# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018) # host: kadru # when: Mon Jun 11 07:54:41 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.254 C 0.247 G 0.242 T 0.257 MOTIF HRAGGTCA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST HRAGGTCA TGACCTYD 114 13 1.1e-023 3.5e-019 # AGAGGTCA TGACCTCT 41 3 4.4e-010 1.4e-005 # TGAGGTCA TGACCTCA 39 4 9.3e-009 2.9e-004 # AAAGGTCA TGACCTTT 18 1 3.4e-005 1.0e+000 # CAAGGTCA TGACCTTG 21 5 1.1e-003 3.5e+001 # TAAGGTCA TGACCTTA 8 0 3.8e-003 1.2e+002 # CGAGGTCA TGACCTCG 7 0 7.7e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 167 E= 3.5e-019 0.479042 0.203593 0.000000 0.317365 0.311377 0.000000 0.688623 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTGASTCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RTGASTCA TGASTCAY 66 6 7.5e-015 2.3e-010 # GTGACTCA TGAGTCAC 32 1 2.7e-009 8.1e-005 # ATGAGTCA TGACTCAT 34 2 6.3e-009 1.9e-004 # GTGAGTCA TGACTCAC 25 1 3.2e-007 9.7e-003 # ATGACTCA TGAGTCAT 27 2 6.3e-007 1.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 2.3e-010 0.460526 0.000000 0.539474 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.447368 0.552632 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGATTA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGATTA TAATCC 69 10 6.0e-013 1.8e-008 # GGATTA TAATCC 69 10 6.0e-013 1.8e-008 letter-probability matrix: alength= 4 w= 6 nsites= 72 E= 1.8e-008 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTTWGG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACTTWGG CCWAAGT 48 3 4.1e-012 1.3e-007 # ACTTTGG CCAAAGT 38 2 4.3e-010 1.3e-005 # ACTTAGG CCTAAGT 10 1 5.7e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 1.3e-007 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.208333 0.000000 0.000000 0.791667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CWATAAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CWATAAAA TTTTATWG 34 1 6.7e-010 2.0e-005 # CTATAAAA TTTTATAG 17 0 6.8e-006 2.1e-001 # CAATAAAA TTTTATTG 17 1 6.5e-005 2.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.0e-005 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAACAMA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AAAACAMA TKTGTTTT 44 8 1.2e-007 3.5e-003 # AAAACACA TGTGTTTT 18 1 3.4e-005 1.0e+000 # AAAACAAA TTTGTTTT 27 7 3.5e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.5e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.608696 0.391304 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGCYG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGGCYG CRGCCT 105 46 1.7e-007 5.0e-003 # AGGCTG CAGCCT 80 37 1.8e-005 5.5e-001 # AGGCCG CGGCCT 29 10 1.4e-003 4.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 124 E= 5.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.241935 0.000000 0.758065 0.000000 0.000000 1.000000 0.000000 MOTIF AAWTAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AAWTAC GTAWTT 77 30 1.1e-006 3.4e-002 # AAATAC GTATTT 46 18 2.2e-004 6.5e+000 # AATTAC GTAATT 34 13 1.3e-003 3.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 86 E= 3.4e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.546512 0.000000 0.000000 0.453488 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 40.74 seconds