc
CRTGAGYCACCGCGCC MEME-5 chr1 - 39262124 39262139 2.17e-06 0.0126 TGTGAGCCATTGCACT
CRTGAGYCACCGCGCC MEME-5 chr19 + 1068523 1068538 2.78e-06 0.016 CCTGAGCCGCCACGCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 225655596 225655611 3.37e-06 0.0192 CTTGAGTCATTACAGC
CRTGAGYCACCGCGCC MEME-5 chr19 - 38518786 38518801 3.56e-06 0.0201 CGTCTGCCACCACACC
CRTGAGYCACCGCGCC MEME-5 chr9 + 131409166 131409181 3.79e-06 0.0212 catgtgccacgacgcc
CRTGAGYCACCGCGCC MEME-5 chr17 - 77289146 77289161 4.12e-06 0.0228 ATTGAGCCACCACACT
CRTGAGYCACCGCGCC MEME-5 chr10 + 24892265 24892280 4.23e-06 0.0231 catgagccattgcaac
CRTGAGYCACCGCGCC MEME-5 chr6 - 32981558 32981573 4.68e-06 0.0254 AATGAGCCACAGTACT
CRTGAGYCACCGCGCC MEME-5 chr5 + 73591880 73591895 5.33e-06 0.0286 tatgaatcactgtgcc
CRTGAGYCACCGCGCC MEME-5 chr1 + 227934949 227934964 5.58e-06 0.0292 CCTGAGTCACAGCCCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 227934981 227934996 5.58e-06 0.0292 CCTGAGTCACAGCCCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 227935106 227935121 5.58e-06 0.0292 CCTGAGTCACAGCCCC
CRTGAGYCACCGCGCC MEME-5 chr13 + 112213661 112213676 6.02e-06 0.0312 tgtcagtcactgcccc
CRTGAGYCACCGCGCC MEME-5 chr1 + 146036255 146036270 6.8e-06 0.0349 cgtgagctaccatgct
CRTGAGYCACCGCGCC MEME-5 chrX + 23786719 23786734 6.95e-06 0.0354 ggtcagccacagcacc
CRTGAGYCACCGCGCC MEME-5 chr1 + 44796927 44796942 7.24e-06 0.0366 catgactcactgtagc
CRTGAGYCACCGCGCC MEME-5 chr7 - 133492268 133492283 8.66e-06 0.0433 AATGAGTCACCATGTC
CRTGAGYCACCGCGCC MEME-5 chr6 - 31777354 31777369 8.86e-06 0.044 CCTGAGTCACGCTGCT
CRTGAGYCACCGCGCC MEME-5 chr1 - 225997853 225997868 9.23e-06 0.0454 CTTGAGCCACTCCTCC
CRTGAGYCACCGCGCC MEME-5 chr19 + 47253448 47253463 1.07e-05 0.0523 catgagccactgtatt
CRTGAGYCACCGCGCC MEME-5 chr4 - 37561892 37561907 1.11e-05 0.0539 AATGAGTCATAGTGCT
CRTGAGYCACCGCGCC MEME-5 chr1 + 1145467 1145482 1.24e-05 0.0595 CATGACTGACCCCACC
CRTGAGYCACCGCGCC MEME-5 chr17 - 37567425 37567440 1.52e-05 0.0724 AATGAGTCAAGGCACC
CRTGAGYCACCGCGCC MEME-5 chr6 - 30231228 30231243 1.58e-05 0.0746 CATCAGTGACCACAAC
CRTGAGYCACCGCGCC MEME-5 chr6 + 30489994 30490009 1.61e-05 0.0755 GGTGAGTGACCCCGGC
CRTGAGYCACCGCGCC MEME-5 chr17 - 33982966 33982981 1.76e-05 0.0819 TGTGAGGCACCATGCT
CRTGAGYCACCGCGCC MEME-5 chr16 + 3157207 3157222 1.86e-05 0.0848 CATGAACCACGACGCT
CRTGAGYCACCGCGCC MEME-5 chr1 + 227935043 227935058 1.86e-05 0.0848 TCTGAGTCACAGCCCC
CRTGAGYCACCGCGCC MEME-5 chr18 - 9705457 9705472 2e-05 0.0906 AATGTGTCACAACGCC
CRTGAGYCACCGCGCC MEME-5 chr17 + 38584720 38584735 2.1e-05 0.0945 CATAAGCCACCAAGCC
CRTGAGYCACCGCGCC MEME-5 chrX - 136058325 136058340 2.16e-05 0.096 CATGCGCCACCAGGCC
CRTGAGYCACCGCGCC MEME-5 chrX - 73819651 73819666 2.17e-05 0.096 CATAAGTCGCCGTGCC
CRTGAGYCACCGCGCC MEME-5 chr19 + 34218147 34218162 2.29e-05 0.0998 catacgccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr11 - 65508053 65508068 2.29e-05 0.0998 CATACGCCACCACGCC
CRTGAGYCACCGCGCC MEME-5 chr19 + 54209675 54209690 2.3e-05 0.0998 ATTGAGCCACAGAGCC
CRTGAGYCACCGCGCC MEME-5 chr19 + 39121724 39121739 2.35e-05 0.101 cacgtgccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr9 + 130170571 130170586 2.37e-05 0.101 catgtgtcaccaagcc
CRTGAGYCACCGCGCC MEME-5 chr6 - 89144472 89144487 2.42e-05 0.103 TTTCAGCCACCATGGT
CRTGAGYCACCGCGCC MEME-5 chr6 - 31959175 31959190 2.48e-05 0.104 CTGGAGCCACAGCAGC
CRTGAGYCACCGCGCC MEME-5 chr4 - 56978358 56978373 2.58e-05 0.108 CAAGGGTCACCACGCC
CRTGAGYCACCGCGCC MEME-5 chr16 + 682144 682159 2.76e-05 0.115 CGTGTGCCCCTGTGCC
CRTGAGYCACCGCGCC MEME-5 chr6 - 31246192 31246207 2.83e-05 0.116 TATGAGTCACCCAAGC
CRTGAGYCACCGCGCC MEME-5 chr19 - 40090943 40090958 2.96e-05 0.121 CAGCGGCCACCGCGCC
CRTGAGYCACCGCGCC MEME-5 chr6 - 28396654 28396669 3.02e-05 0.123 ATTGTGCCACTGTACC
CRTGAGYCACCGCGCC MEME-5 chr17 - 42118001 42118016 3.08e-05 0.124 CTTCAGTCAGTGCAGC
CRTGAGYCACCGCGCC MEME-5 chr20 - 63700025 63700040 3.3e-05 0.132 CGTCAGCCATGGCTGC
CRTGAGYCACCGCGCC MEME-5 chr17 - 62062697 62062712 3.5e-05 0.139 TTTGAGTCACTTCAGC
CRTGAGYCACCGCGCC MEME-5 chr19 + 3339259 3339274 3.58e-05 0.141 catgtgccaccatccc
CRTGAGYCACCGCGCC MEME-5 chr17 + 46279773 46279788 3.65e-05 0.143 catgaaccaccattcc
CRTGAGYCACCGCGCC MEME-5 chr22 + 49967996 49968011 3.74e-05 0.145 AGTGAGCCAGGACGGC
CRTGAGYCACCGCGCC MEME-5 chr1 + 44797005 44797020 3.77e-05 0.145 catgcaccaccacacc
CRTGAGYCACCGCGCC MEME-5 chr1 - 233244569 233244584 3.77e-05 0.145 CATGCACCACCACACC
CRTGAGYCACCGCGCC MEME-5 chr22 + 38924493 38924508 3.79e-05 0.145 gctcagccacagcggc
CRTGAGYCACCGCGCC MEME-5 chr19 - 36070588 36070603 3.87e-05 0.147 AGTGAGTCACAAAGGC
CRTGAGYCACCGCGCC MEME-5 chr1 + 28373434 28373449 3.92e-05 0.148 catgtgccaacatgcc
CRTGAGYCACCGCGCC MEME-5 chr5 - 38807791 38807806 4.05e-05 0.152 TGTGAGTCATACCGGT
CRTGAGYCACCGCGCC MEME-5 chr22 - 49967189 49967204 4.13e-05 0.154 TGTCAGCCAGTCTGCC
CRTGAGYCACCGCGCC MEME-5 chr5 + 125408934 125408949 4.41e-05 0.163 CATCAGCCACTGGGCG
CRTGAGYCACCGCGCC MEME-5 chr20 - 62795199 62795214 4.51e-05 0.166 CGCGAGTCACTGCGGA
CRTGAGYCACCGCGCC MEME-5 chr19 + 35386301 35386316 4.57e-05 0.167 tgtgtgccacttcgcc
CRTGAGYCACCGCGCC MEME-5 chr8 + 143390207 143390222 4.85e-05 0.174 AGTGAGTGACTGTGGA
CRTGAGYCACCGCGCC MEME-5 chr16 - 88809690 88809705 4.89e-05 0.174 TATGAGTGACCACAGG
CRTGAGYCACCGCGCC MEME-5 chr9 + 137197242 137197257 4.93e-05 0.174 cgcccgccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr19 - 1443728 1443743 4.93e-05 0.174 CGCCCGCCACCACGCC
CRTGAGYCACCGCGCC MEME-5 chr8 - 6266159 6266174 4.93e-05 0.174 CGCCCGCCACCACGCC
CRTGAGYCACCGCGCC MEME-5 chr17 - 42117828 42117843 4.95e-05 0.174 CCTGAGCAACCTTGCC
CRTGAGYCACCGCGCC MEME-5 chr16 + 10738869 10738884 5.07e-05 0.177 catgcgcctctgtacc
CRTGAGYCACCGCGCC MEME-5 chr12 - 90065401 90065416 5.19e-05 0.181 TGTGTGTCACCTTGCC
CRTGAGYCACCGCGCC MEME-5 chr6 + 134109651 134109666 5.29e-05 0.183 catgcgccaccaAGGC
CRTGAGYCACCGCGCC MEME-5 chr8 + 143390911 143390926 5.43e-05 0.186 GGTGAGTGACCGTGCA
CRTGAGYCACCGCGCC MEME-5 chr5 + 97838404 97838419 5.63e-05 0.192 TATGAGTCATTCTAGT
CRTGAGYCACCGCGCC MEME-5 chr1 - 155244696 155244711 5.71e-05 0.194 CATGAGTGACCGTCTC
CRTGAGYCACCGCGCC MEME-5 chr21 + 46124830 46124845 5.74e-05 0.194 ACTCAGCCACCCAGCC
CRTGAGYCACCGCGCC MEME-5 chr9 + 137517206 137517221 5.85e-05 0.195 cgtcactcactccact
CRTGAGYCACCGCGCC MEME-5 chr9 + 137518082 137518097 5.85e-05 0.195 cgtcactcactccact
CRTGAGYCACCGCGCC MEME-5 chr20 + 34390895 34390910 5.87e-05 0.195 catccaccaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr6 + 30743111 30743126 5.94e-05 0.196 ACTCGGCCACGGCGCC
CRTGAGYCACCGCGCC MEME-5 chr18 + 50870214 50870229 6.01e-05 0.197 cgcgtgccactccgcc
CRTGAGYCACCGCGCC MEME-5 chr1 - 29251589 29251604 6.04e-05 0.197 CCTCAGTCACAGGAGC
CRTGAGYCACCGCGCC MEME-5 chrX + 73820480 73820495 6.15e-05 0.198 agtgagccaagatggc
CRTGAGYCACCGCGCC MEME-5 chr1 + 146036121 146036136 6.15e-05 0.198 cctgcgctaccacgcc
CRTGAGYCACCGCGCC MEME-5 chr17 + 40314784 40314799 6.36e-05 0.204 GGTGAGTCACTGCCCT
CRTGAGYCACCGCGCC MEME-5 chr19 + 48259859 48259874 6.4e-05 0.204 catgagtcacgtttcc
CRTGAGYCACCGCGCC MEME-5 chr1 - 29251499 29251514 6.54e-05 0.207 CCTCAGCCAGCCTGGC
CRTGAGYCACCGCGCC MEME-5 chr9 - 4904979 4904994 6.84e-05 0.209 TGTCAGTGACAGTAGT
CRTGAGYCACCGCGCC MEME-5 chr19 - 39833427 39833442 6.84e-05 0.209 TGTCACCCACCGGGCC
CRTGAGYCACCGCGCC MEME-5 chr6 - 129183880 129183895 6.84e-05 0.209 TATGAGTCATTGTGTT
CRTGAGYCACCGCGCC MEME-5 chr16 + 683869 683884 6.92e-05 0.209 CGTGAGTCCCTGCAGG
CRTGAGYCACCGCGCC MEME-5 chr8 + 143390053 143390068 6.96e-05 0.209 CTTCAGTGACCACGGG
CRTGAGYCACCGCGCC MEME-5 chr6 - 33409972 33409987 6.98e-05 0.209 CCTCAGCCCCCGCTCC
CRTGAGYCACCGCGCC MEME-5 chr20 + 34812204 34812219 7.05e-05 0.209 attgcgccactgcact
CRTGAGYCACCGCGCC MEME-5 chr11 + 65508147 65508162 7.05e-05 0.209 attgcgccactgcact
CRTGAGYCACCGCGCC MEME-5 chr1 + 205266192 205266207 7.05e-05 0.209 attgcgccactgcact
CRTGAGYCACCGCGCC MEME-5 chr16 - 10739073 10739088 7.05e-05 0.209 ATTGTGCCACTGCACT
CRTGAGYCACCGCGCC MEME-5 chr17 - 39486311 39486326 7.05e-05 0.209 ATTGTGCCACTGCACT
CRTGAGYCACCGCGCC MEME-5 chr3 - 48926600 48926615 7.05e-05 0.209 ATTGCGCCACTGCACT
CRTGAGYCACCGCGCC MEME-5 chr5 - 108765979 108765994 7.05e-05 0.209 ATTGTGCCACTGCACT
CRTGAGYCACCGCGCC MEME-5 chr10 - 118740332 118740347 7.3e-05 0.215 TGTGAGCCACTGCAAA
CRTGAGYCACCGCGCC MEME-5 chr8 + 37793253 37793268 7.52e-05 0.219 cgcccgccaccacacc
CRTGAGYCACCGCGCC MEME-5 chr10 + 4781009 4781024 7.58e-05 0.219 TATGAGTCATCATTCT
CRTGAGYCACCGCGCC MEME-5 chr1 + 41920830 41920845 7.63e-05 0.219 catgaatcacttcagc
CRTGAGYCACCGCGCC MEME-5 chr1 + 225700438 225700453 7.63e-05 0.219 CATGAACCACAATGGT
CRTGAGYCACCGCGCC MEME-5 chr2 + 231713734 231713749 7.63e-05 0.219 AGTCAGTGATTGCCCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 941308 941323 7.76e-05 0.222 CGGCAGCCACCCCAGT
CRTGAGYCACCGCGCC MEME-5 chr1 + 1387208 1387223 7.81e-05 0.222 CACCAGTCACTGCAAC
CRTGAGYCACCGCGCC MEME-5 chr19 - 2272076 2272091 7.99e-05 0.224 CATCTGTCCCTGCACC
CRTGAGYCACCGCGCC MEME-5 chr1 - 205266098 205266113 8.01e-05 0.224 CGCCTGCCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr1 - 225997984 225997999 8.01e-05 0.224 CGCCCGCCACCATGCC
CRTGAGYCACCGCGCC MEME-5 chr22 + 19875796 19875811 8.03e-05 0.224 CTGCAGCCATCCTGCC
CRTGAGYCACCGCGCC MEME-5 chr7 - 5526291 5526306 8.13e-05 0.225 CATGGCTCACTGCAGC
CRTGAGYCACCGCGCC MEME-5 chr15 + 65513356 65513371 8.17e-05 0.225 catgcaccacaacgcc
CRTGAGYCACCGCGCC MEME-5 chr22 - 19177104 19177119 8.17e-05 0.225 GGTGAGCCACTCGACC
CRTGAGYCACCGCGCC MEME-5 chr19 - 1165363 1165378 8.37e-05 0.229 TCTCAGCCACGACGTC
CRTGAGYCACCGCGCC MEME-5 chr8 - 143937733 143937748 8.46e-05 0.231 GGTGAGTGGCTGTGCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 29251367 29251382 8.52e-05 0.231 CAGGGGTCACTGTGGC
CRTGAGYCACCGCGCC MEME-5 chr1 + 144551940 144551955 8.57e-05 0.231 tatGAGCTCCTGCACC
CRTGAGYCACCGCGCC MEME-5 chr19 - 48596624 48596639 8.64e-05 0.232 CCTGAGGGACGCTGCC
CRTGAGYCACCGCGCC MEME-5 chr6 - 133248699 133248714 8.94e-05 0.239 CTTGAGTCATAACCGC
CRTGAGYCACCGCGCC MEME-5 chr8 + 37697857 37697872 9.15e-05 0.242 CGTGGGCGCCTACGCC
CRTGAGYCACCGCGCC MEME-5 chr17 + 48499610 48499625 9.15e-05 0.242 cctgtgccaccacatc
CRTGAGYCACCGCGCC MEME-5 chr1 + 43604537 43604552 9.18e-05 0.242 CATGCTCCACCACGCT
CRTGAGYCACCGCGCC MEME-5 chr1 + 155178849 155178864 9.51e-05 0.25 AGTCAGCGGCCCTGCC
CRTGAGYCACCGCGCC MEME-5 chr1 + 16627404 16627419 9.91e-05 0.259 CCTGAGCCACAGGGCA
CRTGAGYCACCGCGCC MEME-5 chr1 + 227935138 227935153 9.99e-05 0.26 CCTGAGTCACATCCCC

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_5 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif CRTGAGYCACCGCGCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_5 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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