******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:59077961-59078461 1.0000 100 chr6:21749788-21750288 1.0000 100 chr6:683900-684400 1.0000 100 chr5:124655876-124656376 1.0000 100 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chr5:175378371-175378871 1.0000 100 chr19:39412546-39413046 1.0000 100 chr9:85743217-85743717 1.0000 100 chr19:40831776-40832276 1.0000 100 chr1:151281402-151281902 1.0000 100 chr15:65832553-65833053 1.0000 100 chr7:116218169-116218669 1.0000 100 chr19:34134441-34134941 1.0000 100 chr20:31572599-31573099 1.0000 100 chr19:38543974-38544474 1.0000 100 chr8:37302601-37303101 1.0000 100 chr1:232678530-232679030 1.0000 100 chr19:38930028-38930528 1.0000 100 chr4:110904624-110905124 1.0000 100 chr11:73376989-73377489 1.0000 100 chr19:35889351-35889851 1.0000 100 chr17:39769871-39770371 1.0000 100 chr17:21457041-21457541 1.0000 100 chr19:1383494-1383994 1.0000 100 chr10:5548777-5549277 1.0000 100 chr19:8389695-8390195 1.0000 100 chr10:44752825-44753325 1.0000 100 chr19:11344340-11344840 1.0000 100 chr14:103520869-10352136 1.0000 100 chr1:75724547-75725047 1.0000 100 chr19:32972076-32972576 1.0000 100 chr5:179818819-179819319 1.0000 100 chr16:71426541-71427041 1.0000 100 chr10:75379136-75379636 1.0000 100 chrX:48597665-48598165 1.0000 100 chr10:50463964-50464464 1.0000 100 chr6:52243294-52243794 1.0000 100 chr1:234723899-234724399 1.0000 100 chr1:150876709-150877209 1.0000 100 chr9:18976634-18977134 1.0000 100 chr12:114914164-11491466 1.0000 100 chr5:93582547-93583047 1.0000 100 chr4:140756863-140757363 1.0000 100 chr1:16727274-16727774 1.0000 100 chr15:74546040-74546540 1.0000 100 chr1:86774478-86774978 1.0000 100 chr15:71115101-71115601 1.0000 100 chr1:16534892-16535392 1.0000 100 chr3:194134809-194135309 1.0000 100 chr5:17305893-17306393 1.0000 100 chr19:39125802-39126302 1.0000 100 chr17:78558322-78558822 1.0000 100 chr20:48921351-48921851 1.0000 100 chr1:61057583-61058083 1.0000 100 chr1:148264558-148265058 1.0000 100 chr5:124740978-124741478 1.0000 100 chr19:6737913-6738413 1.0000 100 chr5:1801205-1801705 1.0000 100 chr6:24774967-24775467 1.0000 100 chr1:156660096-156660596 1.0000 100 chr1:35769976-35770476 1.0000 100 chr15:70494069-70494569 1.0000 100 chr19:36139805-36140305 1.0000 100 chr12:31749162-31749662 1.0000 100 chr17:82065712-82066212 1.0000 100 chr10:22552798-22553298 1.0000 100 chr16:30698965-30699465 1.0000 100 chr22:50705019-50705519 1.0000 100 chr6:2028598-2029098 1.0000 100 chr5:149551520-149552020 1.0000 100 chr22:46762640-46763140 1.0000 100 chr7:73522253-73522753 1.0000 100 chr5:14156521-14157021 1.0000 100 chr5:352420-352920 1.0000 100 chr22:20117206-20117706 1.0000 100 chr19:40750062-40750562 1.0000 100 chr6:27602218-27602718 1.0000 100 chr10:21525609-21526109 1.0000 100 chr17:7836626-7837126 1.0000 100 chr19:43950925-43951425 1.0000 100 chr2:27890139-27890639 1.0000 100 chr12:123383425-12338392 1.0000 100 chr6:27671963-27672463 1.0000 100 chr1:27348762-27349262 1.0000 100 chr14:20657035-20657535 1.0000 100 chr6:82260178-82260678 1.0000 100 chr2:218568521-218569021 1.0000 100 chr12:51172719-51173219 1.0000 100 chr11:65551585-65552085 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.235 C 0.265 G 0.265 T 0.235 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.235 C 0.265 G 0.265 T 0.235 ******************************************************************************** ******************************************************************************** MOTIF TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 width = 37 sites = 24 llr = 548 E-value = 1.8e-066 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::1::41::::::::::44::::::6::11521::5 pos.-specific C :1:2242::51:1:5:3:115144:::5614:2:211 probability G 1557:5:954:945:5191515:6:a:5131439:9: matrix T 83518:4:5:9:55546:4:435:a:4:35413:8:3 bits 2.1 1.9 ** 1.7 ** 1.5 * ** * ** * * Relative 1.3 * * ** * ** *** Entropy 1.0 * * * ** * * **** *** (32.9 bits) 0.8 * * * ** ** **** ****** *** 0.6 * ******* ******** ********* * **** 0.4 ******************************** **** 0.2 ******************************** **** 0.0 ------------------------------------- Multilevel TGGGTGAGTCTGTGTGTGTGCGTGTGACCTCAGGTGA consensus TT CCT GG GTCTC AATTCC TGTGTGT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------- chr1:61057583-61058083 + 35 4.25e-15 tttcaccatg tgggtcaggctggtcgcgaactcctgacctcaggtga tccactcgcc chr12:10211934-10212434 + 21 8.33e-15 tttctccatg ttggtcaggctggtctcgaactcctgacctcaggtga tccgcccgcc chr15:40092240-40092740 - 3 4.43e-14 CGGGCGCACA AGGGTGTGTGTGTGTGTGTGTGTGTGAGTCTGTGTGT GT chr6:27602218-27602718 + 20 8.82e-14 tttcgccatg ttggccaggctggtctcgaactcctgacctcaggtga tccacctgtc chr11:120346998-12034749 + 63 1.32e-13 tctctctctc tctctctGTCtgtgtgtgtgtgtgtgtgtgtgtgtgt g chr1:100351737-100352237 + 40 1.50e-13 TTTACGAgtg tgtgtgtgtgtgtgtgtgtgtgtgtgtgCGCGCGCGC GCGCCCTACA chr10:101442026-10144252 + 63 2.50e-13 tctctgtctc tgtgtgtatgtgtgtgtgtgtgtgtgtgtgtAAATGA G chr12:57111954-57112454 - 59 3.20e-13 GTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTGTGA TTGCAATGGG chr1:28884847-28885347 - 2 3.20e-13 CAGCCTGATA AGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT G chr19:33274042-33274542 + 62 1.30e-12 CAGgaaggtc tgtgtgagtctgtgtctgtctgtgtgtgcatgtgtgt gt chr5:93582547-93583047 + 30 3.07e-12 CGTAAgtgtg tgtgtgtgtatgtgtgtgtgtgtgtgACCATAGACGA CCCATACTAA chr6:111568260-111568760 + 18 5.65e-12 tgtgtgtgtg tgtgtgtgtgtgtACGTGCACGTGTGTGTTTACGAGA TGCTCTTGAT chr3:194134809-194135309 - 32 6.24e-12 CCGGGCCGGG AGGATGTGTGTGTGCGTGCGTGTGTGAGTGAGTGTGT GTGCGCGCGC chr6:27684095-27684595 + 6 9.22e-12 ccata ttggctagggtggtctggaactcctgacctcaggtga tccgcaagcc chr21:36210036-36210536 - 51 1.23e-11 TTTCATCATG TTGGCCCGGCTGCTCTTGACCTCCTGACCTCAAGTGA TTCACCTGCC chr3:190424480-190424980 - 21 2.55e-11 TTTCGCCATG TTGGCCAGGTTGGTCTCGAACTCCTGACCTCAGGTCA TCCGCCCACA chr6:27671963-27672463 + 38 3.32e-11 tttcaccgtg ttggtcaggctggtctccaacccctgacctcaaatga tccgcccgtt chr15:72107089-72107589 - 38 3.32e-11 TTTCACCATG TTGACCAGGCTGGTCTGGGACTCCTGACCTCAGGTGA TCTGCCTGCC chr19:37595005-37595505 + 14 2.48e-10 tgtgtgcgtg tgtgtgtgggtctgtgcgcgcgcgtgtccgagtgtcc tctgtgggtg chr1:21345612-21346112 + 59 2.48e-10 GTGACCCGGG GCGCTGCAGCTGCTtgtgtgtgtgtgtgtgtgtgtgt gtgtg chr19:36214287-36214787 - 9 4.88e-09 CGGATGCGCC GTTCTGAATGTGTCTTTGTGGCTGTGTGGCTGGGTGT GGGTGTCT chr19:36604677-36605177 - 49 6.44e-09 TGCCGTTCTG TGGCTGCGTCCGTGTGTGGTGGTGTGAGTGGGCGCGC CTGTGATGGT chr12:122368513-12236901 - 8 8.90e-09 GTAGAGACAG AATTTCAGGCCTGTCTCAAACTCCTGACCTCAAGTGA TCTGCCT chr5:181222180-181222680 + 15 5.32e-08 GACCAAAACg tgtttccgcccggtttcgaaccggggacctttcgcgt gtgaggcgaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:61057583-61058083 4.2e-15 34_[+1]_29 chr12:10211934-10212434 8.3e-15 20_[+1]_43 chr15:40092240-40092740 4.4e-14 2_[-1]_61 chr6:27602218-27602718 8.8e-14 19_[+1]_44 chr11:120346998-12034749 1.3e-13 62_[+1]_1 chr1:100351737-100352237 1.5e-13 39_[+1]_24 chr10:101442026-10144252 2.5e-13 62_[+1]_1 chr12:57111954-57112454 3.2e-13 58_[-1]_5 chr1:28884847-28885347 3.2e-13 1_[-1]_62 chr19:33274042-33274542 1.3e-12 61_[+1]_2 chr5:93582547-93583047 3.1e-12 29_[+1]_34 chr6:111568260-111568760 5.7e-12 17_[+1]_46 chr3:194134809-194135309 6.2e-12 31_[-1]_32 chr6:27684095-27684595 9.2e-12 5_[+1]_58 chr21:36210036-36210536 1.2e-11 50_[-1]_13 chr3:190424480-190424980 2.6e-11 20_[-1]_43 chr6:27671963-27672463 3.3e-11 37_[+1]_26 chr15:72107089-72107589 3.3e-11 37_[-1]_26 chr19:37595005-37595505 2.5e-10 13_[+1]_50 chr1:21345612-21346112 2.5e-10 58_[+1]_5 chr19:36214287-36214787 4.9e-09 8_[-1]_55 chr19:36604677-36605177 6.4e-09 48_[-1]_15 chr12:122368513-12236901 8.9e-09 7_[-1]_56 chr5:181222180-181222680 5.3e-08 14_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW width=37 seqs=24 chr1:61057583-61058083 ( 35) TGGGTCAGGCTGGTCGCGAACTCCTGACCTCAGGTGA 1 chr12:10211934-10212434 ( 21) TTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGA 1 chr15:40092240-40092740 ( 3) AGGGTGTGTGTGTGTGTGTGTGTGTGAGTCTGTGTGT 1 chr6:27602218-27602718 ( 20) TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGA 1 chr11:120346998-12034749 ( 63) TCTCTCTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:100351737-100352237 ( 40) TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGC 1 chr10:101442026-10144252 ( 63) TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTAAATGA 1 chr12:57111954-57112454 ( 59) TGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTGTGA 1 chr1:28884847-28885347 ( 2) AGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr19:33274042-33274542 ( 62) TGTGTGAGTCTGTGTCTGTCTGTGTGTGCATGTGTGT 1 chr5:93582547-93583047 ( 30) TGTGTGTGTATGTGTGTGTGTGTGTGACCATAGACGA 1 chr6:111568260-111568760 ( 18) TGTGTGTGTGTGTACGTGCACGTGTGTGTTTACGAGA 1 chr3:194134809-194135309 ( 32) AGGATGTGTGTGTGCGTGCGTGTGTGAGTGAGTGTGT 1 chr6:27684095-27684595 ( 6) TTGGCTAGGGTGGTCTGGAACTCCTGACCTCAGGTGA 1 chr21:36210036-36210536 ( 51) TTGGCCCGGCTGCTCTTGACCTCCTGACCTCAAGTGA 1 chr3:190424480-190424980 ( 21) TTGGCCAGGTTGGTCTCGAACTCCTGACCTCAGGTCA 1 chr6:27671963-27672463 ( 38) TTGGTCAGGCTGGTCTCCAACCCCTGACCTCAAATGA 1 chr15:72107089-72107589 ( 38) TTGACCAGGCTGGTCTGGGACTCCTGACCTCAGGTGA 1 chr19:37595005-37595505 ( 14) TGTGTGTGGGTCTGTGCGCGCGCGTGTCCGAGTGTCC 1 chr1:21345612-21346112 ( 59) GCGCTGCAGCTGCTTGTGTGTGTGTGTGTGTGTGTGT 1 chr19:36214287-36214787 ( 9) GTTCTGAATGTGTCTTTGTGGCTGTGTGGCTGGGTGT 1 chr19:36604677-36605177 ( 49) TGGCTGCGTCCGTGTGTGGTGGTGTGAGTGGGCGCGC 1 chr12:122368513-12236901 ( 8) AATTTCAGGCCTGTCTCAAACTCCTGACCTCAAGTGA 1 chr5:181222180-181222680 ( 15) TGTTTCCGCCCGGTTTCGAACCGGGGACCTTTCGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 37 n= 38400 bayes= 12.2285 E= 1.8e-066 -49 -1123 -167 168 -249 -167 103 51 -249 -1123 91 96 -149 -67 133 -149 -1123 -35 -1123 175 -1123 65 103 -249 83 -67 -1123 83 -91 -1123 172 -1123 -1123 -267 79 109 -249 91 65 -249 -1123 -108 -1123 190 -1123 -267 179 -249 -1123 -167 50 121 -249 -267 79 96 -1123 79 -1123 121 -1123 -267 103 83 -1123 33 -167 131 -249 -267 179 -1123 68 -108 -167 83 83 -167 79 -249 -1123 91 -167 83 -1123 -108 103 51 -1123 65 -267 121 -1123 50 124 -1123 -1123 -1123 -267 203 -1123 -1123 191 -1123 131 -1123 -1123 83 -1123 91 91 -1123 -1123 114 -167 51 -149 -167 33 109 -149 65 -167 83 109 -1123 65 -149 -49 -67 33 51 -91 -1123 172 -1123 -249 -67 -1123 175 -1123 -167 179 -1123 121 -108 -1123 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 37 nsites= 24 E= 1.8e-066 0.166667 0.000000 0.083333 0.750000 0.041667 0.083333 0.541667 0.333333 0.041667 0.000000 0.500000 0.458333 0.083333 0.166667 0.666667 0.083333 0.000000 0.208333 0.000000 0.791667 0.000000 0.416667 0.541667 0.041667 0.416667 0.166667 0.000000 0.416667 0.125000 0.000000 0.875000 0.000000 0.000000 0.041667 0.458333 0.500000 0.041667 0.500000 0.416667 0.041667 0.000000 0.125000 0.000000 0.875000 0.000000 0.041667 0.916667 0.041667 0.000000 0.083333 0.375000 0.541667 0.041667 0.041667 0.458333 0.458333 0.000000 0.458333 0.000000 0.541667 0.000000 0.041667 0.541667 0.416667 0.000000 0.333333 0.083333 0.583333 0.041667 0.041667 0.916667 0.000000 0.375000 0.125000 0.083333 0.416667 0.416667 0.083333 0.458333 0.041667 0.000000 0.500000 0.083333 0.416667 0.000000 0.125000 0.541667 0.333333 0.000000 0.416667 0.041667 0.541667 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 1.000000 0.000000 0.583333 0.000000 0.000000 0.416667 0.000000 0.500000 0.500000 0.000000 0.000000 0.583333 0.083333 0.333333 0.083333 0.083333 0.333333 0.500000 0.083333 0.416667 0.083333 0.416667 0.500000 0.000000 0.416667 0.083333 0.166667 0.166667 0.333333 0.333333 0.125000 0.000000 0.875000 0.000000 0.041667 0.166667 0.000000 0.791667 0.000000 0.083333 0.916667 0.000000 0.541667 0.125000 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKKGTSWGKSTGKKYKYGWRYKYSTGWSYKYRNGTGW MEME-1 regular expression -------------------------------------------------------------------------------- T[GT][GT]G[TC][GC][AT]G[TG][CG]TG[TG][GT][TC][GT][TC]G[TA][GA][CT][GT][TC][GC]TG[AT][CG][CT][TG][CT][AG][GT]GTG[AT] -------------------------------------------------------------------------------- Time 418.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGTCA MEME-2 width = 7 sites = 109 llr = 1029 E-value = 1.0e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::a pos.-specific C :::::a: probability G :9:a::: matrix T a1::a:: bits 2.1 * * * * 1.9 * ***** 1.7 * ***** 1.5 ******* Relative 1.3 ******* Entropy 1.0 ******* (13.6 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******* 0.0 ------- Multilevel TGAGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------- chr19:40750062-40750562 + 26 5.68e-05 AGCTGACCTT TGAGTCA GAGGTCAAGA chr12:31749162-31749662 + 5 5.68e-05 cggt tgagtca gttcctttgt chr19:36139805-36140305 + 60 5.68e-05 AGTTGCGGCC TGAGTCA CCGGCCCCGC chr1:156660096-156660596 + 23 5.68e-05 CTGGGGGCTG TGAGTCA GCGGAGGTTG chr15:74546040-74546540 + 54 5.68e-05 TACCGGCCGC TGAGTCA GCTCATAGCA chr12:114914164-11491466 + 90 5.68e-05 TATGATCCAG TGAGTCA TATC chr5:179818819-179819319 - 90 5.68e-05 GCAG TGAGTCA GCGTCCCATG chr19:11344340-11344840 + 91 5.68e-05 CCAGCTCAGC TGAGTCA CCA chr17:39769871-39770371 - 45 5.68e-05 TCATACACAT TGAGTCA TCGTGTCTAC chr19:38543974-38544474 + 6 5.68e-05 TCTGA TGAGTCA TCGCAGATGT chr19:40920932-40921432 + 65 5.68e-05 GGGTAAACAC TGAGTCA CTGTGTGTAA chr6:90368929-90369429 - 49 5.68e-05 AGTTGCTGAA TGAGTCA CCACCTTGAG chr7:101138373-101138873 - 60 5.68e-05 AATGCGGCTG TGAGTCA CCCTGTAATT chr1:155000886-155001386 + 21 5.68e-05 GCCCCGAGGC TGAGTCA CGGCCCGGCG chr15:67792434-67792934 + 4 5.68e-05 TTC TGAGTCA CCCTGCAGTC chr6:111568260-111568760 - 93 5.68e-05 C TGAGTCA CCCATTCCAG chr19:4575291-4575791 + 64 5.68e-05 CAAGTCCTGG TGAGTCA GGGCTCAGGA chr13:87123912-87124412 + 37 5.68e-05 tgtaaccaca tgagtca ccatttataa chr7:74079297-74079797 - 79 5.68e-05 GATTACAGTG TGAGTCA CCACTCCCGG chr1:80054092-80054592 - 6 5.68e-05 CCAAACTCGC TGAGTCA TGCTG chr15:58332053-58332553 - 89 5.68e-05 AGTGG TGAGTCA CGCTTCGTCA chr1:28884847-28885347 + 68 5.68e-05 CTGGCACTGC TGAGTCA CCCACAGGCA chr17:67978495-67978995 - 65 5.68e-05 ATCTAATGTA TGAGTCA TTTTCTTGCT chr3:171192168-171192668 + 82 5.68e-05 TCTCTTCCAG TGAGTCA TGTCTGAAAT chr21:26795942-26796442 - 26 5.68e-05 TCACACAGAA TGAGTCA CTGTTTATTT chr1:228902950-228903450 + 78 5.68e-05 CCAATCCTCA TGAGTCA ACCAGAGAGC chr3:9976982-9977482 + 21 5.68e-05 ACACTTTAGC TGAGTCA CATTTAAAAA chr5:125485095-125485595 - 15 5.68e-05 GCCATTCGTG TGAGTCA CGGAGTGACT chr13:110870153-11087065 - 47 5.68e-05 TGACCAGCGC TGAGTCA GTCTAGGAGC chr19:13846896-13847396 - 16 5.68e-05 GGGTGGGTGG TGAGTCA TTCCTGAGGT chr14:101073135-10107363 - 3 5.68e-05 GGGCTGTGTC TGAGTCA GC chr1:234700136-234700636 - 64 5.68e-05 ATAATGCCTC TGAGTCA TCCATTAACC chr6:149233319-149233819 - 82 5.68e-05 GTCAGATCCA TGAGTCA TTTGGTAAAC chr12:124518911-12451941 - 83 5.68e-05 GACTTGTCTC TGAGTCA CACAGCTAAT chr8:125430002-125430502 + 81 5.68e-05 GTATACAGCG TGAGTCA CCaggaggcg chr6:47134639-47135139 - 21 5.68e-05 TACCTTGGTG TGAGTCA TTTCCTGAGA chr22:40711468-40711968 + 35 5.68e-05 tacagagaca tgagtca tcgagaggct chr22:49970633-49971133 - 83 5.68e-05 GAAGGGAGGG TGAGTCA CGCGGTGGCA chrX:38061250-38061750 - 76 5.68e-05 GATTAGAGAG TGAGTCA CCTTCTGACT chr4:1043527-1044027 - 36 5.68e-05 GTGATGGGTG TGAGTCA TCACTCGCGG chr20:50165935-50166435 - 65 5.68e-05 CAAGCACGCA TGAGTCA GAAGCAGTTA chr1:183032411-183032911 + 58 5.68e-05 attataggca tgagtca ccatgcctgg chr12:121799839-12180033 + 64 5.68e-05 CGGGGGTGGC TGAGTCA GAAGGTTCAA chr1:235504713-235505213 - 57 5.68e-05 TAATCCCTGA TGAGTCA CCGCTCCAGG chr19:50896568-50897068 - 51 5.68e-05 CCACATTGTA TGAGTCA CCCTGCAGCT chr22:24727092-24727592 + 15 5.68e-05 GTTTTCCAAA TGAGTCA TTTGtaatta chr1:183060408-183060908 - 17 5.68e-05 ATGATAATTA TGAGTCA GACATGTAAA chr15:71747481-71747981 - 47 5.68e-05 GGTTTGTTTC TGAGTCA TAAAGTTTTG chr3:182365135-182365635 - 47 5.68e-05 TCTGTTTTAA TGAGTCA CATTCACGCT chr1:153566465-153566965 - 29 5.68e-05 GAACCTCGGG TGAGTCA CTTAGGGCTG chr7:80876852-80877352 + 67 5.68e-05 AGTTTGCTTC TGAGTCA GCCTTGTAAA chr21:34845670-34846170 + 29 5.68e-05 TAACACAGAA TGAGTCA AACAGTATTA chr17:27353541-27354041 - 67 5.68e-05 GGAAAGGAAA TGAGTCA TCACTCCCTG chr12:122400403-12240090 - 41 5.68e-05 GGAATGCGTG TGAGTCA TCATTCCGTA chr22:19984229-19984729 + 86 5.68e-05 GGCAGGTGCA TGAGTCA GCCAGTGA chr21:36210036-36210536 - 2 5.68e-05 ATTACAGGCA TGAGTCA C chr3:100002792-100003292 - 78 5.68e-05 CCTCAGTATG TGAGTCA CACAGACATC chr1:85297855-85298355 - 52 5.68e-05 TCCATTTAAA TGAGTCA TACCATTAAG chr19:16279154-16279654 + 36 5.68e-05 gatttgtata tgaGTCA ATGTTACACG chr12:68808687-68809187 - 12 5.68e-05 GAGGAAAAGC TGAGTCA ACCTGCCCAC chr5:99020159-99020659 - 14 5.68e-05 TTTTATGTGA TGAGTCA CCACAGTTAC chr2:25078398-25078898 + 78 5.68e-05 GAAGAAAAGA TGAGTCA CTGAAATAAC chr10:72320641-72321141 + 72 5.68e-05 tgtcagggga tgagtca gataacggtg chr16:74577932-74578432 - 59 5.68e-05 TCATCAGTCA TGAGTCA TCACATACTC chr21:17501366-17501866 + 73 5.68e-05 ATGCAAACAT TGAGTCA TCTAATCTGA chr6:158040305-158040805 - 81 5.68e-05 CCTCCCTGAA TGAGTCA GTGGCCTTAT chr19:8240277-8240777 + 92 5.68e-05 GGCGGGTGAG TGAGTCA AT chr6:21748593-21749093 - 66 5.68e-05 AAGAATTTAG TGAGTCA ATAAAATAAA chr18:3409073-3409573 - 59 5.68e-05 ATTACAGGCA TGAGTCA CCGTGCCTGG chr11:129143285-12914378 - 43 5.68e-05 GACTCCCAAG TGAGTCA CCGGCGGGTA chr16:30065243-30065743 + 34 5.68e-05 ACATTCTGGC TGAGTCA CGGCGCCCCA chr22:35364133-35364633 + 87 5.68e-05 ACATAAACAG TGAGTCA TGAATCC chr8:16825898-16826398 + 94 5.68e-05 TTCAAATAGA TGAGTCA chr16:4944730-4945230 + 37 5.68e-05 GGGTCTACGG TGAGTCA TGCTCTGCCT chr1:67700704-67701204 + 2 5.68e-05 A TGAGTCA CCACCATCTA chr20:3811598-3812098 + 71 5.68e-05 TGCCAGGCTC TGAGTCA GCGGGGCCTG chr1:156114059-156114559 + 27 5.68e-05 GGAAGAAGGG TGAGTCA CACTGATGGG chr1:151972959-151973459 - 1 5.68e-05 GGTTAACTGC TGAGTCA chr5:143245928-143246428 - 35 5.68e-05 AGCCACTGTG TGAGTCA TGAGGCCCGA chr2:236078220-236078720 + 58 5.68e-05 aaactgatca tGAGTCA TCCTGCTATG chr5:170861410-170861910 + 43 5.68e-05 GGAAGACTTA TGAGTCA GGGTCCACGG chr17:17913910-17914410 + 20 5.68e-05 ACCCAGGTGG TGAGTCA TTCCCTCTGG chr17:78935931-78936431 - 51 5.68e-05 GGAGTAGCAG TGAGTCA CCACCAACAG chr4:173252263-173252763 - 57 5.68e-05 TACAGAAGTG TGAGTCA TGCCAGCAGC chr22:18057601-18058101 - 77 5.68e-05 AAACTGGACA TGAGTCA CCAGTAAGTT chr1:223707096-223707596 - 64 5.68e-05 AGGATGGTGG TGAGTCA GAAACAGCTG chr17:933375-933875 - 47 5.68e-05 ATAAGCTGTG TGAGTCA TTTGGTGTTG chr5:124629088-124629588 + 25 5.68e-05 GGCCTCTCCA TGAGTCA TCCCTGCTTC chr22:42620763-42621263 - 21 5.68e-05 ACTCATCTGG TGAGTCA GAGTGGCACA chr12:52949686-52950186 + 49 5.68e-05 TGGCTAAGGC TGAGTCA TCTAGGAGTA chr20:51934181-51934681 - 71 5.68e-05 CATGCACCTC TGAGTCA CTTTGTATTG chr2:175805439-175805939 + 66 5.68e-05 tcaataaatg tgagtca tCCTCGTTAA chr4:13640100-13640600 + 85 5.68e-05 gcagatgcag tgagtca tcatgccag chr19:33274042-33274542 - 12 5.68e-05 CAGGCCTGTG TGAGTCA CACCCCACAC chr6:152095074-152095574 + 69 5.68e-05 GACTGTTGGA TGAGTCA TCGGGGGGAG chr3:127525276-127525776 + 40 5.68e-05 cccccatctg tgagtca tcaacatcgt chr7:51606670-51607170 - 9 5.68e-05 TTATGAGGAA TGAGTCA ATACTCAT chr5:14156521-14157021 + 69 1.07e-04 GCCTTGTCAG TTAGTCA TCCAAACAAA chr10:22552798-22553298 - 94 1.07e-04 . TTAGTCA TAGAGTACAT chr17:21457041-21457541 - 94 1.07e-04 . TTAGTCA TCGTGCTGTC chr19:32373686-32374186 + 81 1.07e-04 aaaggcttgc ttagtca ctgggcatga chr5:124661294-124661794 - 79 1.07e-04 GAGAGCACTA TTAGTCA CACTTCATTA chr5:136123163-136123663 + 71 1.07e-04 CACAGAAGCA TTAGTCA TTATACAAAT chr10:35195679-35196179 + 1 1.07e-04 . TTAGTCA GTTCCTTTCC chr4:119730111-119730611 + 24 1.07e-04 ACAACTGCCA TTAGTCA GGCAAAAGCA chr5:37738045-37738545 - 73 1.07e-04 CTTGCATTAC TTAGTCA TCAGCACATG chr4:53943648-53944148 - 11 1.07e-04 GACAGCTTCA TTAGTCA TGACTAGGTA chr21:17454366-17454866 + 37 1.07e-04 GGATGGTCAG TTAGTCA CTGGGTCACA chr5:124655876-124656376 + 56 1.07e-04 AGTGCTGCGA TTAGTCA CCCTGAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40750062-40750562 5.7e-05 25_[+2]_68 chr12:31749162-31749662 5.7e-05 4_[+2]_89 chr19:36139805-36140305 5.7e-05 59_[+2]_34 chr1:156660096-156660596 5.7e-05 22_[+2]_71 chr15:74546040-74546540 5.7e-05 53_[+2]_40 chr12:114914164-11491466 5.7e-05 89_[+2]_4 chr5:179818819-179819319 5.7e-05 89_[-2]_4 chr19:11344340-11344840 5.7e-05 90_[+2]_3 chr17:39769871-39770371 5.7e-05 44_[-2]_49 chr19:38543974-38544474 5.7e-05 5_[+2]_88 chr19:40920932-40921432 5.7e-05 64_[+2]_29 chr6:90368929-90369429 5.7e-05 48_[-2]_45 chr7:101138373-101138873 5.7e-05 59_[-2]_34 chr1:155000886-155001386 5.7e-05 20_[+2]_73 chr15:67792434-67792934 5.7e-05 3_[+2]_90 chr6:111568260-111568760 5.7e-05 92_[-2]_1 chr19:4575291-4575791 5.7e-05 63_[+2]_30 chr13:87123912-87124412 5.7e-05 36_[+2]_57 chr7:74079297-74079797 5.7e-05 78_[-2]_15 chr1:80054092-80054592 5.7e-05 5_[-2]_88 chr15:58332053-58332553 5.7e-05 88_[-2]_5 chr1:28884847-28885347 5.7e-05 67_[+2]_26 chr17:67978495-67978995 5.7e-05 64_[-2]_29 chr3:171192168-171192668 5.7e-05 81_[+2]_12 chr21:26795942-26796442 5.7e-05 25_[-2]_68 chr1:228902950-228903450 5.7e-05 77_[+2]_16 chr3:9976982-9977482 5.7e-05 20_[+2]_73 chr5:125485095-125485595 5.7e-05 14_[-2]_79 chr13:110870153-11087065 5.7e-05 46_[-2]_47 chr19:13846896-13847396 5.7e-05 15_[-2]_78 chr14:101073135-10107363 5.7e-05 2_[-2]_91 chr1:234700136-234700636 5.7e-05 63_[-2]_30 chr6:149233319-149233819 5.7e-05 81_[-2]_12 chr12:124518911-12451941 5.7e-05 82_[-2]_11 chr8:125430002-125430502 5.7e-05 80_[+2]_13 chr6:47134639-47135139 5.7e-05 20_[-2]_73 chr22:40711468-40711968 5.7e-05 34_[+2]_59 chr22:49970633-49971133 5.7e-05 82_[-2]_11 chrX:38061250-38061750 5.7e-05 75_[-2]_18 chr4:1043527-1044027 5.7e-05 35_[-2]_58 chr20:50165935-50166435 5.7e-05 64_[-2]_29 chr1:183032411-183032911 5.7e-05 57_[+2]_36 chr12:121799839-12180033 5.7e-05 63_[+2]_30 chr1:235504713-235505213 5.7e-05 56_[-2]_37 chr19:50896568-50897068 5.7e-05 50_[-2]_43 chr22:24727092-24727592 5.7e-05 14_[+2]_79 chr1:183060408-183060908 5.7e-05 16_[-2]_77 chr15:71747481-71747981 5.7e-05 46_[-2]_47 chr3:182365135-182365635 5.7e-05 46_[-2]_47 chr1:153566465-153566965 5.7e-05 28_[-2]_65 chr7:80876852-80877352 5.7e-05 66_[+2]_27 chr21:34845670-34846170 5.7e-05 28_[+2]_65 chr17:27353541-27354041 5.7e-05 66_[-2]_27 chr12:122400403-12240090 5.7e-05 40_[-2]_53 chr22:19984229-19984729 5.7e-05 85_[+2]_8 chr21:36210036-36210536 5.7e-05 1_[-2]_92 chr3:100002792-100003292 5.7e-05 77_[-2]_16 chr1:85297855-85298355 5.7e-05 51_[-2]_42 chr19:16279154-16279654 5.7e-05 35_[+2]_58 chr12:68808687-68809187 5.7e-05 11_[-2]_82 chr5:99020159-99020659 5.7e-05 13_[-2]_80 chr2:25078398-25078898 5.7e-05 77_[+2]_16 chr10:72320641-72321141 5.7e-05 71_[+2]_22 chr16:74577932-74578432 5.7e-05 58_[-2]_35 chr21:17501366-17501866 5.7e-05 72_[+2]_21 chr6:158040305-158040805 5.7e-05 80_[-2]_13 chr19:8240277-8240777 5.7e-05 91_[+2]_2 chr6:21748593-21749093 5.7e-05 65_[-2]_28 chr18:3409073-3409573 5.7e-05 58_[-2]_35 chr11:129143285-12914378 5.7e-05 42_[-2]_51 chr16:30065243-30065743 5.7e-05 33_[+2]_60 chr22:35364133-35364633 5.7e-05 86_[+2]_7 chr8:16825898-16826398 5.7e-05 93_[+2] chr16:4944730-4945230 5.7e-05 36_[+2]_57 chr1:67700704-67701204 5.7e-05 1_[+2]_92 chr20:3811598-3812098 5.7e-05 70_[+2]_23 chr1:156114059-156114559 5.7e-05 26_[+2]_67 chr1:151972959-151973459 5.7e-05 [-2]_93 chr5:143245928-143246428 5.7e-05 34_[-2]_59 chr2:236078220-236078720 5.7e-05 57_[+2]_36 chr5:170861410-170861910 5.7e-05 42_[+2]_51 chr17:17913910-17914410 5.7e-05 19_[+2]_74 chr17:78935931-78936431 5.7e-05 50_[-2]_43 chr4:173252263-173252763 5.7e-05 56_[-2]_37 chr22:18057601-18058101 5.7e-05 76_[-2]_17 chr1:223707096-223707596 5.7e-05 63_[-2]_30 chr17:933375-933875 5.7e-05 46_[-2]_47 chr5:124629088-124629588 5.7e-05 24_[+2]_69 chr22:42620763-42621263 5.7e-05 20_[-2]_73 chr12:52949686-52950186 5.7e-05 48_[+2]_45 chr20:51934181-51934681 5.7e-05 70_[-2]_23 chr2:175805439-175805939 5.7e-05 65_[+2]_28 chr4:13640100-13640600 5.7e-05 84_[+2]_9 chr19:33274042-33274542 5.7e-05 11_[-2]_82 chr6:152095074-152095574 5.7e-05 68_[+2]_25 chr3:127525276-127525776 5.7e-05 39_[+2]_54 chr7:51606670-51607170 5.7e-05 8_[-2]_85 chr5:14156521-14157021 0.00011 68_[+2]_25 chr10:22552798-22553298 0.00011 93_[-2] chr17:21457041-21457541 0.00011 93_[-2] chr19:32373686-32374186 0.00011 80_[+2]_13 chr5:124661294-124661794 0.00011 78_[-2]_15 chr5:136123163-136123663 0.00011 70_[+2]_23 chr10:35195679-35196179 0.00011 [+2]_93 chr4:119730111-119730611 0.00011 23_[+2]_70 chr5:37738045-37738545 0.00011 72_[-2]_21 chr4:53943648-53944148 0.00011 10_[-2]_83 chr21:17454366-17454866 0.00011 36_[+2]_57 chr5:124655876-124656376 0.00011 55_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGTCA width=7 seqs=109 chr19:40750062-40750562 ( 26) TGAGTCA 1 chr12:31749162-31749662 ( 5) TGAGTCA 1 chr19:36139805-36140305 ( 60) TGAGTCA 1 chr1:156660096-156660596 ( 23) TGAGTCA 1 chr15:74546040-74546540 ( 54) TGAGTCA 1 chr12:114914164-11491466 ( 90) TGAGTCA 1 chr5:179818819-179819319 ( 90) TGAGTCA 1 chr19:11344340-11344840 ( 91) TGAGTCA 1 chr17:39769871-39770371 ( 45) TGAGTCA 1 chr19:38543974-38544474 ( 6) TGAGTCA 1 chr19:40920932-40921432 ( 65) TGAGTCA 1 chr6:90368929-90369429 ( 49) TGAGTCA 1 chr7:101138373-101138873 ( 60) TGAGTCA 1 chr1:155000886-155001386 ( 21) TGAGTCA 1 chr15:67792434-67792934 ( 4) TGAGTCA 1 chr6:111568260-111568760 ( 93) TGAGTCA 1 chr19:4575291-4575791 ( 64) TGAGTCA 1 chr13:87123912-87124412 ( 37) TGAGTCA 1 chr7:74079297-74079797 ( 79) TGAGTCA 1 chr1:80054092-80054592 ( 6) TGAGTCA 1 chr15:58332053-58332553 ( 89) TGAGTCA 1 chr1:28884847-28885347 ( 68) TGAGTCA 1 chr17:67978495-67978995 ( 65) TGAGTCA 1 chr3:171192168-171192668 ( 82) TGAGTCA 1 chr21:26795942-26796442 ( 26) TGAGTCA 1 chr1:228902950-228903450 ( 78) TGAGTCA 1 chr3:9976982-9977482 ( 21) TGAGTCA 1 chr5:125485095-125485595 ( 15) TGAGTCA 1 chr13:110870153-11087065 ( 47) TGAGTCA 1 chr19:13846896-13847396 ( 16) TGAGTCA 1 chr14:101073135-10107363 ( 3) TGAGTCA 1 chr1:234700136-234700636 ( 64) TGAGTCA 1 chr6:149233319-149233819 ( 82) TGAGTCA 1 chr12:124518911-12451941 ( 83) TGAGTCA 1 chr8:125430002-125430502 ( 81) TGAGTCA 1 chr6:47134639-47135139 ( 21) TGAGTCA 1 chr22:40711468-40711968 ( 35) TGAGTCA 1 chr22:49970633-49971133 ( 83) TGAGTCA 1 chrX:38061250-38061750 ( 76) TGAGTCA 1 chr4:1043527-1044027 ( 36) TGAGTCA 1 chr20:50165935-50166435 ( 65) TGAGTCA 1 chr1:183032411-183032911 ( 58) TGAGTCA 1 chr12:121799839-12180033 ( 64) TGAGTCA 1 chr1:235504713-235505213 ( 57) TGAGTCA 1 chr19:50896568-50897068 ( 51) TGAGTCA 1 chr22:24727092-24727592 ( 15) TGAGTCA 1 chr1:183060408-183060908 ( 17) TGAGTCA 1 chr15:71747481-71747981 ( 47) TGAGTCA 1 chr3:182365135-182365635 ( 47) TGAGTCA 1 chr1:153566465-153566965 ( 29) TGAGTCA 1 chr7:80876852-80877352 ( 67) TGAGTCA 1 chr21:34845670-34846170 ( 29) TGAGTCA 1 chr17:27353541-27354041 ( 67) TGAGTCA 1 chr12:122400403-12240090 ( 41) TGAGTCA 1 chr22:19984229-19984729 ( 86) TGAGTCA 1 chr21:36210036-36210536 ( 2) TGAGTCA 1 chr3:100002792-100003292 ( 78) TGAGTCA 1 chr1:85297855-85298355 ( 52) TGAGTCA 1 chr19:16279154-16279654 ( 36) TGAGTCA 1 chr12:68808687-68809187 ( 12) TGAGTCA 1 chr5:99020159-99020659 ( 14) TGAGTCA 1 chr2:25078398-25078898 ( 78) TGAGTCA 1 chr10:72320641-72321141 ( 72) TGAGTCA 1 chr16:74577932-74578432 ( 59) TGAGTCA 1 chr21:17501366-17501866 ( 73) TGAGTCA 1 chr6:158040305-158040805 ( 81) TGAGTCA 1 chr19:8240277-8240777 ( 92) TGAGTCA 1 chr6:21748593-21749093 ( 66) TGAGTCA 1 chr18:3409073-3409573 ( 59) TGAGTCA 1 chr11:129143285-12914378 ( 43) TGAGTCA 1 chr16:30065243-30065743 ( 34) TGAGTCA 1 chr22:35364133-35364633 ( 87) TGAGTCA 1 chr8:16825898-16826398 ( 94) TGAGTCA 1 chr16:4944730-4945230 ( 37) TGAGTCA 1 chr1:67700704-67701204 ( 2) TGAGTCA 1 chr20:3811598-3812098 ( 71) TGAGTCA 1 chr1:156114059-156114559 ( 27) TGAGTCA 1 chr1:151972959-151973459 ( 1) TGAGTCA 1 chr5:143245928-143246428 ( 35) TGAGTCA 1 chr2:236078220-236078720 ( 58) TGAGTCA 1 chr5:170861410-170861910 ( 43) TGAGTCA 1 chr17:17913910-17914410 ( 20) TGAGTCA 1 chr17:78935931-78936431 ( 51) TGAGTCA 1 chr4:173252263-173252763 ( 57) TGAGTCA 1 chr22:18057601-18058101 ( 77) TGAGTCA 1 chr1:223707096-223707596 ( 64) TGAGTCA 1 chr17:933375-933875 ( 47) TGAGTCA 1 chr5:124629088-124629588 ( 25) TGAGTCA 1 chr22:42620763-42621263 ( 21) TGAGTCA 1 chr12:52949686-52950186 ( 49) TGAGTCA 1 chr20:51934181-51934681 ( 71) TGAGTCA 1 chr2:175805439-175805939 ( 66) TGAGTCA 1 chr4:13640100-13640600 ( 85) TGAGTCA 1 chr19:33274042-33274542 ( 12) TGAGTCA 1 chr6:152095074-152095574 ( 69) TGAGTCA 1 chr3:127525276-127525776 ( 40) TGAGTCA 1 chr7:51606670-51607170 ( 9) TGAGTCA 1 chr5:14156521-14157021 ( 69) TTAGTCA 1 chr10:22552798-22553298 ( 94) TTAGTCA 1 chr17:21457041-21457541 ( 94) TTAGTCA 1 chr19:32373686-32374186 ( 81) TTAGTCA 1 chr5:124661294-124661794 ( 79) TTAGTCA 1 chr5:136123163-136123663 ( 71) TTAGTCA 1 chr10:35195679-35196179 ( 1) TTAGTCA 1 chr4:119730111-119730611 ( 24) TTAGTCA 1 chr5:37738045-37738545 ( 73) TTAGTCA 1 chr4:53943648-53944148 ( 11) TTAGTCA 1 chr21:17454366-17454866 ( 37) TTAGTCA 1 chr5:124655876-124656376 ( 56) TTAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 56400 bayes= 9.59171 E= 1.0e-059 -1341 -1341 -1341 209 -1341 -1341 175 -109 209 -1341 -1341 -1341 -1341 -1341 191 -1341 -1341 -1341 -1341 209 -1341 191 -1341 -1341 209 -1341 -1341 -1341 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 109 E= 1.0e-059 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.889908 0.110092 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCA MEME-2 regular expression -------------------------------------------------------------------------------- TGAGTCA -------------------------------------------------------------------------------- Time 786.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGGTCAGRGGTCAS MEME-3 width = 15 sites = 50 llr = 619 E-value = 1.5e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 14::::926::::81 pos.-specific C 111:18:::::1a:3 probability G 859a11183a91:15 matrix T ::::8:::::18:11 bits 2.1 1.9 * 1.7 * * * * 1.5 ** * ** * Relative 1.3 ** * **** Entropy 1.0 ************ (17.9 bits) 0.8 * ************ 0.6 ************** 0.4 ************** 0.2 *************** 0.0 --------------- Multilevel GGGGTCAGAGGTCAG consensus A G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr22:46762640-46763140 + 42 1.22e-09 gtcggggtca ggggtcagaggtcag gTGGCCGCGT chr7:4641734-4642234 + 54 2.31e-09 AGTGGGGTCG GAGGTCAGAGGTCAG CGGGCGCGGG chr20:63968840-63969340 + 7 2.31e-09 AGAGCT GAGGTCAGAGGTCAG GACAGTCACT chr12:131929275-13192977 + 24 7.22e-09 CGGGGCCTGA GAGGTCAGGGGTCAG CAGGAGTGAG chr18:56651361-56651861 + 76 7.22e-09 CTGCACCGTG GAGGTCAGGGGTCAG GGGTCAAAGG chr16:689436-689936 + 20 7.22e-09 CACAGGTGAT GAGGTCAGGGGTCAG GAGGTCAGTG chr1:27348762-27349262 - 37 1.08e-08 AGGTCATATT GGGGTCAGAGGTCAT AGGGCTCCAG chr11:62771363-62771863 - 49 1.20e-08 GCGGGGGGAG GAGGTCAGGGGTCAC TGAACTTGGG chr2:218568521-218569021 + 81 2.06e-08 GGTGGGGTCA GGGGTGAGAGGTCAG AGGGC chr22:50705019-50705519 - 85 2.91e-08 A GGGGTCAGGGGTCAA AGGCCTCAGG chr19:39125802-39126302 + 6 2.91e-08 CCGCC GGGGTCAAAGGTCAC TGGTGGAGGG chr1:43389703-43390203 + 4 3.96e-08 AGC GAGGTCAGGGGTCAA GAGTGGAACA chr20:31572599-31573099 + 61 4.78e-08 GGCCATTCAG GAGGTCAGAGTTCAG CTGTTCTTGC chr17:82065712-82066212 + 3 9.69e-08 gc ggggtcggaggtcag aggctgaggt chr6:159726847-159727347 - 32 1.25e-07 GCGGGCCAGC GAGGTCGGAGGTCAG CCCCAGGGCA chr5:170861410-170861910 + 8 2.14e-07 TATTTTG AGGGTCAGGGGTCAA GAGAGCCTTT chr22:20117206-20117706 + 83 2.68e-07 TCCCGCCGCT ggggtcaggggtcga ggt chr7:73522253-73522753 + 3 3.27e-07 AA GAGGTGAAAGGTCAC GTTATGTAAG chr17:7836626-7837126 + 2 3.67e-07 A GGGGTCAAAGGTCTG TGTTAGAGGT chr1:155017246-155017746 + 19 3.67e-07 CTCCCTCCCC GGGGCCAGAGGGCAG GGCGGGCCGG chr19:6737913-6738413 - 33 4.00e-07 GTCTCAGCCT GGGGTCATAGGTCAT CCTAGGGTCA chr1:236281638-236282138 + 53 4.00e-07 GAGCGACTCC AGGGTCAGAGGTCTG CACTCCAGTC chr11:65551585-65552085 + 30 4.52e-07 GTCAAATATC TGGGTCAGGGGTCAG AGGGTCAGGT chr1:154353334-154353834 - 21 4.95e-07 AGAGTTGATA GGGGTTAGGGGTCAG GTGAGGGGGA chr2:27890139-27890639 - 38 5.49e-07 GGGTCGGGCA AAGGGCAGAGGTCAC CGTCCAGGTT chr22:29388135-29388635 - 35 5.49e-07 GAGAAGAAGT GGGGCGAGGGGTCAG GGGTCCTAGG chr16:23557261-23557761 + 49 8.76e-07 CTCGCCACCA GGGGGCAGAGGCCAG AGAAAGGGCT chr6:43769517-43770017 + 47 8.76e-07 GAGCGGGGAG AAGGCCAGGGGTCAC TCCAGGATTC chr19:35889351-35889851 + 52 9.67e-07 CACACTTGGG GGGATCAAAGGTCAC ACCTTGAGGT chr4:140756863-140757363 - 10 1.06e-06 GGAATGGAGA GGGGGGAGGGGTCAC AAGCGGTGA chr20:38033475-38033975 + 61 1.06e-06 CTCTCGCGGC AGGGTGAGAGGTCGG GTGGCCATCT chr12:95073279-95073779 + 69 1.06e-06 GTATTTCTGG GGGGTCAGAGTTCGT GACCTCTTTC chr19:8389695-8390195 - 71 1.52e-06 ACGTCCCGAT GACGTCATAGGTCAG CGCGCGCTGC chr8:144103761-144104261 + 81 2.17e-06 CTGGTCTTTG GGGGCGAAGGGTCAG GGGGC chr5:98773065-98773565 + 25 2.79e-06 AATTCAAGGA GAGGTCAAAGGCCGG TACCTTTGTA chr7:6009094-6009594 - 3 3.26e-06 ACGCTCAGAA ACCGTCAGAGGTCAC GA chr5:179818819-179819319 + 16 3.83e-06 GCCCAGCCTC CAGGTAAGAGGTCAC TGAGATGGGT chr5:176537567-176538067 - 24 3.83e-06 CCGCTCTCGC CCCGTCAGAGGTCAG ACCCATTGCA chr11:67266005-67266505 + 60 4.50e-06 GTCCAGCATC GAGGGCCGAGGTCAC GGCCAGGGTC chr19:18193240-18193740 - 64 4.50e-06 GTCGGGTGTC GGGATCAAAGGTCGC CCGGGGTGAA chr3:194350277-194350777 - 19 4.50e-06 TTTGAACTCT GAGGGCAGAGGTGAT AATTAAGTCT chr1:207321289-207321789 - 50 5.23e-06 GGTCAGAGGT GCGGTCAGAGGGCTC CGGCGTCATA chr1:211675734-211676234 - 2 7.08e-06 GGTAGTGTGA GGGGCCAGAGTGCAA A chr7:2242008-2242508 + 12 7.08e-06 GGCCTCACTT CCGGTCAGAGGCCAC GCCCCCGGAA chr15:71115101-71115601 + 31 8.21e-06 GTTGACCTCC GGGGTCAGGGGTGCG GATGGGGGCC chr12:120528712-12052921 - 7 8.21e-06 AAAGGTGAAA GGGGCGAGAGGGCGG ATGGGA chr11:76208714-76209214 + 6 8.21e-06 GCTCG CGGGTCAGGGTGCAC GCGCCTCCTG chr1:35769976-35770476 - 30 1.17e-05 TGCTTTGGCA AGTGTCAAAGGTCAA AGACCACGGC chr19:55517234-55517734 - 14 2.00e-05 TTGTCAAGAT GAGGTCGGGGTTCGT CCGGGAGGCC chr19:13036596-13037096 + 43 3.11e-05 TCTGAGCAGT GACGTCAGCGGGCAT GGTACCTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:46762640-46763140 1.2e-09 41_[+3]_44 chr7:4641734-4642234 2.3e-09 53_[+3]_32 chr20:63968840-63969340 2.3e-09 6_[+3]_79 chr12:131929275-13192977 7.2e-09 23_[+3]_62 chr18:56651361-56651861 7.2e-09 75_[+3]_10 chr16:689436-689936 7.2e-09 19_[+3]_66 chr1:27348762-27349262 1.1e-08 36_[-3]_49 chr11:62771363-62771863 1.2e-08 48_[-3]_37 chr2:218568521-218569021 2.1e-08 80_[+3]_5 chr22:50705019-50705519 2.9e-08 84_[-3]_1 chr19:39125802-39126302 2.9e-08 5_[+3]_80 chr1:43389703-43390203 4e-08 3_[+3]_82 chr20:31572599-31573099 4.8e-08 60_[+3]_25 chr17:82065712-82066212 9.7e-08 2_[+3]_83 chr6:159726847-159727347 1.2e-07 31_[-3]_54 chr5:170861410-170861910 2.1e-07 7_[+3]_78 chr22:20117206-20117706 2.7e-07 82_[+3]_3 chr7:73522253-73522753 3.3e-07 2_[+3]_83 chr17:7836626-7837126 3.7e-07 1_[+3]_84 chr1:155017246-155017746 3.7e-07 18_[+3]_67 chr19:6737913-6738413 4e-07 32_[-3]_53 chr1:236281638-236282138 4e-07 52_[+3]_33 chr11:65551585-65552085 4.5e-07 29_[+3]_56 chr1:154353334-154353834 4.9e-07 20_[-3]_65 chr2:27890139-27890639 5.5e-07 37_[-3]_48 chr22:29388135-29388635 5.5e-07 34_[-3]_51 chr16:23557261-23557761 8.8e-07 48_[+3]_37 chr6:43769517-43770017 8.8e-07 46_[+3]_39 chr19:35889351-35889851 9.7e-07 51_[+3]_34 chr4:140756863-140757363 1.1e-06 9_[-3]_76 chr20:38033475-38033975 1.1e-06 60_[+3]_25 chr12:95073279-95073779 1.1e-06 68_[+3]_17 chr19:8389695-8390195 1.5e-06 70_[-3]_15 chr8:144103761-144104261 2.2e-06 80_[+3]_5 chr5:98773065-98773565 2.8e-06 24_[+3]_61 chr7:6009094-6009594 3.3e-06 2_[-3]_83 chr5:179818819-179819319 3.8e-06 15_[+3]_70 chr5:176537567-176538067 3.8e-06 23_[-3]_62 chr11:67266005-67266505 4.5e-06 59_[+3]_26 chr19:18193240-18193740 4.5e-06 63_[-3]_22 chr3:194350277-194350777 4.5e-06 18_[-3]_67 chr1:207321289-207321789 5.2e-06 49_[-3]_36 chr1:211675734-211676234 7.1e-06 1_[-3]_84 chr7:2242008-2242508 7.1e-06 11_[+3]_74 chr15:71115101-71115601 8.2e-06 30_[+3]_55 chr12:120528712-12052921 8.2e-06 6_[-3]_79 chr11:76208714-76209214 8.2e-06 5_[+3]_80 chr1:35769976-35770476 1.2e-05 29_[-3]_56 chr19:55517234-55517734 2e-05 13_[-3]_72 chr19:13036596-13037096 3.1e-05 42_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGGTCAGRGGTCAS width=15 seqs=50 chr22:46762640-46763140 ( 42) GGGGTCAGAGGTCAG 1 chr7:4641734-4642234 ( 54) GAGGTCAGAGGTCAG 1 chr20:63968840-63969340 ( 7) GAGGTCAGAGGTCAG 1 chr12:131929275-13192977 ( 24) GAGGTCAGGGGTCAG 1 chr18:56651361-56651861 ( 76) GAGGTCAGGGGTCAG 1 chr16:689436-689936 ( 20) GAGGTCAGGGGTCAG 1 chr1:27348762-27349262 ( 37) GGGGTCAGAGGTCAT 1 chr11:62771363-62771863 ( 49) GAGGTCAGGGGTCAC 1 chr2:218568521-218569021 ( 81) GGGGTGAGAGGTCAG 1 chr22:50705019-50705519 ( 85) GGGGTCAGGGGTCAA 1 chr19:39125802-39126302 ( 6) GGGGTCAAAGGTCAC 1 chr1:43389703-43390203 ( 4) GAGGTCAGGGGTCAA 1 chr20:31572599-31573099 ( 61) GAGGTCAGAGTTCAG 1 chr17:82065712-82066212 ( 3) GGGGTCGGAGGTCAG 1 chr6:159726847-159727347 ( 32) GAGGTCGGAGGTCAG 1 chr5:170861410-170861910 ( 8) AGGGTCAGGGGTCAA 1 chr22:20117206-20117706 ( 83) GGGGTCAGGGGTCGA 1 chr7:73522253-73522753 ( 3) GAGGTGAAAGGTCAC 1 chr17:7836626-7837126 ( 2) GGGGTCAAAGGTCTG 1 chr1:155017246-155017746 ( 19) GGGGCCAGAGGGCAG 1 chr19:6737913-6738413 ( 33) GGGGTCATAGGTCAT 1 chr1:236281638-236282138 ( 53) AGGGTCAGAGGTCTG 1 chr11:65551585-65552085 ( 30) TGGGTCAGGGGTCAG 1 chr1:154353334-154353834 ( 21) GGGGTTAGGGGTCAG 1 chr2:27890139-27890639 ( 38) AAGGGCAGAGGTCAC 1 chr22:29388135-29388635 ( 35) GGGGCGAGGGGTCAG 1 chr16:23557261-23557761 ( 49) GGGGGCAGAGGCCAG 1 chr6:43769517-43770017 ( 47) AAGGCCAGGGGTCAC 1 chr19:35889351-35889851 ( 52) GGGATCAAAGGTCAC 1 chr4:140756863-140757363 ( 10) GGGGGGAGGGGTCAC 1 chr20:38033475-38033975 ( 61) AGGGTGAGAGGTCGG 1 chr12:95073279-95073779 ( 69) GGGGTCAGAGTTCGT 1 chr19:8389695-8390195 ( 71) GACGTCATAGGTCAG 1 chr8:144103761-144104261 ( 81) GGGGCGAAGGGTCAG 1 chr5:98773065-98773565 ( 25) GAGGTCAAAGGCCGG 1 chr7:6009094-6009594 ( 3) ACCGTCAGAGGTCAC 1 chr5:179818819-179819319 ( 16) CAGGTAAGAGGTCAC 1 chr5:176537567-176538067 ( 24) CCCGTCAGAGGTCAG 1 chr11:67266005-67266505 ( 60) GAGGGCCGAGGTCAC 1 chr19:18193240-18193740 ( 64) GGGATCAAAGGTCGC 1 chr3:194350277-194350777 ( 19) GAGGGCAGAGGTGAT 1 chr1:207321289-207321789 ( 50) GCGGTCAGAGGGCTC 1 chr1:211675734-211676234 ( 2) GGGGCCAGAGTGCAA 1 chr7:2242008-2242508 ( 12) CCGGTCAGAGGCCAC 1 chr15:71115101-71115601 ( 31) GGGGTCAGGGGTGCG 1 chr12:120528712-12052921 ( 7) GGGGCGAGAGGGCGG 1 chr11:76208714-76209214 ( 6) CGGGTCAGGGTGCAC 1 chr1:35769976-35770476 ( 30) AGTGTCAAAGGTCAA 1 chr19:55517234-55517734 ( 14) GAGGTCGGGGTTCGT 1 chr19:13036596-13037096 ( 43) GACGTCAGCGGGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.1435 E= 1.5e-046 -75 -173 152 -355 69 -173 103 -1229 -1229 -173 176 -355 -255 -1229 186 -1229 -1229 -114 -141 173 -355 163 -92 -355 197 -373 -214 -1229 -55 -1229 159 -255 145 -373 36 -1229 -1229 -1229 191 -1229 -1229 -1229 176 -123 -1229 -214 -114 180 -1229 186 -273 -1229 173 -373 -92 -197 -97 8 86 -97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 50 E= 1.5e-046 0.140000 0.080000 0.760000 0.020000 0.380000 0.080000 0.540000 0.000000 0.000000 0.080000 0.900000 0.020000 0.040000 0.000000 0.960000 0.000000 0.000000 0.120000 0.100000 0.780000 0.020000 0.820000 0.140000 0.020000 0.920000 0.020000 0.060000 0.000000 0.160000 0.000000 0.800000 0.040000 0.640000 0.020000 0.340000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.060000 0.120000 0.820000 0.000000 0.960000 0.040000 0.000000 0.780000 0.020000 0.140000 0.060000 0.120000 0.280000 0.480000 0.120000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGTCAGRGGTCAS MEME-3 regular expression -------------------------------------------------------------------------------- G[GA]GGTCAG[AG]GGTCA[GC] -------------------------------------------------------------------------------- Time 1141.41 secs. ******************************************************************************** ******************************************************************************** MOTIF AHAHAMANAHAMAMAA MEME-4 width = 16 sites = 74 llr = 775 E-value = 1.1e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 84939683849585a6 pos.-specific C 12:414:323:3:4:2 probability G :2:::::2::1::1:: matrix T 1213::13:2:12::2 bits 2.1 1.9 * 1.7 * 1.5 * * * * * Relative 1.3 * * * * * * * * Entropy 1.0 * * *** * * * * (15.1 bits) 0.8 * * *** * * * * 0.6 * * *** * ****** 0.4 * * *** ******** 0.2 * ***** ******** 0.0 ---------------- Multilevel AAACAAACAAAAAAAA consensus C T C A C C C sequence T A T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr12:54033423-54033923 + 17 7.88e-09 CATGCGGGGC AAATAAAGAAAAAAAA CCTGCGGCCA chr1:183032411-183032911 - 79 1.07e-08 AAATTC AAAAAAAGAAAAAAAA GAGGCCAGGC chr17:8226713-8227213 + 51 1.89e-08 TCAGAAAACA AAACACACACAAAAAA AAGCCACCCA chr10:112793338-11279383 - 24 4.47e-08 ATGTTCCACA AGACAAACAAACAAAA GAGAGATTAA chr17:59291713-59292213 - 21 7.68e-08 TCTGGTCTCA AAACAAATAAACAAAC CAGGCTGTAA chr7:116218169-116218669 - 81 2.02e-07 GGTC ATATAAAAACAAAAAT CCACCTAACA chr3:190424480-190424980 + 85 2.02e-07 tctactaaaa ataccaaaaaaaaaaa chr1:151494721-151495221 - 49 2.73e-07 AGAAGTGGGC AGAAAAAAAAAAAAAC TTCCCACCCA chr15:81888762-81889262 - 35 2.73e-07 CTAGTCAATA AAACACAACAAAACAA TAAAACTAAG chr10:50463964-50464464 + 19 3.70e-07 ttttttacca caataaaaacaaACAA gagattatcc chr18:3409073-3409573 + 2 3.70e-07 c aaaacaaaacaaaCAA AGCTATAAAA chr12:52903858-52904358 + 81 3.70e-07 aaaaaaaaga aaagaaagaaaaaaaa TCAC chr22:35364133-35364633 + 1 4.95e-07 . aaaaaaaaaaaaagaT CCCATTTCCC chr7:120806678-120807178 + 30 5.66e-07 ATAATGCCCA TAACACATAAAAACAA ATCAGGCATG chr3:12629583-12630083 - 1 5.66e-07 GTCATGCCTT AGAAAAATAAACAAAT chr20:44728750-44729250 + 19 5.66e-07 ctttcactca acataataaaacaaaa ggaatttaat chr6:56529512-56530012 + 80 6.47e-07 AAGTTTAAaa aaataaagaagaaaaa caaaa chr11:73376989-73377489 - 83 1.23e-06 AC ACACACACACACACAC ACTGACACCA chr17:32015515-32016015 - 5 1.23e-06 TCAACCAATG ACACCCATAAACAAAA GTAC chr6:111568260-111568760 - 1 1.23e-06 ACACACACAC ACACACACACACACAC chr12:124518911-12451941 + 1 1.23e-06 . acacacacacacacac acacaGGCCA chr17:56592644-56593144 - 82 1.23e-06 CAC ACACACACACACACAC AGCCCCTACC chr1:167658578-167659078 - 28 1.55e-06 GCAAAACACT AGAGACAAAAAAAAAA TACCATAAAA chr1:232678530-232679030 + 14 1.75e-06 ACGTGCCCTC ATAAAATTATACACAA AGCATGCCTT chr4:119730111-119730611 + 36 2.20e-06 AGTCAGGCAA AAGCAAACATAAACAA TGTTTGTGAA chr6:142885234-142885734 + 48 2.46e-06 CTGAGGTCAC AGATAAAGCTAAACAA CAAGCCGTGG chr11:120346998-12034749 - 10 2.46e-06 AGAGAGAAAG AAAGAAAGAAAAAGAA AGAGAAAGA chr6:158040305-158040805 + 25 2.75e-06 CCCCTCAGTC TATTAAAAAAAAAAAA GGATGTAAGA chr10:125633567-12563406 - 28 2.75e-06 GGAAAGTCAA AGACCAATAAATAAAA AGTTTAATTT chr6:131816139-131816639 + 39 3.07e-06 CCCCCCAAAC AAGAAAAAATAAACAA GAAACCTTTT chr9:18976634-18977134 + 84 3.43e-06 CCCCACAAAA CCACAAACCAAaacaa a chr12:122368513-12236901 + 54 3.43e-06 tctgtctcta ctaaaaatacaaaaat tagtcgggca chr17:43368333-43368833 - 29 3.43e-06 CCAGTCTCTA CTAAAAATACAAAAAT TTAGCCTAAT chr17:71438651-71439151 - 24 3.43e-06 ACACGCAGCT TAACAATCACAAACAA CAGCACAGTT chr12:806357-806857 - 45 3.43e-06 CAACTACGTC ATATCAAAATAAACAT TGCCTGATGA chr19:38543974-38544474 - 84 3.82e-06 A AGATAAAGAAGCAAAA CATTTCCTCA chr8:16825898-16826398 + 3 3.82e-06 ac acacacacacaTTAAA AACCCTCTCC chr15:71747481-71747981 + 26 5.24e-06 catgagtcag aaataaatcagcaaaa ctttatgact chr1:237166688-237167188 - 62 5.24e-06 GCATATTTTC ATTCAAACCCAAACAA AAGCATTTAA chr5:92552240-92552740 + 36 5.79e-06 AAATGTGGGG AAAAAAAGCCACTAAA AATAGCCACA chr8:125430002-125430502 - 59 6.40e-06 CTCACGCTGT ATACACACACACTCAC AGGCCGGGCT chr2:55843132-55843632 - 28 7.07e-06 CTGAATTTCC ACTTACAGATACACAA TGTTTACTTT chr7:83267079-83267579 - 84 7.78e-06 G ATTAACAGAAAAAAAT GTTTAACAAA chr16:74577932-74578432 - 41 7.78e-06 ATGAGTCATC ACATACTCATAATAAA CAGTTTTTCA chr12:95073279-95073779 - 47 8.56e-06 CCCCCCAGAA ATACCCAAACACAGAA AGCTCTCTCC chr10:68153543-68154043 - 50 9.39e-06 GGAAGAAGCC AAACAAACATATGCAA ATAATCTGTT chr1:198763247-198763747 - 63 9.39e-06 ATGGGTCGTC TGACAAACACACAGAA ATGTGATCCA chr10:117148238-11714873 + 31 1.03e-05 TTGAATTCTC AGAAAAAGCTAATAAa attaaggtat chr16:12120443-12120943 - 22 1.13e-05 AGGGACCCAA ACATAAACACAGACAC ACAGCCAGAT chr1:220527661-220528161 + 65 1.13e-05 GGCAAAAACC AAACACGAATAAAAAT AAAACCACCA chr1:85297855-85298355 + 79 1.24e-05 ACGGACTTTT AAAAACACATACACGA GGATTA chr6:168024060-168024560 - 1 1.24e-05 GTGTTTGCAT AAACAAACATGATGAA chr6:11270217-11270717 + 65 1.35e-05 TATCTACCTA AAATAAACAAGCAGAC ACTTTTATGA chr4:71111082-71111582 - 80 1.35e-05 TCTCT AAATAAATAAATAGAG ATTAAGAAGA chr1:61091427-61091927 - 10 1.61e-05 TTACTGTTAC ACACCCACAAAGAAAA CCATTTGCC chr19:16279154-16279654 - 14 1.61e-05 CTCATATACA AATCACATCAAATCAA ATTACAAAGT chr2:177038714-177039214 + 58 1.61e-05 AATATTACGA CCACAATAAAACACAT TCTTATCACT chr11:114159932-11416043 - 15 1.61e-05 GGAGCCAGGA CTACAATAACAAACAC AGGCAATGCT chr5:96745742-96746242 - 30 1.92e-05 AGATCACCAG AGAAAAGTAAATAAAA GATCCTTTGA chr5:17305893-17306393 + 52 2.27e-05 GTTGCGTGTT AAACAAATAAATTAGA GATTCCTTTA chr6:138088212-138088712 + 64 2.47e-05 AACTATCTCT AAATACACACACGCAT GCTCACACAC chr10:23420943-23421443 + 59 2.68e-05 TAAGGTTACA AGAAAAATATACTCAG AGAACACTGC chr10:44752825-44753325 - 40 2.91e-05 GGCAGATTGT ATAAACAACTATTAAA ACCTCTCTCC chr12:27003698-27004198 + 44 2.91e-05 AAGGTGAAAT CAATACTGACAAAAAT GTCCAATGAG chr7:27165467-27165967 - 32 3.15e-05 GGCACGATCC CTTTACATAAAAACAT ATGGCTTTTG chr16:25049561-25050061 + 50 3.15e-05 agtgtaacac atacaattatgtacaa tacatgaaac chr3:17730355-17730855 + 85 3.15e-05 aatgagtcct acaaaaatcataaaat chr5:93677277-93677777 + 66 3.15e-05 CTAAGATCAA ATTACAAAATAATCAA GCTTTGTGGC chr20:50165935-50166435 - 83 3.97e-05 GC ACATAATCACAAAGAG CCAAGCACGC chr19:50896568-50897068 + 70 3.97e-05 CAATGTGGTC ACACCATGATACACAC AGCACATGAC chr5:16888589-16889089 + 74 4.62e-05 CATAGGGAAT AATTACATAATATAAA CAATAGGCCA chr14:96979584-96980084 - 12 5.75e-05 AATTAATTTT ACAACCAACTACTAAA TCAAAGTTCT chr3:182365135-182365635 - 22 7.11e-05 ACATTCACGC TGACACATCCACACAC TTCAGACAAA chr15:96053076-96053576 + 55 7.62e-05 TTAACCTTGT TTATACAAAATAACAC CAATATGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:54033423-54033923 7.9e-09 16_[+4]_68 chr1:183032411-183032911 1.1e-08 78_[-4]_6 chr17:8226713-8227213 1.9e-08 50_[+4]_34 chr10:112793338-11279383 4.5e-08 23_[-4]_61 chr17:59291713-59292213 7.7e-08 20_[-4]_64 chr7:116218169-116218669 2e-07 80_[-4]_4 chr3:190424480-190424980 2e-07 84_[+4] chr1:151494721-151495221 2.7e-07 48_[-4]_36 chr15:81888762-81889262 2.7e-07 34_[-4]_50 chr10:50463964-50464464 3.7e-07 18_[+4]_66 chr18:3409073-3409573 3.7e-07 1_[+4]_83 chr12:52903858-52904358 3.7e-07 80_[+4]_4 chr22:35364133-35364633 5e-07 [+4]_84 chr7:120806678-120807178 5.7e-07 29_[+4]_55 chr3:12629583-12630083 5.7e-07 [-4]_84 chr20:44728750-44729250 5.7e-07 18_[+4]_66 chr6:56529512-56530012 6.5e-07 79_[+4]_5 chr11:73376989-73377489 1.2e-06 82_[-4]_2 chr17:32015515-32016015 1.2e-06 4_[-4]_80 chr6:111568260-111568760 1.2e-06 [-4]_84 chr12:124518911-12451941 1.2e-06 [+4]_84 chr17:56592644-56593144 1.2e-06 81_[-4]_3 chr1:167658578-167659078 1.6e-06 27_[-4]_57 chr1:232678530-232679030 1.7e-06 13_[+4]_71 chr4:119730111-119730611 2.2e-06 35_[+4]_49 chr6:142885234-142885734 2.5e-06 47_[+4]_37 chr11:120346998-12034749 2.5e-06 9_[-4]_75 chr6:158040305-158040805 2.8e-06 24_[+4]_60 chr10:125633567-12563406 2.8e-06 27_[-4]_57 chr6:131816139-131816639 3.1e-06 38_[+4]_46 chr9:18976634-18977134 3.4e-06 83_[+4]_1 chr12:122368513-12236901 3.4e-06 53_[+4]_31 chr17:43368333-43368833 3.4e-06 28_[-4]_56 chr17:71438651-71439151 3.4e-06 23_[-4]_61 chr12:806357-806857 3.4e-06 44_[-4]_40 chr19:38543974-38544474 3.8e-06 83_[-4]_1 chr8:16825898-16826398 3.8e-06 2_[+4]_82 chr15:71747481-71747981 5.2e-06 25_[+4]_59 chr1:237166688-237167188 5.2e-06 61_[-4]_23 chr5:92552240-92552740 5.8e-06 35_[+4]_49 chr8:125430002-125430502 6.4e-06 58_[-4]_26 chr2:55843132-55843632 7.1e-06 27_[-4]_57 chr7:83267079-83267579 7.8e-06 83_[-4]_1 chr16:74577932-74578432 7.8e-06 40_[-4]_44 chr12:95073279-95073779 8.6e-06 46_[-4]_38 chr10:68153543-68154043 9.4e-06 49_[-4]_35 chr1:198763247-198763747 9.4e-06 62_[-4]_22 chr10:117148238-11714873 1e-05 30_[+4]_54 chr16:12120443-12120943 1.1e-05 21_[-4]_63 chr1:220527661-220528161 1.1e-05 64_[+4]_20 chr1:85297855-85298355 1.2e-05 78_[+4]_6 chr6:168024060-168024560 1.2e-05 [-4]_84 chr6:11270217-11270717 1.4e-05 64_[+4]_20 chr4:71111082-71111582 1.4e-05 79_[-4]_5 chr1:61091427-61091927 1.6e-05 9_[-4]_75 chr19:16279154-16279654 1.6e-05 13_[-4]_71 chr2:177038714-177039214 1.6e-05 57_[+4]_27 chr11:114159932-11416043 1.6e-05 14_[-4]_70 chr5:96745742-96746242 1.9e-05 29_[-4]_55 chr5:17305893-17306393 2.3e-05 51_[+4]_33 chr6:138088212-138088712 2.5e-05 63_[+4]_21 chr10:23420943-23421443 2.7e-05 58_[+4]_26 chr10:44752825-44753325 2.9e-05 39_[-4]_45 chr12:27003698-27004198 2.9e-05 43_[+4]_41 chr7:27165467-27165967 3.1e-05 31_[-4]_53 chr16:25049561-25050061 3.1e-05 49_[+4]_35 chr3:17730355-17730855 3.1e-05 84_[+4] chr5:93677277-93677777 3.1e-05 65_[+4]_19 chr20:50165935-50166435 4e-05 82_[-4]_2 chr19:50896568-50897068 4e-05 69_[+4]_15 chr5:16888589-16889089 4.6e-05 73_[+4]_11 chr14:96979584-96980084 5.7e-05 11_[-4]_73 chr3:182365135-182365635 7.1e-05 21_[-4]_63 chr15:96053076-96053576 7.6e-05 54_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AHAHAMANAHAMAMAA width=16 seqs=74 chr12:54033423-54033923 ( 17) AAATAAAGAAAAAAAA 1 chr1:183032411-183032911 ( 79) AAAAAAAGAAAAAAAA 1 chr17:8226713-8227213 ( 51) AAACACACACAAAAAA 1 chr10:112793338-11279383 ( 24) AGACAAACAAACAAAA 1 chr17:59291713-59292213 ( 21) AAACAAATAAACAAAC 1 chr7:116218169-116218669 ( 81) ATATAAAAACAAAAAT 1 chr3:190424480-190424980 ( 85) ATACCAAAAAAAAAAA 1 chr1:151494721-151495221 ( 49) AGAAAAAAAAAAAAAC 1 chr15:81888762-81889262 ( 35) AAACACAACAAAACAA 1 chr10:50463964-50464464 ( 19) CAATAAAAACAAACAA 1 chr18:3409073-3409573 ( 2) AAAACAAAACAAACAA 1 chr12:52903858-52904358 ( 81) AAAGAAAGAAAAAAAA 1 chr22:35364133-35364633 ( 1) AAAAAAAAAAAAAGAT 1 chr7:120806678-120807178 ( 30) TAACACATAAAAACAA 1 chr3:12629583-12630083 ( 1) AGAAAAATAAACAAAT 1 chr20:44728750-44729250 ( 19) ACATAATAAAACAAAA 1 chr6:56529512-56530012 ( 80) AAATAAAGAAGAAAAA 1 chr11:73376989-73377489 ( 83) ACACACACACACACAC 1 chr17:32015515-32016015 ( 5) ACACCCATAAACAAAA 1 chr6:111568260-111568760 ( 1) ACACACACACACACAC 1 chr12:124518911-12451941 ( 1) ACACACACACACACAC 1 chr17:56592644-56593144 ( 82) ACACACACACACACAC 1 chr1:167658578-167659078 ( 28) AGAGACAAAAAAAAAA 1 chr1:232678530-232679030 ( 14) ATAAAATTATACACAA 1 chr4:119730111-119730611 ( 36) AAGCAAACATAAACAA 1 chr6:142885234-142885734 ( 48) AGATAAAGCTAAACAA 1 chr11:120346998-12034749 ( 10) AAAGAAAGAAAAAGAA 1 chr6:158040305-158040805 ( 25) TATTAAAAAAAAAAAA 1 chr10:125633567-12563406 ( 28) AGACCAATAAATAAAA 1 chr6:131816139-131816639 ( 39) AAGAAAAAATAAACAA 1 chr9:18976634-18977134 ( 84) CCACAAACCAAAACAA 1 chr12:122368513-12236901 ( 54) CTAAAAATACAAAAAT 1 chr17:43368333-43368833 ( 29) CTAAAAATACAAAAAT 1 chr17:71438651-71439151 ( 24) TAACAATCACAAACAA 1 chr12:806357-806857 ( 45) ATATCAAAATAAACAT 1 chr19:38543974-38544474 ( 84) AGATAAAGAAGCAAAA 1 chr8:16825898-16826398 ( 3) ACACACACACATTAAA 1 chr15:71747481-71747981 ( 26) AAATAAATCAGCAAAA 1 chr1:237166688-237167188 ( 62) ATTCAAACCCAAACAA 1 chr5:92552240-92552740 ( 36) AAAAAAAGCCACTAAA 1 chr8:125430002-125430502 ( 59) ATACACACACACTCAC 1 chr2:55843132-55843632 ( 28) ACTTACAGATACACAA 1 chr7:83267079-83267579 ( 84) ATTAACAGAAAAAAAT 1 chr16:74577932-74578432 ( 41) ACATACTCATAATAAA 1 chr12:95073279-95073779 ( 47) ATACCCAAACACAGAA 1 chr10:68153543-68154043 ( 50) AAACAAACATATGCAA 1 chr1:198763247-198763747 ( 63) TGACAAACACACAGAA 1 chr10:117148238-11714873 ( 31) AGAAAAAGCTAATAAA 1 chr16:12120443-12120943 ( 22) ACATAAACACAGACAC 1 chr1:220527661-220528161 ( 65) AAACACGAATAAAAAT 1 chr1:85297855-85298355 ( 79) AAAAACACATACACGA 1 chr6:168024060-168024560 ( 1) AAACAAACATGATGAA 1 chr6:11270217-11270717 ( 65) AAATAAACAAGCAGAC 1 chr4:71111082-71111582 ( 80) AAATAAATAAATAGAG 1 chr1:61091427-61091927 ( 10) ACACCCACAAAGAAAA 1 chr19:16279154-16279654 ( 14) AATCACATCAAATCAA 1 chr2:177038714-177039214 ( 58) CCACAATAAAACACAT 1 chr11:114159932-11416043 ( 15) CTACAATAACAAACAC 1 chr5:96745742-96746242 ( 30) AGAAAAGTAAATAAAA 1 chr5:17305893-17306393 ( 52) AAACAAATAAATTAGA 1 chr6:138088212-138088712 ( 64) AAATACACACACGCAT 1 chr10:23420943-23421443 ( 59) AGAAAAATATACTCAG 1 chr10:44752825-44753325 ( 40) ATAAACAACTATTAAA 1 chr12:27003698-27004198 ( 44) CAATACTGACAAAAAT 1 chr7:27165467-27165967 ( 32) CTTTACATAAAAACAT 1 chr16:25049561-25050061 ( 50) ATACAATTATGTACAA 1 chr3:17730355-17730855 ( 85) ACAAAAATCATAAAAT 1 chr5:93677277-93677777 ( 66) ATTACAAAATAATCAA 1 chr20:50165935-50166435 ( 83) ACATAATCACAAAGAG 1 chr19:50896568-50897068 ( 70) ACACCATGATACACAC 1 chr5:16888589-16889089 ( 74) AATTACATAATATAAA 1 chr14:96979584-96980084 ( 12) ACAACCAACTACTAAA 1 chr3:182365135-182365635 ( 22) TGACACATCCACACAC 1 chr15:96053076-96053576 ( 55) TTATACAAAATAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.8508 E= 1.1e-033 179 -129 -1285 -153 74 -21 -71 -12 188 -1285 -329 -112 13 66 -271 27 188 -97 -1285 -1285 144 46 -1285 -1285 184 -1285 -329 -80 20 16 -59 13 184 -71 -1285 -1285 93 23 -1285 5 190 -1285 -171 -253 117 35 -329 -112 176 -1285 -329 -42 97 71 -129 -1285 205 -1285 -329 -1285 137 -59 -271 -42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 74 E= 1.1e-033 0.810811 0.108108 0.000000 0.081081 0.391892 0.229730 0.162162 0.216216 0.864865 0.000000 0.027027 0.108108 0.256757 0.418919 0.040541 0.283784 0.864865 0.135135 0.000000 0.000000 0.635135 0.364865 0.000000 0.000000 0.837838 0.000000 0.027027 0.135135 0.270270 0.297297 0.175676 0.256757 0.837838 0.162162 0.000000 0.000000 0.445946 0.310811 0.000000 0.243243 0.878378 0.000000 0.081081 0.040541 0.527027 0.337838 0.027027 0.108108 0.797297 0.000000 0.027027 0.175676 0.459459 0.432432 0.108108 0.000000 0.972973 0.000000 0.027027 0.000000 0.608108 0.175676 0.040541 0.175676 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AHAHAMANAHAMAMAA MEME-4 regular expression -------------------------------------------------------------------------------- A[ACT]A[CTA]A[AC]A[CAT]A[ACT]A[AC]A[AC]AA -------------------------------------------------------------------------------- Time 1491.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGSSGSGGSAGVGGGSGGGGG MEME-5 width = 22 sites = 120 llr = 1134 E-value = 4.3e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::22:11216:3112:23:21 pos.-specific C 22235233251:5132431221 probability G 68753756642a3875566658 matrix T ::1111:1::2::::11::2:: bits 2.1 1.9 * 1.7 * 1.5 * Relative 1.3 * * Entropy 1.0 * * * (13.6 bits) 0.8 * * * * 0.6 *** * * * ** * ** * 0.4 *** ********** ****** 0.2 ********************** 0.0 ---------------------- Multilevel GGGGCGGGGCAGCGGGGGGGGG consensus C CGCCCCGT A CCCCACC sequence A G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr15:40092240-40092740 - 44 2.47e-09 TGGAGATGCT GGGGAGGGAGAGCGGGCGGGCG CACAAGGGTG chr11:62771363-62771863 - 65 6.22e-08 AGCCCAGATC GGGGAGGGGGTGCGCGGGGGGA GGAGGTCAGG chr17:42676542-42677042 + 21 6.22e-08 CTCAGTGTCT GGGCCCCCGGAGGGGGGAGGGG GAAAAGCGTC chr17:50866476-50866976 + 72 8.84e-08 TTAGGCGGAG AGCGCCGGGCAGAGGGGGAGGG GGACGAA chr12:54359135-54359635 + 75 1.05e-07 GCCCGGGCGG GCGACTGGGGAGGGGGCGGGGG GAGC chr6:27472872-27473372 - 73 1.73e-07 CCGCCC GGCGCCGGCGTGCGGGGCGGGG CTCGCTCGTA chr6:159726847-159727347 - 56 1.73e-07 AGCTCAGTAA GGGAAGCGGCCGAGGGGAGGGG CGGGCCAGCG chr20:38033475-38033975 - 13 2.80e-07 CAAAGGGCAA GGGCCGGAGCAGAGGGGCACCG AGAGGCGTCG chr1:43389703-43390203 + 37 2.80e-07 CACCCTCACT GGCCCGGGCCGGCGCGGGAGGG CTGTGTGATG chr17:67993857-67994357 + 45 3.82e-07 GAGGCTGAGA CGGGAGGCCGAGAGGGGAAGGG AAGCCAGGAG chr12:54017272-54017772 + 38 4.45e-07 GGGAGAAGAG GGGGCTGGCGAGAGGGTGGGCG CGTAGTTAAT chr19:44844629-44845129 + 70 5.17e-07 ccacccagcc cggccgggccagcgcagcGCGG GGGCCGGTC chr19:40603512-40604012 - 4 5.17e-07 GCGGAGGGGA GGGAGGAGGCAGGCGGCCGGGG GAG chr22:38398518-38399018 - 17 5.17e-07 CTAAATCCTC CGGGCGGGGGTGGGGGTGCGGG ACGCTCCTTT chr19:44212467-44212967 + 18 6.94e-07 GGAgaggtcg cggccgcggcggaggccgagag gccgagggcg chr22:41446656-41447156 + 33 8.01e-07 CGCCCTGCAG GGGCGGGGCCAGGGCCCGGCCG GGACTACTTC chr14:75069208-75069708 - 16 1.06e-06 CCCTGCCCTT GGGGAGCCGGGGAGGGGCGGGA GAGGCTTTTC chr19:34134441-34134941 - 58 1.22e-06 CGCGCAGGAG GGTCCGGGGCAGGGGCCGGGAA GACTGGGCAG chr9:132581968-132582468 + 28 1.22e-06 CGGTGCTGAC GGGCCCCCGGAGCGGCGAGGGC GCGGAGAGAG chr5:173057131-173057631 + 25 1.40e-06 GACAGGGCAA AGGGCGAGGGAGCCGGGCCGGG GGTGTTTCGG chr7:73522253-73522753 + 69 1.61e-06 CAGAGTTAAA AGTGGGGGACAGCGGGGGATGG AGAGGACGAG chr12:121799839-12180033 + 41 2.10e-06 CCTCCCCCAG CGGCCCGGGCGGCCGGGGGTGG CTGAGTCAGA chr17:75904894-75905394 + 62 2.39e-06 TGGCCACCAG GGGGCGGCACAGACCGGGGTCG GCCGCCGGGG chr1:173868220-173868720 - 55 2.39e-06 CCCCAGGAGC GCGCTGCGGCGGAGGGCGGGCG AGGTGACCCC chr15:72230297-72230797 + 5 2.39e-06 GGCG AGGAAGGGGATGCGGGGGAGCG GACGTGACCA chr1:155017246-155017746 - 52 2.39e-06 GGGAGGAGAT GGGGAGGAGGAGAAGAGGGTAG GACGCCGCCC chr7:23470508-23471008 + 4 2.72e-06 GCG AGCGAGAGGAAGAGGGGGAGGG GAAACGAGAT chr22:49970633-49971133 - 35 2.72e-06 ACGTCATTTG GGGGCGGGGGAGGGGAGAACTG CTAGTCTTGG chr13:112689540-11269004 - 35 2.72e-06 GCCTCCCGGG GCGCAGGCGCTGGGCGCGGCGG GGAAGGGACT chr12:1661882-1662382 - 6 2.72e-06 AAAACAGGAG AGGGCTGGACAGCGGGCGGTGC AGCGG chr20:48921351-48921851 - 44 3.09e-06 GAGTCAGGTG GGCGAGAGACAGAAGGCGAGGG TGGAGGGTGG chr7:4641734-4642234 + 8 3.09e-06 TAAACAC ACGGCGCGGCTGCCGGCGAGGG GTAACCCTAA chr17:27353541-27354041 - 36 3.09e-06 ATCACTCCCT GGGACCGTGGGGCGGCCGGGAG CGAGTGTGGA chr20:3173057-3173557 - 49 3.09e-06 AGGGTCCCAA GGGGGAGGGGAGCGGAGAGGAG GCGGATGATG chr19:39031583-39032083 - 7 3.09e-06 GGGAGCGGTA GCGGGGCCGGAGGGGCGGGGCC GCACTG chr5:179818819-179819319 + 37 3.50e-06 TCACTGAGAT GGGTGGCAGCAGGGGCCGGGGA TCCCCCTATT chr19:35269677-35270177 - 70 3.97e-06 GGGGCACAG AGGCAGCGGCGGGGCCCGGGCG CTGGGCTGCC chr12:51025987-51026487 - 58 3.97e-06 TCCGCTCGCT GGCAGGGAGGGGCGCGGGGCGG CTCGAGGGCC chr19:8240277-8240777 + 66 3.97e-06 CCCCAGGCAG CGGGCCAGGCTGCAGGGGCGGG TGAGTGAGTC chr19:39430808-39431308 + 56 3.97e-06 GTGACTCCTT GGGAGGGGGAAGAGGGCTGTGG TCACTCAGTG chr1:15524482-15524982 - 13 3.97e-06 AATTGACCCT GGGGACAGGGCGAGGCGCGGAG GCGTCCTGAA chr1:234723899-234724399 + 35 4.48e-06 agagaaatgg agggagagggagggaggaaggg aggagggagg chr1:31938370-31938870 - 64 4.48e-06 GGTGCGGATG GGCGGGGCGCAGCGTGGGCGAG CGACTCCCCA chr21:39313560-39314060 + 62 4.48e-06 AAAGACCTGG GCGCCGCAGCAGCGAGTGGGGG AGGGGAGGGC chr17:17913910-17914410 + 35 4.48e-06 CATTCCCTCT GGGCGTGGACAGAGGAGGGGTG TTCAGAGACA chr1:155000886-155001386 + 29 5.06e-06 GCTGAGTCAC GGCCCGGCGCGGAgagggagag agggagaaag chr6:37819284-37819784 + 56 5.06e-06 AGCGGCCGCT GCGACTCCGGAGCCGGCGGGGG GCTCCGGTCC chr17:48626415-48626915 - 44 5.71e-06 GCAGCGGGAG GGGGGGACCGGGCGGCCGGTAG CTGGGGCTGA chr17:47649655-47650155 - 60 5.71e-06 GTGAGTGAGA GGCGGCGCGCAGGGAGGGAGCG AGGGAGGGAG chr8:144103761-144104261 + 34 5.71e-06 GGCGTGTACG AGGCTGGGGCAGGGCGGCCGAG GCGCTCACGT chr12:26832884-26833384 - 32 6.43e-06 GGAGTGGACA CGGAGTGGGGAGCGGAGAGGGA AGGAGGAGGA chr3:194134809-194135309 - 72 7.23e-06 TTTATTG CCGCCGCGGCTGCGGCCGGGCC GGGAGGATGT chr6:34248536-34249036 + 67 7.23e-06 CTAGGATGCG GGCCAGCAACAGCGGACAGGAG GTGGTTCCCA chr12:51172719-51173219 - 66 8.12e-06 TCCAGGCCGT GGGGGGCTACAGAGGGCGAGAA GTCGGCTCAG chr17:7844450-7844950 - 14 8.12e-06 GTCGCATGCT CCGGCCGGCGTGGGGGCCGGCG CTACCCGCAA chr15:71115101-71115601 + 68 9.10e-06 CCCTTCCCGC GGTCGCCGCCAGGGGGCGGCAG GAGCGGCTCC chr1:154974031-154974531 - 33 9.10e-06 GGCACCAAAT CGGCCCGCGGTGCGGTGCGGAG ACTCCATGAG chr17:82037293-82037793 - 1 9.10e-06 GGCGCTGCAC GCGACGGGCGCGCGGGTGGTGG chr16:88264898-88265398 - 62 9.10e-06 CGAGACAGTG GGCGGCGGCCAGGGCAGAGCGG GACTCCCCAT chr16:10743740-10744240 + 28 1.02e-05 CAGACTGTCC AGGGGCCGACAGCGCCCAGGCG GGCAGAGGGG chr19:35889351-35889851 + 18 1.14e-05 CAGGACCCAA GGTTAGGGGCAGGGGGTAGGAG GTCACACTTG chr9:129642022-129642522 + 71 1.14e-05 GATGTCCAGT GGGCGGCCCCAGCGGAGTGGGA GAGTGGAG chr9:136546131-136546631 + 75 1.14e-05 CGGAATGGGG AGGGCGAGGCCGCGGACAGCCG TGTG chr7:73308582-73309082 - 43 1.27e-05 CCGGAAGTCC GGGCGGGCGCCGAGCCGGGTGC GTTTTGCCAC chr10:110918585-11091908 - 14 1.27e-05 CCCAACCAGT GGGCCGGACCCGGGCCGGACGG TCCCTGTGGG chr22:46762640-46763140 + 76 1.76e-05 TTGGCCTCCT GGGCTGCGGGTGGAGTCGGGGG TCT chr4:77075905-77076405 - 6 1.76e-05 TACTTTCGTT GGACCGGGAAGGCGGCGGGGAG GAACA chr5:10601252-10601752 - 58 1.76e-05 GAGAATGCCA GGCTCGGCCCAGAGGATGGTGG GAGCACAGAT chr7:100450358-100450858 - 45 1.76e-05 ACCTCCAGGT GGCGCCGCGGTGCGCGGACCGG CGTTAAGGTC chr17:81869321-81869821 + 47 1.76e-05 CAGGGGGCCC GGGGCCGAGCTGCACACCAGGG TCAGGCCAGT chr12:54052005-54052505 - 8 1.96e-05 CTTTGTGTCG GCGGCGGCGCAGGGCTGGCGGC CGCTGGC chr1:20507791-20508291 - 16 1.96e-05 GGCTCGCCGC CGTCATGGAGAGCGGAGGGCGG CCCTCGCTGT chr19:36139805-36140305 + 9 2.17e-05 TAGGACCG CGCGGGCGACAGCAGGGCCGCG GTGCAGTGTC chr19:36572937-36573437 - 5 2.17e-05 AGGCCTCTGT ACGCGGGAGCTGCGGACGATGG TGGT chr5:58460508-58461008 - 72 2.17e-05 GGGCATG GGCGGGGGCCAGACGGGCCTCG AGTGGGATCC chr2:73233401-73233901 - 52 2.17e-05 CTTCCCGTGA AGGCGTGGGGAGGAGGGAAGCG CAGCTGGGAG chr19:35716904-35717404 - 46 2.17e-05 CTGCCTCCTG GGGAGGACGGGGCGCCTCGGGG GTGGAAGAAG chr5:96935152-96935652 - 10 2.41e-05 AGAGTGCCTC AGGAGGGCGGTGAGGAGGAGAC GGAAGAGAG chr19:37655854-37656354 - 45 2.41e-05 ACTCGGTCCA GGTACGCGGGGGCGCGGCGGCC GTCACTCAGC chr11:76208714-76209214 + 63 2.41e-05 CGCTAAGCCG GGGCTCGAGGAGGGGGGAATCG CGGCTGCCTC chr4:13640100-13640600 + 18 2.41e-05 agagttttat ggggcgatggagggggagagag tgcgtcatct chr8:23246429-23246929 + 5 2.67e-05 GGAA CGAGGGCGGAAGCGGACCAGGG CCAGGCTTGT chr19:18223988-18224488 + 24 2.95e-05 GGCAAGAACT GGGGCGCTAGAGAAGGCGGTGA CCTGGGGGTG chr16:30065243-30065743 + 42 2.95e-05 GCTGAGTCAC GGCGCCCCAGAGCGCGCCAGGC TGGGGGAAAG chr4:139555153-139555653 + 8 2.95e-05 CGGACTC GCGGCGCGCCTGCACAGCGTGG CGGCTGCATC chr11:114400471-11440097 + 8 3.26e-05 ATGGGGG CGGCGGCGGCGGAAGCGGATCG CACTCTCTTT chr9:137046483-137046983 + 38 3.26e-05 CAAGAGTGAT CCGGAGCCACTGAGGACCGGAG CTGGGAGCTG chr7:155205343-155205843 + 50 3.59e-05 tggagacact ggctggaggccgcgcagcaggg aagtggcagt chr1:46132414-46132914 - 67 3.59e-05 TGGCGCCTCA GCGGGTGGGCAGCATGGGGCGG GGAGGGTGTC chr1:1000571-1001071 + 50 3.96e-05 gtgatggcgc gggccgggccggaccACGAGGA GCAGAACGTG chr19:8389695-8390195 + 48 4.36e-05 TATGGGCTTG GGGGGCGACCAGGGCAGCGCGC GCTGACCTAT chr16:30526806-30527306 - 26 4.36e-05 GCCACACGCA CCGACGACGCGGGGCCCGGGAG ATGGACAGAC chr15:66701042-66701542 + 11 4.36e-05 TTGCCACCCT CGGACTAGCGAGCGCGCCCGAG GAGGTACCCC chr3:17742323-17742823 + 48 4.36e-05 GTCTGCAGGG CGCTCGCGGAAGCGGCCGGGCC CGGCCCGACC chr5:1801205-1801705 + 50 5.27e-05 CTGCTGAACC GGTGTGGCGAGGCGGCGCGGAG CCTGCCCCTG chr19:1383494-1383994 - 1 5.27e-05 GCACGTGGGG GCCGCGGGTCTGCGGCGGACCG chr22:29388135-29388635 - 70 5.78e-05 TGGGACCTG CGGGTGAGGAAGCGGGGACCCG GGCGAGCCAG chr10:93702411-93702911 + 72 5.78e-05 CGGGAAACAA GGGCAGCGGGAGAAACGGCCCG GAAAGGG chr19:10252197-10252697 + 16 6.34e-05 AGTTCCCTGG CGGAAGAGGCAGCGCGTGCGAC CGAGAACCCG chr1:93078943-93079443 - 48 6.34e-05 CGGGGGGGCA GGGACTGCGCGGCGAGCGCGGA GGAACACCGC chr1:228377889-228378389 - 32 6.34e-05 AGGTCATCCT CGGGTGGACGAGGGTGCAGGGG CCGTGAGGTC chr12:10211934-10212434 - 59 6.94e-05 CGCCTGTAAT CCCAGGAGGCCGAGGCGGGCGG ATCACCTGAG chr1:155001608-155002108 + 43 6.94e-05 CGGCTCCCTC CGAGAGGGGGTGGGGCGTAGGG GCCGGAGCCG chr8:123156773-123157273 + 30 7.59e-05 gcaagggcga gggcaGGTCGAGCAGTCGGGGA CTGCTCCAGG chr19:36604677-36605177 - 20 7.59e-05 CGCCTGTGAT GGTCCCGGGGGGGCGGGGGGTG TGCACAGCAG chr7:98252141-98252641 + 66 8.30e-05 GTTCTCTCTG GCGGCGCGACACCGGCCCGTGG ACCGCCCGGC chr8:37479285-37479785 + 46 9.06e-05 AGAAGACTGG GGGTAGCAACAGCCCGGCGCAG GCAGCTCTAA chr17:45131851-45132351 - 1 9.06e-05 GTCATCCGAG GGTCCCGGGGCGAGCCGGGCGC chr15:75625395-75625895 + 31 9.88e-05 AGAGGCAACT CGGCAGCTGGCGGGGCCCGGGC TCGAACCCAG chr11:63974466-63974966 - 63 9.88e-05 TGGATCTTGG CGCGCGGCACTGGGAGCCGCCG GGCCGAGCCT chr16:23557261-23557761 - 10 1.08e-04 GAGTGCGGCC GCAGCCGTCCAGGGGGGCGTGG GATTTCGCG chr19:55653485-55653985 + 41 1.08e-04 AGACCGGAGC GCGGCGCGAGAGGCGTGAGTCG ATGACCTCTA chr10:17228361-17228861 - 20 1.38e-04 TTCGGACGGC GGGAGTTGCGAGACGGCGGTGG CAGAGGAAAG chr3:48663582-48664082 - 65 1.38e-04 CCCATGCGAT GAGTCCGCCGTGAGGGGCGGGG CCTCCCATTG chr19:39125802-39126302 + 33 1.50e-04 GTGGAGGGAA GGGTCGCGTCCGAGGGGTCGGG GGTTAACGCA chr17:56592644-56593144 - 33 1.76e-04 CCTTTGCACC AGGGAGTCCGAGAGCCGCAGCG TTGCGCAGCG chr7:2242008-2242508 + 47 1.76e-04 GCGGCGGTGC AGGTACGAAAAGCGCGCGCGGG GATTCCAGGA chr19:18193240-18193740 + 20 2.60e-04 TTCGACCCAC GGCGCTCCGGTGAGGACGCCAC GCTGCTTAGT chr19:35995014-35995514 - 14 3.49e-04 GAGACGCTCA GCGAACGACCTGCGAACCGCGG AGCCGCCACA chr3:31532033-31532533 - 65 6.03e-04 GACGCGGTTT CGCGCGCCTGTGCGGTCGGCGA GAAAGGGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:40092240-40092740 2.5e-09 43_[-5]_35 chr11:62771363-62771863 6.2e-08 64_[-5]_14 chr17:42676542-42677042 6.2e-08 20_[+5]_58 chr17:50866476-50866976 8.8e-08 71_[+5]_7 chr12:54359135-54359635 1e-07 74_[+5]_4 chr6:27472872-27473372 1.7e-07 72_[-5]_6 chr6:159726847-159727347 1.7e-07 55_[-5]_23 chr20:38033475-38033975 2.8e-07 12_[-5]_66 chr1:43389703-43390203 2.8e-07 36_[+5]_42 chr17:67993857-67994357 3.8e-07 44_[+5]_34 chr12:54017272-54017772 4.4e-07 37_[+5]_41 chr19:44844629-44845129 5.2e-07 69_[+5]_9 chr19:40603512-40604012 5.2e-07 3_[-5]_75 chr22:38398518-38399018 5.2e-07 16_[-5]_62 chr19:44212467-44212967 6.9e-07 17_[+5]_61 chr22:41446656-41447156 8e-07 32_[+5]_46 chr14:75069208-75069708 1.1e-06 15_[-5]_63 chr19:34134441-34134941 1.2e-06 57_[-5]_21 chr9:132581968-132582468 1.2e-06 27_[+5]_51 chr5:173057131-173057631 1.4e-06 24_[+5]_54 chr7:73522253-73522753 1.6e-06 68_[+5]_10 chr12:121799839-12180033 2.1e-06 40_[+5]_38 chr17:75904894-75905394 2.4e-06 61_[+5]_17 chr1:173868220-173868720 2.4e-06 54_[-5]_24 chr15:72230297-72230797 2.4e-06 4_[+5]_74 chr1:155017246-155017746 2.4e-06 51_[-5]_27 chr7:23470508-23471008 2.7e-06 3_[+5]_75 chr22:49970633-49971133 2.7e-06 34_[-5]_44 chr13:112689540-11269004 2.7e-06 34_[-5]_44 chr12:1661882-1662382 2.7e-06 5_[-5]_73 chr20:48921351-48921851 3.1e-06 43_[-5]_35 chr7:4641734-4642234 3.1e-06 7_[+5]_71 chr17:27353541-27354041 3.1e-06 35_[-5]_43 chr20:3173057-3173557 3.1e-06 48_[-5]_30 chr19:39031583-39032083 3.1e-06 6_[-5]_72 chr5:179818819-179819319 3.5e-06 36_[+5]_42 chr19:35269677-35270177 4e-06 69_[-5]_9 chr12:51025987-51026487 4e-06 57_[-5]_21 chr19:8240277-8240777 4e-06 65_[+5]_13 chr19:39430808-39431308 4e-06 55_[+5]_23 chr1:15524482-15524982 4e-06 12_[-5]_66 chr1:234723899-234724399 4.5e-06 34_[+5]_44 chr1:31938370-31938870 4.5e-06 63_[-5]_15 chr21:39313560-39314060 4.5e-06 61_[+5]_17 chr17:17913910-17914410 4.5e-06 34_[+5]_44 chr1:155000886-155001386 5.1e-06 28_[+5]_50 chr6:37819284-37819784 5.1e-06 55_[+5]_23 chr17:48626415-48626915 5.7e-06 43_[-5]_35 chr17:47649655-47650155 5.7e-06 59_[-5]_19 chr8:144103761-144104261 5.7e-06 33_[+5]_45 chr12:26832884-26833384 6.4e-06 31_[-5]_47 chr3:194134809-194135309 7.2e-06 71_[-5]_7 chr6:34248536-34249036 7.2e-06 66_[+5]_12 chr12:51172719-51173219 8.1e-06 65_[-5]_13 chr17:7844450-7844950 8.1e-06 13_[-5]_65 chr15:71115101-71115601 9.1e-06 67_[+5]_11 chr1:154974031-154974531 9.1e-06 32_[-5]_46 chr17:82037293-82037793 9.1e-06 [-5]_78 chr16:88264898-88265398 9.1e-06 61_[-5]_17 chr16:10743740-10744240 1e-05 27_[+5]_51 chr19:35889351-35889851 1.1e-05 17_[+5]_61 chr9:129642022-129642522 1.1e-05 70_[+5]_8 chr9:136546131-136546631 1.1e-05 74_[+5]_4 chr7:73308582-73309082 1.3e-05 42_[-5]_36 chr10:110918585-11091908 1.3e-05 13_[-5]_65 chr22:46762640-46763140 1.8e-05 75_[+5]_3 chr4:77075905-77076405 1.8e-05 5_[-5]_73 chr5:10601252-10601752 1.8e-05 57_[-5]_21 chr7:100450358-100450858 1.8e-05 44_[-5]_34 chr17:81869321-81869821 1.8e-05 46_[+5]_32 chr12:54052005-54052505 2e-05 7_[-5]_71 chr1:20507791-20508291 2e-05 15_[-5]_63 chr19:36139805-36140305 2.2e-05 8_[+5]_70 chr19:36572937-36573437 2.2e-05 4_[-5]_74 chr5:58460508-58461008 2.2e-05 71_[-5]_7 chr2:73233401-73233901 2.2e-05 51_[-5]_27 chr19:35716904-35717404 2.2e-05 45_[-5]_33 chr5:96935152-96935652 2.4e-05 9_[-5]_69 chr19:37655854-37656354 2.4e-05 44_[-5]_34 chr11:76208714-76209214 2.4e-05 62_[+5]_16 chr4:13640100-13640600 2.4e-05 17_[+5]_61 chr8:23246429-23246929 2.7e-05 4_[+5]_74 chr19:18223988-18224488 2.9e-05 23_[+5]_55 chr16:30065243-30065743 2.9e-05 41_[+5]_37 chr4:139555153-139555653 2.9e-05 7_[+5]_71 chr11:114400471-11440097 3.3e-05 7_[+5]_71 chr9:137046483-137046983 3.3e-05 37_[+5]_41 chr7:155205343-155205843 3.6e-05 49_[+5]_29 chr1:46132414-46132914 3.6e-05 66_[-5]_12 chr1:1000571-1001071 4e-05 49_[+5]_29 chr19:8389695-8390195 4.4e-05 47_[+5]_31 chr16:30526806-30527306 4.4e-05 25_[-5]_53 chr15:66701042-66701542 4.4e-05 10_[+5]_68 chr3:17742323-17742823 4.4e-05 47_[+5]_31 chr5:1801205-1801705 5.3e-05 49_[+5]_29 chr19:1383494-1383994 5.3e-05 [-5]_78 chr22:29388135-29388635 5.8e-05 69_[-5]_9 chr10:93702411-93702911 5.8e-05 71_[+5]_7 chr19:10252197-10252697 6.3e-05 15_[+5]_63 chr1:93078943-93079443 6.3e-05 47_[-5]_31 chr1:228377889-228378389 6.3e-05 31_[-5]_47 chr12:10211934-10212434 6.9e-05 58_[-5]_20 chr1:155001608-155002108 6.9e-05 42_[+5]_36 chr8:123156773-123157273 7.6e-05 29_[+5]_49 chr19:36604677-36605177 7.6e-05 19_[-5]_59 chr7:98252141-98252641 8.3e-05 65_[+5]_13 chr8:37479285-37479785 9.1e-05 45_[+5]_33 chr17:45131851-45132351 9.1e-05 [-5]_78 chr15:75625395-75625895 9.9e-05 30_[+5]_48 chr11:63974466-63974966 9.9e-05 62_[-5]_16 chr16:23557261-23557761 0.00011 9_[-5]_69 chr19:55653485-55653985 0.00011 40_[+5]_38 chr10:17228361-17228861 0.00014 19_[-5]_59 chr3:48663582-48664082 0.00014 64_[-5]_14 chr19:39125802-39126302 0.00015 32_[+5]_46 chr17:56592644-56593144 0.00018 32_[-5]_46 chr7:2242008-2242508 0.00018 46_[+5]_32 chr19:18193240-18193740 0.00026 19_[+5]_59 chr19:35995014-35995514 0.00035 13_[-5]_65 chr3:31532033-31532533 0.0006 64_[-5]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSSGSGGSAGVGGGSGGGGG width=22 seqs=120 chr15:40092240-40092740 ( 44) GGGGAGGGAGAGCGGGCGGGCG 1 chr11:62771363-62771863 ( 65) GGGGAGGGGGTGCGCGGGGGGA 1 chr17:42676542-42677042 ( 21) GGGCCCCCGGAGGGGGGAGGGG 1 chr17:50866476-50866976 ( 72) AGCGCCGGGCAGAGGGGGAGGG 1 chr12:54359135-54359635 ( 75) GCGACTGGGGAGGGGGCGGGGG 1 chr6:27472872-27473372 ( 73) GGCGCCGGCGTGCGGGGCGGGG 1 chr6:159726847-159727347 ( 56) GGGAAGCGGCCGAGGGGAGGGG 1 chr20:38033475-38033975 ( 13) GGGCCGGAGCAGAGGGGCACCG 1 chr1:43389703-43390203 ( 37) GGCCCGGGCCGGCGCGGGAGGG 1 chr17:67993857-67994357 ( 45) CGGGAGGCCGAGAGGGGAAGGG 1 chr12:54017272-54017772 ( 38) GGGGCTGGCGAGAGGGTGGGCG 1 chr19:44844629-44845129 ( 70) CGGCCGGGCCAGCGCAGCGCGG 1 chr19:40603512-40604012 ( 4) GGGAGGAGGCAGGCGGCCGGGG 1 chr22:38398518-38399018 ( 17) CGGGCGGGGGTGGGGGTGCGGG 1 chr19:44212467-44212967 ( 18) CGGCCGCGGCGGAGGCCGAGAG 1 chr22:41446656-41447156 ( 33) GGGCGGGGCCAGGGCCCGGCCG 1 chr14:75069208-75069708 ( 16) GGGGAGCCGGGGAGGGGCGGGA 1 chr19:34134441-34134941 ( 58) GGTCCGGGGCAGGGGCCGGGAA 1 chr9:132581968-132582468 ( 28) GGGCCCCCGGAGCGGCGAGGGC 1 chr5:173057131-173057631 ( 25) AGGGCGAGGGAGCCGGGCCGGG 1 chr7:73522253-73522753 ( 69) AGTGGGGGACAGCGGGGGATGG 1 chr12:121799839-12180033 ( 41) CGGCCCGGGCGGCCGGGGGTGG 1 chr17:75904894-75905394 ( 62) GGGGCGGCACAGACCGGGGTCG 1 chr1:173868220-173868720 ( 55) GCGCTGCGGCGGAGGGCGGGCG 1 chr15:72230297-72230797 ( 5) AGGAAGGGGATGCGGGGGAGCG 1 chr1:155017246-155017746 ( 52) GGGGAGGAGGAGAAGAGGGTAG 1 chr7:23470508-23471008 ( 4) AGCGAGAGGAAGAGGGGGAGGG 1 chr22:49970633-49971133 ( 35) GGGGCGGGGGAGGGGAGAACTG 1 chr13:112689540-11269004 ( 35) GCGCAGGCGCTGGGCGCGGCGG 1 chr12:1661882-1662382 ( 6) AGGGCTGGACAGCGGGCGGTGC 1 chr20:48921351-48921851 ( 44) GGCGAGAGACAGAAGGCGAGGG 1 chr7:4641734-4642234 ( 8) ACGGCGCGGCTGCCGGCGAGGG 1 chr17:27353541-27354041 ( 36) GGGACCGTGGGGCGGCCGGGAG 1 chr20:3173057-3173557 ( 49) GGGGGAGGGGAGCGGAGAGGAG 1 chr19:39031583-39032083 ( 7) GCGGGGCCGGAGGGGCGGGGCC 1 chr5:179818819-179819319 ( 37) GGGTGGCAGCAGGGGCCGGGGA 1 chr19:35269677-35270177 ( 70) AGGCAGCGGCGGGGCCCGGGCG 1 chr12:51025987-51026487 ( 58) GGCAGGGAGGGGCGCGGGGCGG 1 chr19:8240277-8240777 ( 66) CGGGCCAGGCTGCAGGGGCGGG 1 chr19:39430808-39431308 ( 56) GGGAGGGGGAAGAGGGCTGTGG 1 chr1:15524482-15524982 ( 13) GGGGACAGGGCGAGGCGCGGAG 1 chr1:234723899-234724399 ( 35) AGGGAGAGGGAGGGAGGAAGGG 1 chr1:31938370-31938870 ( 64) GGCGGGGCGCAGCGTGGGCGAG 1 chr21:39313560-39314060 ( 62) GCGCCGCAGCAGCGAGTGGGGG 1 chr17:17913910-17914410 ( 35) GGGCGTGGACAGAGGAGGGGTG 1 chr1:155000886-155001386 ( 29) GGCCCGGCGCGGAGAGGGAGAG 1 chr6:37819284-37819784 ( 56) GCGACTCCGGAGCCGGCGGGGG 1 chr17:48626415-48626915 ( 44) GGGGGGACCGGGCGGCCGGTAG 1 chr17:47649655-47650155 ( 60) GGCGGCGCGCAGGGAGGGAGCG 1 chr8:144103761-144104261 ( 34) AGGCTGGGGCAGGGCGGCCGAG 1 chr12:26832884-26833384 ( 32) CGGAGTGGGGAGCGGAGAGGGA 1 chr3:194134809-194135309 ( 72) CCGCCGCGGCTGCGGCCGGGCC 1 chr6:34248536-34249036 ( 67) GGCCAGCAACAGCGGACAGGAG 1 chr12:51172719-51173219 ( 66) GGGGGGCTACAGAGGGCGAGAA 1 chr17:7844450-7844950 ( 14) CCGGCCGGCGTGGGGGCCGGCG 1 chr15:71115101-71115601 ( 68) GGTCGCCGCCAGGGGGCGGCAG 1 chr1:154974031-154974531 ( 33) CGGCCCGCGGTGCGGTGCGGAG 1 chr17:82037293-82037793 ( 1) GCGACGGGCGCGCGGGTGGTGG 1 chr16:88264898-88265398 ( 62) GGCGGCGGCCAGGGCAGAGCGG 1 chr16:10743740-10744240 ( 28) AGGGGCCGACAGCGCCCAGGCG 1 chr19:35889351-35889851 ( 18) GGTTAGGGGCAGGGGGTAGGAG 1 chr9:129642022-129642522 ( 71) GGGCGGCCCCAGCGGAGTGGGA 1 chr9:136546131-136546631 ( 75) AGGGCGAGGCCGCGGACAGCCG 1 chr7:73308582-73309082 ( 43) GGGCGGGCGCCGAGCCGGGTGC 1 chr10:110918585-11091908 ( 14) GGGCCGGACCCGGGCCGGACGG 1 chr22:46762640-46763140 ( 76) GGGCTGCGGGTGGAGTCGGGGG 1 chr4:77075905-77076405 ( 6) GGACCGGGAAGGCGGCGGGGAG 1 chr5:10601252-10601752 ( 58) GGCTCGGCCCAGAGGATGGTGG 1 chr7:100450358-100450858 ( 45) GGCGCCGCGGTGCGCGGACCGG 1 chr17:81869321-81869821 ( 47) GGGGCCGAGCTGCACACCAGGG 1 chr12:54052005-54052505 ( 8) GCGGCGGCGCAGGGCTGGCGGC 1 chr1:20507791-20508291 ( 16) CGTCATGGAGAGCGGAGGGCGG 1 chr19:36139805-36140305 ( 9) CGCGGGCGACAGCAGGGCCGCG 1 chr19:36572937-36573437 ( 5) ACGCGGGAGCTGCGGACGATGG 1 chr5:58460508-58461008 ( 72) GGCGGGGGCCAGACGGGCCTCG 1 chr2:73233401-73233901 ( 52) AGGCGTGGGGAGGAGGGAAGCG 1 chr19:35716904-35717404 ( 46) GGGAGGACGGGGCGCCTCGGGG 1 chr5:96935152-96935652 ( 10) AGGAGGGCGGTGAGGAGGAGAC 1 chr19:37655854-37656354 ( 45) GGTACGCGGGGGCGCGGCGGCC 1 chr11:76208714-76209214 ( 63) GGGCTCGAGGAGGGGGGAATCG 1 chr4:13640100-13640600 ( 18) GGGGCGATGGAGGGGGAGAGAG 1 chr8:23246429-23246929 ( 5) CGAGGGCGGAAGCGGACCAGGG 1 chr19:18223988-18224488 ( 24) GGGGCGCTAGAGAAGGCGGTGA 1 chr16:30065243-30065743 ( 42) GGCGCCCCAGAGCGCGCCAGGC 1 chr4:139555153-139555653 ( 8) GCGGCGCGCCTGCACAGCGTGG 1 chr11:114400471-11440097 ( 8) CGGCGGCGGCGGAAGCGGATCG 1 chr9:137046483-137046983 ( 38) CCGGAGCCACTGAGGACCGGAG 1 chr7:155205343-155205843 ( 50) GGCTGGAGGCCGCGCAGCAGGG 1 chr1:46132414-46132914 ( 67) GCGGGTGGGCAGCATGGGGCGG 1 chr1:1000571-1001071 ( 50) GGGCCGGGCCGGACCACGAGGA 1 chr19:8389695-8390195 ( 48) GGGGGCGACCAGGGCAGCGCGC 1 chr16:30526806-30527306 ( 26) CCGACGACGCGGGGCCCGGGAG 1 chr15:66701042-66701542 ( 11) CGGACTAGCGAGCGCGCCCGAG 1 chr3:17742323-17742823 ( 48) CGCTCGCGGAAGCGGCCGGGCC 1 chr5:1801205-1801705 ( 50) GGTGTGGCGAGGCGGCGCGGAG 1 chr19:1383494-1383994 ( 1) GCCGCGGGTCTGCGGCGGACCG 1 chr22:29388135-29388635 ( 70) CGGGTGAGGAAGCGGGGACCCG 1 chr10:93702411-93702911 ( 72) GGGCAGCGGGAGAAACGGCCCG 1 chr19:10252197-10252697 ( 16) CGGAAGAGGCAGCGCGTGCGAC 1 chr1:93078943-93079443 ( 48) GGGACTGCGCGGCGAGCGCGGA 1 chr1:228377889-228378389 ( 32) CGGGTGGACGAGGGTGCAGGGG 1 chr12:10211934-10212434 ( 59) CCCAGGAGGCCGAGGCGGGCGG 1 chr1:155001608-155002108 ( 43) CGAGAGGGGGTGGGGCGTAGGG 1 chr8:123156773-123157273 ( 30) GGGCAGGTCGAGCAGTCGGGGA 1 chr19:36604677-36605177 ( 20) GGTCCCGGGGGGGCGGGGGGTG 1 chr7:98252141-98252641 ( 66) GCGGCGCGACACCGGCCCGTGG 1 chr8:37479285-37479785 ( 46) GGGTAGCAACAGCCCGGCGCAG 1 chr17:45131851-45132351 ( 1) GGTCCCGGGGCGAGCCGGGCGC 1 chr15:75625395-75625895 ( 31) CGGCAGCTGGCGGGGCCCGGGC 1 chr11:63974466-63974966 ( 63) CGCGCGGCACTGGGAGCCGCCG 1 chr16:23557261-23557761 ( 10) GCAGCCGTCCAGGGGGGCGTGG 1 chr19:55653485-55653985 ( 41) GCGGCGCGAGAGGCGTGAGTCG 1 chr10:17228361-17228861 ( 20) GGGAGTTGCGAGACGGCGGTGG 1 chr3:48663582-48664082 ( 65) GAGTCCGCCGTGAGGGGCGGGG 1 chr19:39125802-39126302 ( 33) GGGTCGCGTCCGAGGGGTCGGG 1 chr17:56592644-56593144 ( 33) AGGGAGTCCGAGAGCCGCAGCG 1 chr7:2242008-2242508 ( 47) AGGTACGAAAAGCGCGCGCGGG 1 chr19:18193240-18193740 ( 20) GGCGCTCCGGTGAGGACGCCAC 1 chr19:35995014-35995514 ( 14) GCGAACGACCTGCGAACCGCGG 1 chr3:31532033-31532533 ( 65) CGCGCGCCTGTGCGGTCGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.29765 E= 4.3e-031 -73 -29 127 -1355 -481 -53 161 -1355 -282 -47 140 -165 -49 18 79 -165 -12 79 1 -201 -481 -35 135 -112 -73 18 103 -381 -91 -9 110 -201 -49 -29 116 -323 -165 94 65 -1355 123 -153 -74 -23 -1355 -499 190 -1355 23 76 5 -1355 -112 -141 158 -1355 -182 -9 131 -323 -29 -18 99 -223 -481 53 103 -182 -57 -4 105 -282 9 -90 120 -1355 -1355 -41 126 -49 -17 -24 103 -323 -123 -109 155 -1355 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 120 E= 4.3e-031 0.141667 0.216667 0.641667 0.000000 0.008333 0.183333 0.808333 0.000000 0.033333 0.191667 0.700000 0.075000 0.166667 0.300000 0.458333 0.075000 0.216667 0.458333 0.266667 0.058333 0.008333 0.208333 0.675000 0.108333 0.141667 0.300000 0.541667 0.016667 0.125000 0.250000 0.566667 0.058333 0.166667 0.216667 0.591667 0.025000 0.075000 0.508333 0.416667 0.000000 0.550000 0.091667 0.158333 0.200000 0.000000 0.008333 0.991667 0.000000 0.275000 0.450000 0.275000 0.000000 0.108333 0.100000 0.791667 0.000000 0.066667 0.250000 0.658333 0.025000 0.191667 0.233333 0.525000 0.050000 0.008333 0.383333 0.541667 0.066667 0.158333 0.258333 0.550000 0.033333 0.250000 0.141667 0.608333 0.000000 0.000000 0.200000 0.633333 0.166667 0.208333 0.225000 0.541667 0.025000 0.100000 0.125000 0.775000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSGSGGSAGVGGGSGGGGG MEME-5 regular expression -------------------------------------------------------------------------------- [GC]GG[GC][CGA][GC][GC][GC][GC][CG][AT]G[CAG]G[GC][GC][GC][GC][GA][GC][GCA]G -------------------------------------------------------------------------------- Time 1829.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 width = 30 sites = 8 llr = 252 E-value = 3.9e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::::13:::::::98911:::13:a::a1a pos.-specific C 19614::9a:a89:1::::a:::::11:8: probability G 9:::18a1::::11118:a::98a:::::: matrix T :1494::::a:3::::19::a::::99:1: bits 2.1 * * * * * 1.9 * *** *** ** * * 1.7 * *** *** ** * * 1.5 ** * ***** ** * ***** ***** * Relative 1.3 ** * ***** ** * ***** ***** * Entropy 1.0 **** *********** *********** * (45.5 bits) 0.8 **** ************************* 0.6 **** ************************* 0.4 **** ************************* 0.2 ****************************** 0.0 ------------------------------ Multilevel GCCTCGGCCTCCCAAAGTGCTGGGATTACA consensus T TA T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr6:27684095-27684595 + 50 3.16e-17 tgatccgcaa gcctcggcctcccaaagtgctgggattaaa ggcgacagcc chr6:27602218-27602718 + 64 1.49e-16 tgatccacct gtcttggcctcccaaagtgctgagattaca ggtgtaa chr15:72107089-72107589 - 1 1.97e-16 TGATCTGCCT GCCTCAGCCTCCCAAAGTGCTAGGATTACA chr1:183032411-183032911 + 24 4.06e-16 tgatcctctt gccttggcctcccacagtgctgggattata ggcatgagtc chr18:3409073-3409573 - 70 7.20e-16 T GCTTTGGCCTCCCAGAATGCTGGGATTACA GGCATGAGTC chr11:65506799-65507299 + 25 9.33e-16 tgatccaccc gcctgggcctctgaaagtgctgggattaca ggtgtgagcc chr21:36210036-36210536 - 13 4.64e-14 GATTCACCTG CCTCAGGGCTCCCAAAGTGCTGAGATTACA GGCATGAGTC chr18:59265109-59265609 - 2 1.43e-12 CGATGCTTCT GCTTCAGCCTCTCGAGTAGCTGGGACCACA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27684095-27684595 3.2e-17 49_[+6]_21 chr6:27602218-27602718 1.5e-16 63_[+6]_7 chr15:72107089-72107589 2e-16 [-6]_70 chr1:183032411-183032911 4.1e-16 23_[+6]_47 chr18:3409073-3409573 7.2e-16 69_[-6]_1 chr11:65506799-65507299 9.3e-16 24_[+6]_46 chr21:36210036-36210536 4.6e-14 12_[-6]_58 chr18:59265109-59265609 1.4e-12 1_[-6]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCYTYGGCCTCCCAAAGTGCTGGGATTACA width=30 seqs=8 chr6:27684095-27684595 ( 50) GCCTCGGCCTCCCAAAGTGCTGGGATTAAA 1 chr6:27602218-27602718 ( 64) GTCTTGGCCTCCCAAAGTGCTGAGATTACA 1 chr15:72107089-72107589 ( 1) GCCTCAGCCTCCCAAAGTGCTAGGATTACA 1 chr1:183032411-183032911 ( 24) GCCTTGGCCTCCCACAGTGCTGGGATTATA 1 chr18:3409073-3409573 ( 70) GCTTTGGCCTCCCAGAATGCTGGGATTACA 1 chr11:65506799-65507299 ( 25) GCCTGGGCCTCTGAAAGTGCTGGGATTACA 1 chr21:36210036-36210536 ( 13) CCTCAGGGCTCCCAAAGTGCTGAGATTACA 1 chr18:59265109-59265609 ( 2) GCTTCAGCCTCTCGAGTAGCTGGGACCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.3783 E= 3.9e-026 -965 -108 172 -965 -965 172 -965 -91 -965 124 -965 67 -965 -108 -965 190 -91 50 -108 67 9 -965 150 -965 -965 -965 191 -965 -965 172 -108 -965 -965 191 -965 -965 -965 -965 -965 209 -965 191 -965 -965 -965 150 -965 9 -965 172 -108 -965 190 -965 -108 -965 167 -108 -108 -965 190 -965 -108 -965 -91 -965 150 -91 -91 -965 -965 190 -965 -965 191 -965 -965 191 -965 -965 -965 -965 -965 209 -91 -965 172 -965 9 -965 150 -965 -965 -965 191 -965 209 -965 -965 -965 -965 -108 -965 190 -965 -108 -965 190 209 -965 -965 -965 -91 150 -965 -91 209 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 8 E= 3.9e-026 0.000000 0.125000 0.875000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.625000 0.000000 0.375000 0.000000 0.125000 0.000000 0.875000 0.125000 0.375000 0.125000 0.375000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.875000 0.125000 0.000000 0.875000 0.000000 0.125000 0.000000 0.750000 0.125000 0.125000 0.000000 0.875000 0.000000 0.125000 0.000000 0.125000 0.000000 0.750000 0.125000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.125000 0.000000 0.875000 1.000000 0.000000 0.000000 0.000000 0.125000 0.750000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYTYGGCCTCCCAAAGTGCTGGGATTACA MEME-6 regular expression -------------------------------------------------------------------------------- GC[CT]T[CT][GA]GCCTC[CT]CAAAGTGCTG[GA]GATTACA -------------------------------------------------------------------------------- Time 2146.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCTCYBYCWCCYYCTCYYCCT MEME-7 width = 22 sites = 63 llr = 702 E-value = 6.7e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 Description -------------------------------------------------------------------------------- Simplified A 1::1:::::4:3:111:::1:1 pos.-specific C 6692854481854472844673 probability G 11:11:31111::111::1::1 matrix T 2316:53414:264:7254336 bits 2.1 1.9 1.7 1.5 * Relative 1.3 * * * Entropy 1.0 * * * * * (16.1 bits) 0.8 ** ** * * * * ** * 0.6 ** ** * *** ******* 0.4 ************* ******** 0.2 ********************** 0.0 ---------------------- Multilevel CCCTCTCTCTCCTCCTCTTCCT consensus T CGC A ACT CCTTC sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr14:103520869-10352136 + 76 2.23e-11 GCCGGCCcct ccctcctcctcctcctcctcct cGC chr5:173328002-173328502 + 40 9.18e-11 CTTTGTGctc ccctcttcctcctcctcctctt cctccttcgc chr3:17742323-17742823 + 14 2.28e-09 cctcctcccc tcctctttctctctctctccct cAGTCTGCAG chr12:54032617-54033117 + 11 2.75e-09 ttccctcttt ctctctctcactccctctcccc ctTGGTTGGG chr10:101442026-10144252 + 40 7.88e-09 ATTAGAAtct ctctctctctctctctctgtct ctgtgtgtat chr7:23470508-23471008 - 52 3.78e-08 TTAGCATTTT CCTTCTTCCTCCTCCCCCTTCT CAGAGTCCCT chr16:54286347-54286847 + 25 7.75e-08 cctttctcct ctccccttctctttccctttct cACGAGGGCT chr12:26832884-26833384 + 10 8.90e-08 CTCCAACAC CTTTGctcctcctcctcctcct tccctctccg chr11:120346998-12034749 + 40 8.90e-08 ctctctgtct ctctctgtttctctctctctct ctctctctGT chr20:48921351-48921851 + 12 1.02e-07 catgcccact cccctccccaccttctcttctt ccaccctcca chr1:234723899-234724399 - 7 1.33e-07 CCCTCCATTT CTCTCTCTCTCTCTCTCTCACA CACACA chr1:212608407-212608907 + 1 1.33e-07 . CCCTCCTCCACCCCCCTTCCTC CGCTCCGTTC chr6:683900-684400 - 66 1.33e-07 TCCTGTCTCC CCCTCCCTAACCTCATCCTTCT CCCTCTCTGG chr2:218568521-218569021 - 55 2.24e-07 CACCCCTGAC CCCACCCACACATCCTCTTCCC GCCTCCAGGG chr1:155000886-155001386 - 51 2.88e-07 GAGTCCAGGT CCCTCCCTCCCTCTTTCTCCCT CTCTCCCTCT chr15:72230297-72230797 - 43 3.25e-07 CGCCCCAGTT CCCTCTCGCCGCCCCTCCCCCT GCTTGCTGGT chr17:47649655-47650155 + 38 4.68e-07 GTCCGAATAt ccctccgccttcctccctccct cgctccctcc chr17:45148428-45148928 - 79 5.92e-07 . CCCGGCGCCACCTCCTCCCACT TCCACGGGTG chr17:17913910-17914410 - 72 7.46e-07 GGTGCCT GCCTCCTGCCCCTGCTCTTCCT GCAGCTGTCT chr17:67993857-67994357 - 8 9.35e-07 GCCTCCCCTT CCCTCTTCTTCCTTCTCGGCTT CCTCGGC chr12:74980528-74981028 - 27 1.04e-06 CCTTCCGTTG CCCTCTGCAACATGATCTTCTT GGAGGAGTTC chr12:54359135-54359635 - 25 1.17e-06 CTCGTTCGCA CGCTCTCTCTCTTTCGCTGTCT CTTACAGGCA chr5:41903959-41904459 - 18 1.30e-06 GGTCATTTTT CCCTCCTGGACTTCCCTTCCCT CCCATAATCC chr9:136848061-136848561 - 12 1.30e-06 CCAACTAGCT CTCTCCCTCACCTGCTCGCACC ACGCTTTGCC chr19:1205127-1205627 - 2 1.45e-06 CTACCAGAGC CCCTCCCCCGCATCCCCCTTTG G chr11:128061340-12806184 - 20 1.45e-06 CCCCTTCCCC CTCACTGTTCCATCCTCTTTCT CCCCACCTCC chr6:52994917-52995417 - 32 1.79e-06 CTCTCTGAGT CTCACTCTCGCATTCTTCCCTC ACTCCCCCAG chr1:229221223-229221723 + 11 1.99e-06 TGGCTGCCGT CCCTGCCCCACACTCACCCCCA CGACAGCCAT chr19:40603512-40604012 - 68 2.71e-06 GTCCTGCGAG GGCACCCCCTCCCTCTCTCTCC CGGGGCTGCA chr21:39313560-39314060 - 28 2.71e-06 AGGTCTTTGC CTCCGCGTCACTTTCTCCTCAT CGAGTCCCCG chr16:30065243-30065743 - 66 2.71e-06 TCGCTAGGGC CCTCCCTTCTGCTCCTTTCCCC CAGCCTGGCG chr6:26571578-26572078 - 51 2.99e-06 TTATGTGGTT TCCTCTCCCACCTTACCCTTTG GCCTTTACTC chr1:233241718-233242218 + 20 3.31e-06 TTTATTGCCG TTTTctgcctgcttatcttctt tgggaaccag chr1:153566465-153566965 + 70 3.31e-06 CAGGCAGTGA CTCAGCGGCACACCCTCCTCCC CCAGGGCCA chr14:101761035-10176153 + 61 3.65e-06 AATGTGCATT TCCTACGTCTCACGCTCTGTCT TGCGCCTCCA chr2:191321758-191322258 + 12 4.02e-06 TGACCTCACC CCTGCTTCCACATACTCTTCCA TTTCAGTTAT chr2:73233401-73233901 + 18 4.43e-06 CGACGATTAG CCTTCTCCCAGCTGCGCTTCCC TCCTCCCAGC chr1:155001608-155002108 + 79 4.43e-06 GAGCCGAAGG CCTGGTGGCTCCCCCTCCCCCT chr14:20657035-20657535 - 46 4.87e-06 CCACTACTTC CCCACCCTGTGCTCCTTCGCTT TTCTTCACAG chr19:18223988-18224488 - 63 5.36e-06 TCCTGTCGGT GCCGCTTCCGCCTGCCCTTCTT GAAAACCCAC chr19:44844629-44845129 - 4 5.36e-06 GACCTGGTCA CTCCCCGCGTCCTTGTCCCACT TCC chr5:173057131-173057631 - 2 6.46e-06 CCTCGCCCTT TGCCCTGTCTCCTCCCCTCTCA G chr1:7300852-7301352 - 45 7.76e-06 TGGCTGTGGC TCCTCTGTCACCCTCACGTCAT ATTTCTGGGC chr17:7885870-7886370 + 21 9.28e-06 GTGGCTGCCA TTCACTGTCACTCACTCTCTCG CTGAAACCAC chr17:50866476-50866976 - 25 1.01e-05 GCGTCAGCCG CCCTACCCCACCCCTTTCTCTC TCATTGGCAC chr12:120528712-12052921 + 33 1.01e-05 TTCACCTTTG CCCCCCTTCTCCTCTTCCGACA CAGTCTCAAA chr12:54017272-54017772 - 77 1.01e-05 TT CTCTCCCCCCGCCAATTTTCCT CCCCATAATT chr11:82900364-82900864 + 37 1.21e-05 CCCCGAGGAC ACCGCCTCCACTCCACTTTCCT CTCGTGCCAT chr6:43627221-43627721 - 52 1.21e-05 GGAGCTCTTC TCCTCTCTCACCTAGATCTTCT CGGTCATCAG chr1:27348762-27349262 + 65 1.32e-05 ATGACCTTTG ACCTCTTCCTCACCAGCCCCCG TACTGTGACC chr5:67015611-67016111 + 3 1.32e-05 GC ATCTCTCTGTGACCCTTTTACT GCTTTGGGAG chr19:45641364-45641864 + 26 1.32e-05 ACATTTCTCG ACCATTTCCTCCCTATCTCTTT CTGCGGCTTG chr15:77633354-77633854 + 70 1.43e-05 AGGGCGGCAG GCCTCTCTGGCCCGCTCCGTCC GGAGGCCCT chr3:72123960-72124460 - 68 1.43e-05 CAGTCCCCTT CTCTGCTTGACTTTGTTTTCCC TGCAGGTCAC chr13:112689540-11269004 - 60 1.69e-05 GGGGAGGAAC CCCCCTGTTGCTTCCGCCTCCC GGGGCGCAGG chr12:114914164-11491466 - 28 1.84e-05 TTGCTAATAA TTCTTTCCCTGACCCACTCTCT GGCACATTTG chr4:1043527-1044027 + 44 2.16e-05 GATGACTCAC ACCCATCACTCATCCCCTTCCT GAGTCAGCCG chr16:3152163-3152663 - 66 2.54e-05 GTCTTCGTCC TCCTCCCCCGCATTGTCCGTTA GACCAAGGGT chr17:21457041-21457541 - 13 2.74e-05 TGCATAGGAG GGCACTGTCACCCTCCCTCCTG CTGTGCTGAT chr9:136546131-136546631 - 47 2.74e-05 CCCTCCCCAT TCCGCCCCGGGCTCCTCCGCTT ATTCACATGC chr6:43769517-43770017 + 78 2.74e-05 ATTCCAATAG ATCTGTGTGTCCCTCTCCCCAC C chr6:37819284-37819784 - 4 3.73e-05 GGGCCCTGCT GTCTCCGTAACACCGTCCCCTC CCC chr1:211675734-211676234 + 31 5.37e-05 ACTACCTACT CTCCCCGGCACACGCATTCCTC GCTCAGGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:103520869-10352136 2.2e-11 75_[+7]_3 chr5:173328002-173328502 9.2e-11 39_[+7]_39 chr3:17742323-17742823 2.3e-09 13_[+7]_65 chr12:54032617-54033117 2.7e-09 10_[+7]_68 chr10:101442026-10144252 7.9e-09 39_[+7]_39 chr7:23470508-23471008 3.8e-08 51_[-7]_27 chr16:54286347-54286847 7.7e-08 24_[+7]_54 chr12:26832884-26833384 8.9e-08 9_[+7]_69 chr11:120346998-12034749 8.9e-08 39_[+7]_39 chr20:48921351-48921851 1e-07 11_[+7]_67 chr1:234723899-234724399 1.3e-07 6_[-7]_72 chr1:212608407-212608907 1.3e-07 [+7]_78 chr6:683900-684400 1.3e-07 65_[-7]_13 chr2:218568521-218569021 2.2e-07 54_[-7]_24 chr1:155000886-155001386 2.9e-07 50_[-7]_28 chr15:72230297-72230797 3.3e-07 42_[-7]_36 chr17:47649655-47650155 4.7e-07 37_[+7]_41 chr17:45148428-45148928 5.9e-07 78_[-7] chr17:17913910-17914410 7.5e-07 71_[-7]_7 chr17:67993857-67994357 9.3e-07 7_[-7]_71 chr12:74980528-74981028 1e-06 26_[-7]_52 chr12:54359135-54359635 1.2e-06 24_[-7]_54 chr5:41903959-41904459 1.3e-06 17_[-7]_61 chr9:136848061-136848561 1.3e-06 11_[-7]_67 chr19:1205127-1205627 1.4e-06 1_[-7]_77 chr11:128061340-12806184 1.4e-06 19_[-7]_59 chr6:52994917-52995417 1.8e-06 31_[-7]_47 chr1:229221223-229221723 2e-06 10_[+7]_68 chr19:40603512-40604012 2.7e-06 67_[-7]_11 chr21:39313560-39314060 2.7e-06 27_[-7]_51 chr16:30065243-30065743 2.7e-06 65_[-7]_13 chr6:26571578-26572078 3e-06 50_[-7]_28 chr1:233241718-233242218 3.3e-06 19_[+7]_59 chr1:153566465-153566965 3.3e-06 69_[+7]_9 chr14:101761035-10176153 3.6e-06 60_[+7]_18 chr2:191321758-191322258 4e-06 11_[+7]_67 chr2:73233401-73233901 4.4e-06 17_[+7]_61 chr1:155001608-155002108 4.4e-06 78_[+7] chr14:20657035-20657535 4.9e-06 45_[-7]_33 chr19:18223988-18224488 5.4e-06 62_[-7]_16 chr19:44844629-44845129 5.4e-06 3_[-7]_75 chr5:173057131-173057631 6.5e-06 1_[-7]_77 chr1:7300852-7301352 7.8e-06 44_[-7]_34 chr17:7885870-7886370 9.3e-06 20_[+7]_58 chr17:50866476-50866976 1e-05 24_[-7]_54 chr12:120528712-12052921 1e-05 32_[+7]_46 chr12:54017272-54017772 1e-05 76_[-7]_2 chr11:82900364-82900864 1.2e-05 36_[+7]_42 chr6:43627221-43627721 1.2e-05 51_[-7]_27 chr1:27348762-27349262 1.3e-05 64_[+7]_14 chr5:67015611-67016111 1.3e-05 2_[+7]_76 chr19:45641364-45641864 1.3e-05 25_[+7]_53 chr15:77633354-77633854 1.4e-05 69_[+7]_9 chr3:72123960-72124460 1.4e-05 67_[-7]_11 chr13:112689540-11269004 1.7e-05 59_[-7]_19 chr12:114914164-11491466 1.8e-05 27_[-7]_51 chr4:1043527-1044027 2.2e-05 43_[+7]_35 chr16:3152163-3152663 2.5e-05 65_[-7]_13 chr17:21457041-21457541 2.7e-05 12_[-7]_66 chr9:136546131-136546631 2.7e-05 46_[-7]_32 chr6:43769517-43770017 2.7e-05 77_[+7]_1 chr6:37819284-37819784 3.7e-05 3_[-7]_75 chr1:211675734-211676234 5.4e-05 30_[+7]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCTCYBYCWCCYYCTCYYCCT width=22 seqs=63 chr14:103520869-10352136 ( 76) CCCTCCTCCTCCTCCTCCTCCT 1 chr5:173328002-173328502 ( 40) CCCTCTTCCTCCTCCTCCTCTT 1 chr3:17742323-17742823 ( 14) TCCTCTTTCTCTCTCTCTCCCT 1 chr12:54032617-54033117 ( 11) CTCTCTCTCACTCCCTCTCCCC 1 chr10:101442026-10144252 ( 40) CTCTCTCTCTCTCTCTCTGTCT 1 chr7:23470508-23471008 ( 52) CCTTCTTCCTCCTCCCCCTTCT 1 chr16:54286347-54286847 ( 25) CTCCCCTTCTCTTTCCCTTTCT 1 chr12:26832884-26833384 ( 10) CTTTGCTCCTCCTCCTCCTCCT 1 chr11:120346998-12034749 ( 40) CTCTCTGTTTCTCTCTCTCTCT 1 chr20:48921351-48921851 ( 12) CCCCTCCCCACCTTCTCTTCTT 1 chr1:234723899-234724399 ( 7) CTCTCTCTCTCTCTCTCTCACA 1 chr1:212608407-212608907 ( 1) CCCTCCTCCACCCCCCTTCCTC 1 chr6:683900-684400 ( 66) CCCTCCCTAACCTCATCCTTCT 1 chr2:218568521-218569021 ( 55) CCCACCCACACATCCTCTTCCC 1 chr1:155000886-155001386 ( 51) CCCTCCCTCCCTCTTTCTCCCT 1 chr15:72230297-72230797 ( 43) CCCTCTCGCCGCCCCTCCCCCT 1 chr17:47649655-47650155 ( 38) CCCTCCGCCTTCCTCCCTCCCT 1 chr17:45148428-45148928 ( 79) CCCGGCGCCACCTCCTCCCACT 1 chr17:17913910-17914410 ( 72) GCCTCCTGCCCCTGCTCTTCCT 1 chr17:67993857-67994357 ( 8) CCCTCTTCTTCCTTCTCGGCTT 1 chr12:74980528-74981028 ( 27) CCCTCTGCAACATGATCTTCTT 1 chr12:54359135-54359635 ( 25) CGCTCTCTCTCTTTCGCTGTCT 1 chr5:41903959-41904459 ( 18) CCCTCCTGGACTTCCCTTCCCT 1 chr9:136848061-136848561 ( 12) CTCTCCCTCACCTGCTCGCACC 1 chr19:1205127-1205627 ( 2) CCCTCCCCCGCATCCCCCTTTG 1 chr11:128061340-12806184 ( 20) CTCACTGTTCCATCCTCTTTCT 1 chr6:52994917-52995417 ( 32) CTCACTCTCGCATTCTTCCCTC 1 chr1:229221223-229221723 ( 11) CCCTGCCCCACACTCACCCCCA 1 chr19:40603512-40604012 ( 68) GGCACCCCCTCCCTCTCTCTCC 1 chr21:39313560-39314060 ( 28) CTCCGCGTCACTTTCTCCTCAT 1 chr16:30065243-30065743 ( 66) CCTCCCTTCTGCTCCTTTCCCC 1 chr6:26571578-26572078 ( 51) TCCTCTCCCACCTTACCCTTTG 1 chr1:233241718-233242218 ( 20) TTTTCTGCCTGCTTATCTTCTT 1 chr1:153566465-153566965 ( 70) CTCAGCGGCACACCCTCCTCCC 1 chr14:101761035-10176153 ( 61) TCCTACGTCTCACGCTCTGTCT 1 chr2:191321758-191322258 ( 12) CCTGCTTCCACATACTCTTCCA 1 chr2:73233401-73233901 ( 18) CCTTCTCCCAGCTGCGCTTCCC 1 chr1:155001608-155002108 ( 79) CCTGGTGGCTCCCCCTCCCCCT 1 chr14:20657035-20657535 ( 46) CCCACCCTGTGCTCCTTCGCTT 1 chr19:18223988-18224488 ( 63) GCCGCTTCCGCCTGCCCTTCTT 1 chr19:44844629-44845129 ( 4) CTCCCCGCGTCCTTGTCCCACT 1 chr5:173057131-173057631 ( 2) TGCCCTGTCTCCTCCCCTCTCA 1 chr1:7300852-7301352 ( 45) TCCTCTGTCACCCTCACGTCAT 1 chr17:7885870-7886370 ( 21) TTCACTGTCACTCACTCTCTCG 1 chr17:50866476-50866976 ( 25) CCCTACCCCACCCCTTTCTCTC 1 chr12:120528712-12052921 ( 33) CCCCCCTTCTCCTCTTCCGACA 1 chr12:54017272-54017772 ( 77) CTCTCCCCCCGCCAATTTTCCT 1 chr11:82900364-82900864 ( 37) ACCGCCTCCACTCCACTTTCCT 1 chr6:43627221-43627721 ( 52) TCCTCTCTCACCTAGATCTTCT 1 chr1:27348762-27349262 ( 65) ACCTCTTCCTCACCAGCCCCCG 1 chr5:67015611-67016111 ( 3) ATCTCTCTGTGACCCTTTTACT 1 chr19:45641364-45641864 ( 26) ACCATTTCCTCCCTATCTCTTT 1 chr15:77633354-77633854 ( 70) GCCTCTCTGGCCCGCTCCGTCC 1 chr3:72123960-72124460 ( 68) CTCTGCTTGACTTTGTTTTCCC 1 chr13:112689540-11269004 ( 60) CCCCCTGTTGCTTCCGCCTCCC 1 chr12:114914164-11491466 ( 28) TTCTTTCCCTGACCCACTCTCT 1 chr4:1043527-1044027 ( 44) ACCCATCACTCATCCCCTTCCT 1 chr16:3152163-3152663 ( 66) TCCTCCCCCGCATTGTCCGTTA 1 chr17:21457041-21457541 ( 13) GGCACTGTCACCCTCCCTCCTG 1 chr9:136546131-136546631 ( 47) TCCGCCCCGGGCTCCTCCGCTT 1 chr6:43769517-43770017 ( 78) ATCTGTGTGTCCCTCTCCCCAC 1 chr6:37819284-37819784 ( 4) GTCTCCGTAACACCGTCCCCTC 1 chr1:211675734-211676234 ( 31) CTCCCCGGCACACGCATTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.53517 E= 6.7e-021 -130 126 -148 -43 -1262 119 -206 51 -1262 174 -1262 -108 -72 -74 -148 136 -230 155 -106 -230 -1262 89 -1262 111 -1262 64 19 28 -289 69 -148 92 -230 152 -106 -189 70 -174 -125 87 -1262 167 -89 -388 11 98 -1262 -8 -1262 74 -1262 124 -189 74 -106 64 -89 149 -174 -230 -156 -48 -206 151 -1262 161 -1262 -30 -1262 64 -248 120 -1262 64 -89 92 -130 122 -1262 28 -230 133 -1262 28 -130 -6 -174 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 63 E= 6.7e-021 0.095238 0.634921 0.095238 0.174603 0.000000 0.603175 0.063492 0.333333 0.000000 0.888889 0.000000 0.111111 0.142857 0.158730 0.095238 0.603175 0.047619 0.777778 0.126984 0.047619 0.000000 0.492063 0.000000 0.507937 0.000000 0.412698 0.301587 0.285714 0.031746 0.428571 0.095238 0.444444 0.047619 0.761905 0.126984 0.063492 0.380952 0.079365 0.111111 0.428571 0.000000 0.841270 0.142857 0.015873 0.253968 0.523810 0.000000 0.222222 0.000000 0.444444 0.000000 0.555556 0.063492 0.444444 0.126984 0.365079 0.126984 0.746032 0.079365 0.047619 0.079365 0.190476 0.063492 0.666667 0.000000 0.809524 0.000000 0.190476 0.000000 0.412698 0.047619 0.539683 0.000000 0.412698 0.142857 0.444444 0.095238 0.619048 0.000000 0.285714 0.047619 0.666667 0.000000 0.285714 0.095238 0.253968 0.079365 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTCYBYCWCCYYCTCYYCCT MEME-7 regular expression -------------------------------------------------------------------------------- C[CT]CTC[TC][CGT][TC]C[TA]C[CAT][TC][CT]CTC[TC][TC][CT][CT][TC] -------------------------------------------------------------------------------- Time 2463.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRTGAKGTCAY MEME-8 width = 12 sites = 52 llr = 546 E-value = 1.8e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 Description -------------------------------------------------------------------------------- Simplified A 214:1a1::2a: pos.-specific C 112:::1::8:4 probability G 674:8:3a:::1 matrix T 1::a1:5:a::5 bits 2.1 * * * 1.9 * * ** * 1.7 * * ** * 1.5 * * ** * Relative 1.3 * * **** Entropy 1.0 *** **** (15.1 bits) 0.8 * *** **** 0.6 * *** ***** 0.4 ****** ***** 0.2 ************ 0.0 ------------ Multilevel GGATGATGTCAT consensus G G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:78558322-78558822 + 83 5.17e-08 CCTTATGGGT GGATGATGTCAT CATTGT chr20:3173057-3173557 - 35 5.17e-08 GAGAGGAGGC GGATGATGTCAT GGATGCTTCG chr17:7836626-7837126 + 33 1.68e-07 AGGTGGCCTG GGATGATGTCAC TAGTGCACGT chr19:38667025-38667525 + 32 1.68e-07 GGCAAACCTA GGGTGATGTCAT TGTTCGAAGC chr15:70494069-70494569 + 81 2.92e-07 tgacaacccg ggatgaggtcat cactatca chr1:156660096-156660596 + 43 4.70e-07 GAGGTTGAGA GGATGAGGTCAC TCAGAGAACT chr1:232670256-232670756 - 81 4.70e-07 TTGCTGCA GGATGAGGTCAC CTGTCTCATG chr3:58049193-58049693 - 7 4.70e-07 CATTCTTCAT GGGTGAGGTCAT ATTCAG chr1:220118967-220119467 + 16 5.28e-07 CAGAATGATT GGCTGATGTCAT AGTTGCTCAT chr10:94673526-94674026 - 10 6.32e-07 TCCTGGGCCA AGGTGATGTCAT CTGGGATGT chr17:74514524-74515024 + 54 6.32e-07 atcatgtgac aggtgatgtcat gtgatgggtg chr3:9976982-9977482 + 52 7.52e-07 TTCCTAAGAA GGGTGAGGTCAC CATGAGAGCA chr5:158451532-158452032 + 66 9.28e-07 CTGCCAAAGC CGATGATGTCAT CATCACTAGC chr22:18057601-18058101 - 29 9.28e-07 AACAGTGAGA GGATGACGTCAT GGGCCTTGAG chr6:56529512-56530012 + 41 1.28e-06 TTATTGTGAT TGATGATGTCAT CTTCTAAGGC chr22:19984229-19984729 - 60 2.19e-06 CCTGCCACCC GGGTGAAGTCAT CCCTCGTTTT chr5:139517845-139518345 - 19 2.19e-06 GCCCCGGGCC GGATGAAGTCAC CGGCCGGAGG chr10:5548777-5549277 + 68 2.61e-06 CTCTATCTCA GGGTGACGTCAC CTCATACACA chr22:31055416-31055916 + 80 2.61e-06 TCCTCGCTGG GCATGATGTCAC CACAATTGT chr17:82065712-82066212 + 19 2.75e-06 ggaggtcaga ggctgaggtcaC CACCGTACCC chr17:71163514-71164014 - 39 2.75e-06 AGCTTCAGTT GGCTGAGGTCAC CTTGGTTCAT chr9:85743217-85743717 - 83 3.14e-06 GATGAA GAGTGATGTCAC ATTCCCAGGG chr1:233112860-233113360 - 60 3.60e-06 GGTGATGACA AGCTGATGTCAC CCAACTGGCC chr19:50896568-50897068 - 7 3.60e-06 GTGTAGCCAA GCGTGATGTCAC ATGGGA chr19:45455696-45456196 - 38 3.60e-06 TGCCCTGGCC GGGTGATGTCAG CGGCCAGGTA chr17:74981822-74982322 - 21 4.76e-06 CAGGACATTG GAGTGAGGTCAT CTGCTGCCCA chr3:100002792-100003292 + 8 5.41e-06 AGAGGAG GGATGACGTAAT GGATTGTGCA chr15:67792434-67792934 + 27 6.06e-06 AGTCATTCCA AGATTATGTCAT TGGATGTCAT chr5:32489750-32490250 + 76 6.06e-06 TTGGCCAAAT AGATTATGTCAT TTTGACTATT chr14:101073135-10107363 - 38 9.21e-06 GTTTCATAGG TAATGATGTCAT TTATGAGGCT chr10:60951290-60951790 - 38 1.03e-05 AGTGTTTAAT GGCTTATGTCAC CCACATGTGA chr17:56592644-56593144 - 14 1.03e-05 GCGTTGCGCA GCGTGATGTAAT TCTTAGGAAG chr17:27353541-27354041 - 88 1.11e-05 A CGATGATGTCAG CGGAGGAAAG chr6:142885234-142885734 + 36 1.23e-05 GTTGTCCATT CGCTGAGGTCAC AGATAAAGCT chr8:37359513-37360013 - 14 1.23e-05 TACTCCAGCC CGCTGAGGTCAC CTTCCTGGCC chr5:14156521-14157021 + 88 1.59e-05 CAAACAAAAC AGATGAAGTAAT G chr1:212608407-212608907 - 63 1.59e-05 GCCAGTCCCA GGCTGACGTAAT GCTATTAATA chr4:140756863-140757363 - 64 2.00e-05 TCAAGGAAAG AAGTGATGTAAT GCACTTAGCT chr1:228377889-228378389 - 57 2.00e-05 GGTGCAGGGG CCGTGAGGTCAT CCTCGGGTGG chr6:41767104-41767604 - 38 2.14e-05 ACAGGCCAAG AGGTGACGTAAC TTGCCTCAGG chr19:18364871-18365371 + 78 2.14e-05 AAACTTCCTC AGATGATGTAAG TTCAGCCACA chr10:112793338-11279383 + 56 2.29e-05 ACATGTATCA TGCTGAAGTCAT AAAAATGAAG chr6:10403513-10404013 + 69 2.29e-05 aacctcgcag gggtgaggtaag aatCCCTGGC chr6:154852591-154853091 - 10 2.67e-05 AAAGTAAACA GAGTTAGGTCAT GATGAGTCC chr10:22552798-22553298 - 30 2.86e-05 TTTCCCTGTC ACATGAGGTAAT TCTGCTGGGG chr3:57555823-57556323 - 4 3.07e-05 GAAGTGGATA GGGTGGTGTCAC GTG chr19:1021419-1021919 + 61 3.27e-05 CCGGATCCTG CCATGACGTCAC AGGGCCAGTA chr3:61821758-61822258 + 57 3.90e-05 TCATCATCAG Ggattaagtaac tgcaccatgg chr1:186375333-186375833 - 16 4.17e-05 GGGGCTTTGA CGGTAAGGTCAC CAGCTCTTCA chr10:87845961-87846461 + 38 4.91e-05 gacagaaacg tcattatgtcac gcaagactAG chr10:75379136-75379636 + 51 5.39e-05 TTCGGATGGA TAATAATGTCAT TTGCTTGATG chr1:150876709-150877209 + 33 5.68e-05 GTCAATGACC GAGTAACGTCAT TGAAATGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:78558322-78558822 5.2e-08 82_[+8]_6 chr20:3173057-3173557 5.2e-08 34_[-8]_54 chr17:7836626-7837126 1.7e-07 32_[+8]_56 chr19:38667025-38667525 1.7e-07 31_[+8]_57 chr15:70494069-70494569 2.9e-07 80_[+8]_8 chr1:156660096-156660596 4.7e-07 42_[+8]_46 chr1:232670256-232670756 4.7e-07 80_[-8]_8 chr3:58049193-58049693 4.7e-07 6_[-8]_82 chr1:220118967-220119467 5.3e-07 15_[+8]_73 chr10:94673526-94674026 6.3e-07 9_[-8]_79 chr17:74514524-74515024 6.3e-07 53_[+8]_35 chr3:9976982-9977482 7.5e-07 51_[+8]_37 chr5:158451532-158452032 9.3e-07 65_[+8]_23 chr22:18057601-18058101 9.3e-07 28_[-8]_60 chr6:56529512-56530012 1.3e-06 40_[+8]_48 chr22:19984229-19984729 2.2e-06 59_[-8]_29 chr5:139517845-139518345 2.2e-06 18_[-8]_70 chr10:5548777-5549277 2.6e-06 67_[+8]_21 chr22:31055416-31055916 2.6e-06 79_[+8]_9 chr17:82065712-82066212 2.7e-06 18_[+8]_70 chr17:71163514-71164014 2.7e-06 38_[-8]_50 chr9:85743217-85743717 3.1e-06 82_[-8]_6 chr1:233112860-233113360 3.6e-06 59_[-8]_29 chr19:50896568-50897068 3.6e-06 6_[-8]_82 chr19:45455696-45456196 3.6e-06 37_[-8]_51 chr17:74981822-74982322 4.8e-06 20_[-8]_68 chr3:100002792-100003292 5.4e-06 7_[+8]_81 chr15:67792434-67792934 6.1e-06 26_[+8]_62 chr5:32489750-32490250 6.1e-06 75_[+8]_13 chr14:101073135-10107363 9.2e-06 37_[-8]_51 chr10:60951290-60951790 1e-05 37_[-8]_51 chr17:56592644-56593144 1e-05 13_[-8]_75 chr17:27353541-27354041 1.1e-05 87_[-8]_1 chr6:142885234-142885734 1.2e-05 35_[+8]_53 chr8:37359513-37360013 1.2e-05 13_[-8]_75 chr5:14156521-14157021 1.6e-05 87_[+8]_1 chr1:212608407-212608907 1.6e-05 62_[-8]_26 chr4:140756863-140757363 2e-05 63_[-8]_25 chr1:228377889-228378389 2e-05 56_[-8]_32 chr6:41767104-41767604 2.1e-05 37_[-8]_51 chr19:18364871-18365371 2.1e-05 77_[+8]_11 chr10:112793338-11279383 2.3e-05 55_[+8]_33 chr6:10403513-10404013 2.3e-05 68_[+8]_20 chr6:154852591-154853091 2.7e-05 9_[-8]_79 chr10:22552798-22553298 2.9e-05 29_[-8]_59 chr3:57555823-57556323 3.1e-05 3_[-8]_85 chr19:1021419-1021919 3.3e-05 60_[+8]_28 chr3:61821758-61822258 3.9e-05 56_[+8]_32 chr1:186375333-186375833 4.2e-05 15_[-8]_73 chr10:87845961-87846461 4.9e-05 37_[+8]_51 chr10:75379136-75379636 5.4e-05 50_[+8]_38 chr1:150876709-150877209 5.7e-05 32_[+8]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRTGAKGTCAY width=12 seqs=52 chr17:78558322-78558822 ( 83) GGATGATGTCAT 1 chr20:3173057-3173557 ( 35) GGATGATGTCAT 1 chr17:7836626-7837126 ( 33) GGATGATGTCAC 1 chr19:38667025-38667525 ( 32) GGGTGATGTCAT 1 chr15:70494069-70494569 ( 81) GGATGAGGTCAT 1 chr1:156660096-156660596 ( 43) GGATGAGGTCAC 1 chr1:232670256-232670756 ( 81) GGATGAGGTCAC 1 chr3:58049193-58049693 ( 7) GGGTGAGGTCAT 1 chr1:220118967-220119467 ( 16) GGCTGATGTCAT 1 chr10:94673526-94674026 ( 10) AGGTGATGTCAT 1 chr17:74514524-74515024 ( 54) AGGTGATGTCAT 1 chr3:9976982-9977482 ( 52) GGGTGAGGTCAC 1 chr5:158451532-158452032 ( 66) CGATGATGTCAT 1 chr22:18057601-18058101 ( 29) GGATGACGTCAT 1 chr6:56529512-56530012 ( 41) TGATGATGTCAT 1 chr22:19984229-19984729 ( 60) GGGTGAAGTCAT 1 chr5:139517845-139518345 ( 19) GGATGAAGTCAC 1 chr10:5548777-5549277 ( 68) GGGTGACGTCAC 1 chr22:31055416-31055916 ( 80) GCATGATGTCAC 1 chr17:82065712-82066212 ( 19) GGCTGAGGTCAC 1 chr17:71163514-71164014 ( 39) GGCTGAGGTCAC 1 chr9:85743217-85743717 ( 83) GAGTGATGTCAC 1 chr1:233112860-233113360 ( 60) AGCTGATGTCAC 1 chr19:50896568-50897068 ( 7) GCGTGATGTCAC 1 chr19:45455696-45456196 ( 38) GGGTGATGTCAG 1 chr17:74981822-74982322 ( 21) GAGTGAGGTCAT 1 chr3:100002792-100003292 ( 8) GGATGACGTAAT 1 chr15:67792434-67792934 ( 27) AGATTATGTCAT 1 chr5:32489750-32490250 ( 76) AGATTATGTCAT 1 chr14:101073135-10107363 ( 38) TAATGATGTCAT 1 chr10:60951290-60951790 ( 38) GGCTTATGTCAC 1 chr17:56592644-56593144 ( 14) GCGTGATGTAAT 1 chr17:27353541-27354041 ( 88) CGATGATGTCAG 1 chr6:142885234-142885734 ( 36) CGCTGAGGTCAC 1 chr8:37359513-37360013 ( 14) CGCTGAGGTCAC 1 chr5:14156521-14157021 ( 88) AGATGAAGTAAT 1 chr1:212608407-212608907 ( 63) GGCTGACGTAAT 1 chr4:140756863-140757363 ( 64) AAGTGATGTAAT 1 chr1:228377889-228378389 ( 57) CCGTGAGGTCAT 1 chr6:41767104-41767604 ( 38) AGGTGACGTAAC 1 chr19:18364871-18365371 ( 78) AGATGATGTAAG 1 chr10:112793338-11279383 ( 56) TGCTGAAGTCAT 1 chr6:10403513-10404013 ( 69) GGGTGAGGTAAG 1 chr6:154852591-154853091 ( 10) GAGTTAGGTCAT 1 chr10:22552798-22553298 ( 30) ACATGAGGTAAT 1 chr3:57555823-57556323 ( 4) GGGTGGTGTCAC 1 chr19:1021419-1021919 ( 61) CCATGACGTCAC 1 chr3:61821758-61822258 ( 57) GGATTAAGTAAC 1 chr1:186375333-186375833 ( 16) CGGTAAGGTCAC 1 chr10:87845961-87846461 ( 38) TCATTATGTCAC 1 chr10:75379136-75379636 ( 51) TAATAATGTCAT 1 chr1:150876709-150877209 ( 33) GAGTAACGTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.1679 E= 1.8e-015 -29 -98 112 -129 -80 -98 146 -1234 91 -62 54 -1234 -1234 -1234 -1234 209 -202 -1234 164 -102 206 -1234 -378 -1234 -129 -98 12 103 -1234 -1234 191 -1234 -1234 -1234 -1234 209 -29 161 -1234 -1234 209 -1234 -1234 -1234 -1234 61 -178 114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 52 E= 1.8e-015 0.192308 0.134615 0.576923 0.096154 0.134615 0.134615 0.730769 0.000000 0.442308 0.173077 0.384615 0.000000 0.000000 0.000000 0.000000 1.000000 0.057692 0.000000 0.826923 0.115385 0.980769 0.000000 0.019231 0.000000 0.096154 0.134615 0.288462 0.480769 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.192308 0.807692 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.403846 0.076923 0.519231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTGAKGTCAY MEME-8 regular expression -------------------------------------------------------------------------------- GG[AG]TGA[TG]GTCA[TC] -------------------------------------------------------------------------------- Time 2772.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGAAACYSYRTMTYTACTWAA MEME-9 width = 22 sites = 8 llr = 164 E-value = 5.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::a9931::4:4:1:9:16aa pos.-specific C :3::1:8565::515::a1::: probability G a:9::1::4:6:1:111:1::: matrix T :81::::4:5:a:939::64:: bits 2.1 * * ** 1.9 * * * * ** 1.7 * * * * ** 1.5 * **** * * *** ** Relative 1.3 ****** * * *** ** Entropy 1.0 ******* **** * *** *** (29.6 bits) 0.8 ******* **** * *** *** 0.6 ************** *** *** 0.4 ************** ******* 0.2 ********************** 0.0 ---------------------- Multilevel GTGAAACCCCGTCTCTACTAAA consensus C ATGTA A T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr15:72107089-72107589 + 79 4.30e-14 ggtcaacatg gtgaaaccctgtctctactaaa chr6:27671963-27672463 - 12 9.14e-14 GACCAACACG GTGAAACCCCGTCTCTACTAAA AATGCAGAAA chr1:61057583-61058083 - 9 9.14e-14 GACCCACATG GTGAAACCCCGTCTCTACTAAA GTTAGCCA chr3:190424480-190424980 + 62 6.61e-12 ggccaacatg gcgaaaccccatctctactaaa aataccaaaa chr1:85297855-85298355 + 25 1.51e-09 AGGGTTTAAA GCGAAACTGTGTGTTGACTTAA TGGTATGACT chr6:52243294-52243794 + 70 3.34e-09 agtttccttg gttaaaatgtatatgtacataa tccctaaag chr5:17326417-17326917 - 1 5.01e-09 GCTGGTAGTG GTGAAGATCTGTATATGCCAAA chr12:122399812-12240031 - 23 7.99e-09 GGGACAGCAA GTGACACAGCATACTTACGTAA CCGTGACTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:72107089-72107589 4.3e-14 78_[+9] chr6:27671963-27672463 9.1e-14 11_[-9]_67 chr1:61057583-61058083 9.1e-14 8_[-9]_70 chr3:190424480-190424980 6.6e-12 61_[+9]_17 chr1:85297855-85298355 1.5e-09 24_[+9]_54 chr6:52243294-52243794 3.3e-09 69_[+9]_9 chr5:17326417-17326917 5e-09 [-9]_78 chr12:122399812-12240031 8e-09 22_[-9]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGAAACYSYRTMTYTACTWAA width=22 seqs=8 chr15:72107089-72107589 ( 79) GTGAAACCCTGTCTCTACTAAA 1 chr6:27671963-27672463 ( 12) GTGAAACCCCGTCTCTACTAAA 1 chr1:61057583-61058083 ( 9) GTGAAACCCCGTCTCTACTAAA 1 chr3:190424480-190424980 ( 62) GCGAAACCCCATCTCTACTAAA 1 chr1:85297855-85298355 ( 25) GCGAAACTGTGTGTTGACTTAA 1 chr6:52243294-52243794 ( 70) GTTAAAATGTATATGTACATAA 1 chr5:17326417-17326917 ( 1) GTGAAGATCTGTATATGCCAAA 1 chr12:122399812-12240031 ( 23) GTGACACAGCATACTTACGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.2694 E= 5.8e-002 -965 -965 191 -965 -965 -9 -965 167 -965 -965 172 -91 209 -965 -965 -965 190 -108 -965 -965 190 -965 -108 -965 9 150 -965 -965 -91 91 -965 67 -965 124 50 -965 -965 91 -965 109 67 -965 124 -965 -965 -965 -965 209 67 91 -108 -965 -965 -108 -965 190 -91 91 -108 9 -965 -965 -108 190 190 -965 -108 -965 -965 191 -965 -965 -91 -108 -108 141 141 -965 -965 67 209 -965 -965 -965 209 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 8 E= 5.8e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.875000 0.125000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.250000 0.750000 0.000000 0.000000 0.125000 0.500000 0.000000 0.375000 0.000000 0.625000 0.375000 0.000000 0.000000 0.500000 0.000000 0.500000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 1.000000 0.375000 0.500000 0.125000 0.000000 0.000000 0.125000 0.000000 0.875000 0.125000 0.500000 0.125000 0.250000 0.000000 0.000000 0.125000 0.875000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.125000 0.125000 0.625000 0.625000 0.000000 0.000000 0.375000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAAACYSYRTMTYTACTWAA MEME-9 regular expression -------------------------------------------------------------------------------- G[TC]GAAA[CA][CT][CG][CT][GA]T[CA]T[CT]TACT[AT]AA -------------------------------------------------------------------------------- Time 3072.70 secs. ******************************************************************************** ******************************************************************************** MOTIF YCATAAAWHWBW MEME-10 width = 12 sites = 74 llr = 682 E-value = 6.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 Description -------------------------------------------------------------------------------- Simplified A 12a:aa8526:3 pos.-specific C 46::::::4142 probability G 1::::::11:2: matrix T 42:a::243335 bits 2.1 **** 1.9 **** 1.7 **** 1.5 ***** Relative 1.3 ***** Entropy 1.0 ***** (13.3 bits) 0.8 ****** 0.6 ******* * * 0.4 ******* *** 0.2 ************ 0.0 ------------ Multilevel TCATAAAACACT consensus CT TTTTA sequence A A GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr9:95721084-95721584 + 39 1.90e-07 TTTAACTGTA TCATAAAACATT TGGAGGACAT chr10:22552798-22553298 + 65 7.34e-07 TAATCCTACC TCATAAAACTCT GGACACCATG chr12:54052005-54052505 - 60 9.96e-07 CTGTAAAACG TCATAAATCAGT CTCGCGGAAT chr1:151494721-151495221 - 83 9.96e-07 AGTCAT TCATAAAAAATT TTTTCTACAG chr10:121831698-12183219 + 48 9.96e-07 TCTATAGTGA CCATAAATTATT CTGAATTGCC chr5:125485095-125485595 + 89 2.13e-06 AGTTGAGTAG TCATAAAATATA chr5:119328610-119329110 - 1 2.13e-06 TGATCCCTCG TAATAAAATACT chr9:85743217-85743717 - 24 2.73e-06 TTACCGCAAA ACATAAATCACT CACTCTTGTG chr15:67720508-67721008 - 30 2.73e-06 AAGCAAAGGC CCATAAAATACA CTAATTACTG chr12:25333744-25334244 + 84 3.40e-06 GCAAGTCAAT CCATAAATTACA CAGGG chr5:59021152-59021652 + 14 3.40e-06 TGGTAAGGTC TCATAAATCACC ATGACTGGGT chr6:2028598-2029098 - 5 4.10e-06 TATTATGAAC ACATAAATCATT TCAT chr18:3409073-3409573 + 20 4.10e-06 acaaaCAAAG CTATAAAATACT GTATCAAGAA chr4:111883532-111884032 - 11 4.88e-06 GTCTTACCAT CTATAAAACATT AGCTCCCTTT chr7:51606670-51607170 + 20 4.88e-06 gactcattcc tcataaaaccct ttatgagtat chr8:37302601-37303101 + 22 5.87e-06 CTGGAACATG CAATAAATCATT AGAATGCCAA chr6:131816139-131816639 + 19 5.87e-06 CCTCCATCAA CCATAAAATACC CCCCAAACAA chr10:63629367-63629867 + 54 8.60e-06 GCCACCTCGG CCATAAAACCCT TTCAAGTCCC chr2:177038714-177039214 + 87 8.60e-06 TATCACTAGA ACATAAATCAGT AA chr1:160260933-160261433 - 63 1.02e-05 ACCACTAAAG TCATAAAATTCC TACCAGTTTC chr4:53943648-53944148 - 69 1.02e-05 CTATCCATCT TCATAAAGCACT CTTTAGAAGG chr8:37637840-37638340 + 41 1.02e-05 AGGCAAGGAC TCATAAATATGT CACAAGTGGA chr1:61091427-61091927 - 37 1.18e-05 TAAAGACTGG TCATAAATTAGC TTTACTGTTA chr1:228861052-228861552 + 35 1.18e-05 GGTTCTGGGT CAATAAATCAGT CAGTAAGCAC chr12:54033423-54033923 + 40 1.36e-05 AAACCTGCGG CCATAAATTTTA CGATCCAGGC chr7:83267079-83267579 - 26 1.36e-05 AGATCCAAAG CTATAAATCACA TAAAATTCAT chr19:13036596-13037096 + 24 1.36e-05 CCGTGCTGGG CTATAAATTTCT GAGCAGTGAC chr1:38785534-38786034 + 40 1.58e-05 aaacttagtg gcataaaacatt cacttattat chr15:66886252-66886752 - 39 1.80e-05 AACATGAGCC TCATAAATGAGT CTGGAAATGT chrX:38061250-38061750 + 22 2.03e-05 ATTTAATAGA CCATAAAATTGA AATTCCCACC chr12:27003698-27004198 + 89 2.03e-05 CAGGCACTGC ACATAAAATTGT chr12:54017272-54017772 - 63 2.29e-05 ATTTTCCTCC CCATAATTAACT ACGCGCCCAC chr1:151972959-151973459 + 54 2.29e-05 TTGCCAAATT ACATAAATTTGT TATTAGACTT chr1:87718336-87718836 + 60 2.60e-05 CACAGTCAAG CTATAAATCTGT CCAAAGGCCA chr7:116810288-116810788 + 60 2.60e-05 AAGGTCACAG TTATAAATCTTA CCACAGGAAG chr17:68381041-68381541 - 85 2.95e-05 AAAG CAATAAATATTT AGCCACAGCA chr19:2529423-2529923 - 42 2.95e-05 CTCATCGAGT CCATAAATGACA CGGAAATGAT chr6:10403513-10404013 + 26 2.95e-05 ttgctgaccc ttataaaatctt atctactaaa chr16:71426541-71427041 + 82 3.32e-05 AGGGCCGCGT AAATAAAATACA TGGTAAG chr5:175378371-175378871 + 72 3.32e-05 tgttttcagc tcataaaacctc ttggaataac chr20:35319258-35319758 + 2 3.32e-05 G TTATAATATATT TGCCATGCAC chr5:37738045-37738545 + 15 3.32e-05 AGGTTTTCCT TCATAATAAACA ATGGGCCCTG chr10:87761828-87762328 - 64 3.32e-05 TGTAACAGAG CCATAATTTACA CAGGTTATTT chr2:19670198-19670698 - 85 3.32e-05 CATG TAATAAAATTCC ATTCTGCCCT chr12:54359135-54359635 + 6 3.32e-05 GCTGA CCATAAATCTGC CTGTAAGAGA chr12:114914164-11491466 - 73 3.69e-05 ACTCACTGGA TCATAAAAGAGA TCAAATAGCT chr5:83265189-83265689 - 15 3.69e-05 AGAGTGAAGC TAATAAAAACCT ATCTCGTTTT chr19:40645858-40646358 + 54 3.69e-05 tttcctccca ttataaataatc ccctcatgga chr20:51934181-51934681 - 19 3.69e-05 TACGATGTGA TAATAAAAACCT TCAGCCTTGT chr19:11344340-11344840 + 29 4.45e-05 GGATAGGAAA CCATAAATTCCC AGTCGGGCTG chr19:8389695-8390195 - 31 4.45e-05 CCCCCCAAGC CCATAAATGACC ATTTCCGGGG chr10:72204302-72204802 + 35 4.45e-05 gtttcagagt ctataaagcact aagaggccat chr15:71747481-71747981 + 5 4.91e-05 cagt caataaaacttc atgagtcaga chr1:233241718-233242218 - 5 4.91e-05 CAGAAAACGG CAATAAATAATC ATGT chr1:81032883-81033383 - 32 4.91e-05 ATGTGAGATC TCATAAAGCTCA CCATAAAAGC chr7:27165467-27165967 + 7 5.41e-05 TTGCAG TCATAATTTTTA TAGCAAAAGC chr5:14439309-14439809 + 80 5.41e-05 TTCCTTTAGG TCATAATTTTTA GTGCTTTTT chr5:99020159-99020659 + 23 5.92e-05 GTGACTCATC ACATAAAACCTA TAATGAGCTT chr7:74079297-74079797 - 56 6.98e-05 CACTCCCGGC CAATAAAAGTTT TTTCTATGAG chr20:50165935-50166435 - 33 6.98e-05 TATCCCTAAG TCATAAAGCAGC AGCTGGGCCC chr17:71163514-71164014 + 18 6.98e-05 GGCTACCAAT GTATAAAACACA TGAACCAAGG chr6:151357951-151358451 + 11 7.55e-05 TTTATGAAGT ACATAATAATCT AATGTAAACT chr14:99821619-99822119 - 22 7.55e-05 CAGAAGTACA TTATAAAACCGA CATATTAGCA chr13:46674946-46675446 + 68 8.15e-05 ATGCCATGTG TTATAATTAACA GGCAGCTGTA chr6:82260178-82260678 - 89 9.31e-05 . AAATAAAACCGT AGTGCATGTC chr16:25049561-25050061 + 33 9.31e-05 gcagcctgtc ctataaaagtgt aacacataca chr1:59077961-59078461 - 6 9.96e-05 CTCTCAGCTC AAATAATTAACT CAATT chr3:42819887-42820387 + 3 1.07e-04 TT GCATAATAAATT GAGGACTCAT chr6:47134639-47135139 + 35 1.07e-04 TCACACCAAG GTATAAATTACC AGTATTGACA chr1:234544537-234545037 - 60 1.07e-04 TGACAGCCGA TCATAATAACCA TGTAACTGAA chr2:24540015-24540515 - 70 1.07e-04 TTTGTTAAGG ATATAATAAATT CCCTATCTGT chr7:70092338-70092838 - 1 1.14e-04 TGTCCAGTCT CAATAAAGCTGT chr15:58332053-58332553 - 8 1.14e-04 ACCCAGGATA GAATAAATCATC AGAGACC chr8:71355250-71355750 - 87 1.14e-04 CA TCATAATGTTTT AATGCTGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:95721084-95721584 1.9e-07 38_[+10]_50 chr10:22552798-22553298 7.3e-07 64_[+10]_24 chr12:54052005-54052505 1e-06 59_[-10]_29 chr1:151494721-151495221 1e-06 82_[-10]_6 chr10:121831698-12183219 1e-06 47_[+10]_41 chr5:125485095-125485595 2.1e-06 88_[+10] chr5:119328610-119329110 2.1e-06 [-10]_88 chr9:85743217-85743717 2.7e-06 23_[-10]_65 chr15:67720508-67721008 2.7e-06 29_[-10]_59 chr12:25333744-25334244 3.4e-06 83_[+10]_5 chr5:59021152-59021652 3.4e-06 13_[+10]_75 chr6:2028598-2029098 4.1e-06 4_[-10]_84 chr18:3409073-3409573 4.1e-06 19_[+10]_69 chr4:111883532-111884032 4.9e-06 10_[-10]_78 chr7:51606670-51607170 4.9e-06 19_[+10]_69 chr8:37302601-37303101 5.9e-06 21_[+10]_67 chr6:131816139-131816639 5.9e-06 18_[+10]_70 chr10:63629367-63629867 8.6e-06 53_[+10]_35 chr2:177038714-177039214 8.6e-06 86_[+10]_2 chr1:160260933-160261433 1e-05 62_[-10]_26 chr4:53943648-53944148 1e-05 68_[-10]_20 chr8:37637840-37638340 1e-05 40_[+10]_48 chr1:61091427-61091927 1.2e-05 36_[-10]_52 chr1:228861052-228861552 1.2e-05 34_[+10]_54 chr12:54033423-54033923 1.4e-05 39_[+10]_49 chr7:83267079-83267579 1.4e-05 25_[-10]_63 chr19:13036596-13037096 1.4e-05 23_[+10]_65 chr1:38785534-38786034 1.6e-05 39_[+10]_49 chr15:66886252-66886752 1.8e-05 38_[-10]_50 chrX:38061250-38061750 2e-05 21_[+10]_67 chr12:27003698-27004198 2e-05 88_[+10] chr12:54017272-54017772 2.3e-05 62_[-10]_26 chr1:151972959-151973459 2.3e-05 53_[+10]_35 chr1:87718336-87718836 2.6e-05 59_[+10]_29 chr7:116810288-116810788 2.6e-05 59_[+10]_29 chr17:68381041-68381541 2.9e-05 84_[-10]_4 chr19:2529423-2529923 2.9e-05 41_[-10]_47 chr6:10403513-10404013 2.9e-05 25_[+10]_63 chr16:71426541-71427041 3.3e-05 81_[+10]_7 chr5:175378371-175378871 3.3e-05 71_[+10]_17 chr20:35319258-35319758 3.3e-05 1_[+10]_87 chr5:37738045-37738545 3.3e-05 14_[+10]_74 chr10:87761828-87762328 3.3e-05 63_[-10]_25 chr2:19670198-19670698 3.3e-05 84_[-10]_4 chr12:54359135-54359635 3.3e-05 5_[+10]_83 chr12:114914164-11491466 3.7e-05 72_[-10]_16 chr5:83265189-83265689 3.7e-05 14_[-10]_74 chr19:40645858-40646358 3.7e-05 53_[+10]_35 chr20:51934181-51934681 3.7e-05 18_[-10]_70 chr19:11344340-11344840 4.5e-05 28_[+10]_60 chr19:8389695-8390195 4.5e-05 30_[-10]_58 chr10:72204302-72204802 4.5e-05 34_[+10]_54 chr15:71747481-71747981 4.9e-05 4_[+10]_84 chr1:233241718-233242218 4.9e-05 4_[-10]_84 chr1:81032883-81033383 4.9e-05 31_[-10]_57 chr7:27165467-27165967 5.4e-05 6_[+10]_82 chr5:14439309-14439809 5.4e-05 79_[+10]_9 chr5:99020159-99020659 5.9e-05 22_[+10]_66 chr7:74079297-74079797 7e-05 55_[-10]_33 chr20:50165935-50166435 7e-05 32_[-10]_56 chr17:71163514-71164014 7e-05 17_[+10]_71 chr6:151357951-151358451 7.6e-05 10_[+10]_78 chr14:99821619-99822119 7.6e-05 21_[-10]_67 chr13:46674946-46675446 8.1e-05 67_[+10]_21 chr6:82260178-82260678 9.3e-05 88_[-10] chr16:25049561-25050061 9.3e-05 32_[+10]_56 chr1:59077961-59078461 0.0001 5_[-10]_83 chr3:42819887-42820387 0.00011 2_[+10]_86 chr6:47134639-47135139 0.00011 34_[+10]_54 chr1:234544537-234545037 0.00011 59_[-10]_29 chr2:24540015-24540515 0.00011 69_[-10]_19 chr7:70092338-70092838 0.00011 [-10]_88 chr15:58332053-58332553 0.00011 7_[-10]_81 chr8:71355250-71355750 0.00011 86_[-10]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCATAAAWHWBW width=12 seqs=74 chr9:95721084-95721584 ( 39) TCATAAAACATT 1 chr10:22552798-22553298 ( 65) TCATAAAACTCT 1 chr12:54052005-54052505 ( 60) TCATAAATCAGT 1 chr1:151494721-151495221 ( 83) TCATAAAAAATT 1 chr10:121831698-12183219 ( 48) CCATAAATTATT 1 chr5:125485095-125485595 ( 89) TCATAAAATATA 1 chr5:119328610-119329110 ( 1) TAATAAAATACT 1 chr9:85743217-85743717 ( 24) ACATAAATCACT 1 chr15:67720508-67721008 ( 30) CCATAAAATACA 1 chr12:25333744-25334244 ( 84) CCATAAATTACA 1 chr5:59021152-59021652 ( 14) TCATAAATCACC 1 chr6:2028598-2029098 ( 5) ACATAAATCATT 1 chr18:3409073-3409573 ( 20) CTATAAAATACT 1 chr4:111883532-111884032 ( 11) CTATAAAACATT 1 chr7:51606670-51607170 ( 20) TCATAAAACCCT 1 chr8:37302601-37303101 ( 22) CAATAAATCATT 1 chr6:131816139-131816639 ( 19) CCATAAAATACC 1 chr10:63629367-63629867 ( 54) CCATAAAACCCT 1 chr2:177038714-177039214 ( 87) ACATAAATCAGT 1 chr1:160260933-160261433 ( 63) TCATAAAATTCC 1 chr4:53943648-53944148 ( 69) TCATAAAGCACT 1 chr8:37637840-37638340 ( 41) TCATAAATATGT 1 chr1:61091427-61091927 ( 37) TCATAAATTAGC 1 chr1:228861052-228861552 ( 35) CAATAAATCAGT 1 chr12:54033423-54033923 ( 40) CCATAAATTTTA 1 chr7:83267079-83267579 ( 26) CTATAAATCACA 1 chr19:13036596-13037096 ( 24) CTATAAATTTCT 1 chr1:38785534-38786034 ( 40) GCATAAAACATT 1 chr15:66886252-66886752 ( 39) TCATAAATGAGT 1 chrX:38061250-38061750 ( 22) CCATAAAATTGA 1 chr12:27003698-27004198 ( 89) ACATAAAATTGT 1 chr12:54017272-54017772 ( 63) CCATAATTAACT 1 chr1:151972959-151973459 ( 54) ACATAAATTTGT 1 chr1:87718336-87718836 ( 60) CTATAAATCTGT 1 chr7:116810288-116810788 ( 60) TTATAAATCTTA 1 chr17:68381041-68381541 ( 85) CAATAAATATTT 1 chr19:2529423-2529923 ( 42) CCATAAATGACA 1 chr6:10403513-10404013 ( 26) TTATAAAATCTT 1 chr16:71426541-71427041 ( 82) AAATAAAATACA 1 chr5:175378371-175378871 ( 72) TCATAAAACCTC 1 chr20:35319258-35319758 ( 2) TTATAATATATT 1 chr5:37738045-37738545 ( 15) TCATAATAAACA 1 chr10:87761828-87762328 ( 64) CCATAATTTACA 1 chr2:19670198-19670698 ( 85) TAATAAAATTCC 1 chr12:54359135-54359635 ( 6) CCATAAATCTGC 1 chr12:114914164-11491466 ( 73) TCATAAAAGAGA 1 chr5:83265189-83265689 ( 15) TAATAAAAACCT 1 chr19:40645858-40646358 ( 54) TTATAAATAATC 1 chr20:51934181-51934681 ( 19) TAATAAAAACCT 1 chr19:11344340-11344840 ( 29) CCATAAATTCCC 1 chr19:8389695-8390195 ( 31) CCATAAATGACC 1 chr10:72204302-72204802 ( 35) CTATAAAGCACT 1 chr15:71747481-71747981 ( 5) CAATAAAACTTC 1 chr1:233241718-233242218 ( 5) CAATAAATAATC 1 chr1:81032883-81033383 ( 32) TCATAAAGCTCA 1 chr7:27165467-27165967 ( 7) TCATAATTTTTA 1 chr5:14439309-14439809 ( 80) TCATAATTTTTA 1 chr5:99020159-99020659 ( 23) ACATAAAACCTA 1 chr7:74079297-74079797 ( 56) CAATAAAAGTTT 1 chr20:50165935-50166435 ( 33) TCATAAAGCAGC 1 chr17:71163514-71164014 ( 18) GTATAAAACACA 1 chr6:151357951-151358451 ( 11) ACATAATAATCT 1 chr14:99821619-99822119 ( 22) TTATAAAACCGA 1 chr13:46674946-46675446 ( 68) TTATAATTAACA 1 chr6:82260178-82260678 ( 89) AAATAAAACCGT 1 chr16:25049561-25050061 ( 33) CTATAAAAGTGT 1 chr1:59077961-59078461 ( 6) AAATAATTAACT 1 chr3:42819887-42820387 ( 3) GCATAATAAATT 1 chr6:47134639-47135139 ( 35) GTATAAATTACC 1 chr1:234544537-234545037 ( 60) TCATAATAACCA 1 chr2:24540015-24540515 ( 70) ATATAATAAATT 1 chr7:70092338-70092838 ( 1) CAATAAAGCTGT 1 chr15:58332053-58332553 ( 8) GAATAAATCATC 1 chr8:71355250-71355750 ( 87) TCATAATGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.6685 E= 6.1e-002 -66 46 -197 84 -21 113 -1285 -12 209 -1285 -1285 -1285 -1285 -1285 -1285 209 209 -1285 -1285 -1285 209 -1285 -1285 -1285 181 -1285 -1285 -42 101 -1285 -171 93 -21 56 -171 47 124 -84 -1285 34 -1285 71 -21 52 20 -39 -1285 117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 74 E= 6.1e-002 0.148649 0.364865 0.067568 0.418919 0.202703 0.581081 0.000000 0.216216 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.824324 0.000000 0.000000 0.175676 0.472973 0.000000 0.081081 0.445946 0.202703 0.391892 0.081081 0.324324 0.554054 0.148649 0.000000 0.297297 0.000000 0.432432 0.229730 0.337838 0.270270 0.202703 0.000000 0.527027 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCATAAAWHWBW MEME-10 regular expression -------------------------------------------------------------------------------- [TC][CTA]ATAAA[AT][CTA][AT][CTG][TAC] -------------------------------------------------------------------------------- Time 3371.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:59077961-59078461 2.00e-01 5_[-10(9.96e-05)]_83 chr6:21749788-21750288 3.39e-01 68_[+6(9.04e-05)]_2 chr6:683900-684400 1.81e-02 65_[-7(1.33e-07)]_13 chr5:124655876-124656376 3.97e-01 100 chr7:51606670-51607170 1.12e-03 8_[-2(5.68e-05)]_4_[+10(4.88e-06)]_\ 10_[-2(5.68e-05)]_52 chr1:228377889-228378389 1.05e-02 19_[-8(2.49e-05)]_[-5(6.34e-05)]_3_\ [-8(2.00e-05)]_32 chr1:220527661-220528161 1.50e-03 2_[+4(3.40e-05)]_46_[+4(1.13e-05)]_\ 20 chr11:120346998-12034749 4.91e-12 39_[+7(8.90e-08)]_1_[+1(1.32e-13)]_\ 1 chr16:67246949-67247449 3.84e-01 100 chr16:75305384-75305884 4.50e-01 100 chr13:46674946-46675446 2.27e-01 67_[+10(8.15e-05)]_5_[+4(7.62e-05)] chr11:114159932-11416043 2.37e-04 14_[-4(1.61e-05)]_70 chr8:37637840-37638340 3.03e-02 40_[+10(1.02e-05)]_48 chr17:71163514-71164014 1.26e-02 17_[+10(6.98e-05)]_9_[-8(2.75e-06)]_\ 50 chr3:58049193-58049693 2.87e-02 6_[-8(4.70e-07)]_69_[+8(1.03e-05)]_\ 1 chr10:21724619-21725119 5.38e-01 100 chr1:215581829-215582329 7.06e-01 100 chr5:59021152-59021652 4.76e-03 13_[+10(3.40e-06)]_75 chr3:127525276-127525776 1.11e-01 39_[+2(5.68e-05)]_54 chr20:5126654-5127154 9.68e-02 32_[+3(2.74e-05)]_53 chr6:152095074-152095574 3.04e-01 68_[+2(5.68e-05)]_25 chr2:177038714-177039214 1.05e-01 60_[+10(1.18e-05)]_14_\ [+10(8.60e-06)]_2 chr20:44728750-44729250 1.35e-03 18_[+4(5.66e-07)]_66 chr19:33274042-33274542 8.30e-10 11_[-2(5.68e-05)]_43_[+1(1.30e-12)]_\ 2 chr1:100351737-100352237 2.86e-08 39_[+1(1.50e-13)]_24 chr15:67720508-67721008 1.13e-02 29_[-10(2.73e-06)]_59 chr4:13640100-13640600 7.79e-07 7_[-10(1.60e-06)]_65_[+2(5.68e-05)]_\ 9 chr12:122399812-12240031 3.11e-05 8_[+8(6.55e-05)]_2_[-9(7.99e-09)]_\ 56 chr2:175805439-175805939 3.58e-01 65_[+2(5.68e-05)]_28 chr10:93702411-93702911 1.11e-01 71_[+5(5.78e-05)]_7 chr13:37046882-37047382 4.38e-01 100 chr12:122860357-12286085 1.16e-01 100 chr10:12720326-12720826 6.42e-01 100 chr8:28445360-28445860 1.92e-03 59_[-6(1.45e-05)]_11 chr6:125946184-125946684 7.47e-01 100 chr20:51934181-51934681 5.40e-02 18_[-10(3.69e-05)]_40_\ [-2(5.68e-05)]_23 chr22:29388135-29388635 2.97e-03 34_[-3(5.49e-07)]_20_[-5(5.78e-05)]_\ 9 chr12:74980528-74981028 4.21e-02 26_[-7(1.04e-06)]_52 chr12:54359135-54359635 1.44e-05 5_[+10(3.32e-05)]_7_[-7(1.17e-06)]_\ 28_[+5(1.05e-07)]_4 chr1:232670256-232670756 6.55e-02 80_[-8(4.70e-07)]_8 chr12:52949686-52950186 7.12e-01 48_[+2(5.68e-05)]_45 chr17:81869321-81869821 1.85e-01 46_[+5(1.76e-05)]_32 chr11:63974466-63974966 1.88e-01 62_[-5(9.88e-05)]_16 chr22:42620763-42621263 1.29e-02 20_[-2(5.68e-05)]_73 chr5:124629088-124629588 1.03e-01 24_[+2(5.68e-05)]_69 chr5:115701931-115702431 4.50e-01 100 chr17:43671063-43671563 3.60e-01 100 chr2:24540015-24540515 7.27e-02 66_[-10(7.55e-05)]_22 chr16:54286347-54286847 6.38e-03 24_[+7(7.75e-08)]_25_[+7(9.29e-05)]_\ 7 chr8:37359513-37360013 2.61e-02 13_[-8(1.23e-05)]_75 chr10:125633567-12563406 7.84e-02 27_[-4(2.75e-06)]_57 chr1:155001608-155002108 1.24e-02 42_[-7(1.99e-05)]_14_[+7(4.43e-06)] chr19:40645858-40646358 5.95e-02 4_[-6(1.22e-05)]_19_[+10(3.69e-05)]_\ 35 chr17:74514524-74515024 1.56e-01 53_[+8(6.32e-07)]_35 chr20:51860243-51860743 2.40e-01 100 chr17:18087611-18088111 3.18e-01 100 chr11:65506799-65507299 2.23e-09 24_[+6(9.33e-16)]_46 chr21:17454366-17454866 3.30e-01 100 chr19:35213864-35214364 5.41e-01 100 chr6:115485400-115485900 7.89e-01 100 chr6:135497467-135497967 9.24e-01 100 chr17:933375-933875 9.40e-03 46_[-2(5.68e-05)]_19_[+7(5.77e-05)]_\ 6 chr10:117148238-11714873 8.96e-02 30_[+4(1.03e-05)]_54 chr16:88264898-88265398 9.15e-02 61_[-5(9.10e-06)]_17 chr9:136848061-136848561 9.21e-02 11_[-7(1.30e-06)]_67 chr12:89769128-89769628 5.41e-01 100 chr16:689436-689936 1.74e-05 19_[+3(7.22e-09)]_66 chr17:76029397-76029897 2.85e-02 53_[+4(4.62e-05)]_31 chr5:16888589-16889089 6.29e-02 73_[+4(4.62e-05)]_11 chr3:17742323-17742823 2.55e-04 13_[+7(2.28e-09)]_12_[+5(4.36e-05)]_\ 31 chr3:194350277-194350777 9.79e-02 18_[-3(4.50e-06)]_67 chr3:72123960-72124460 8.82e-02 67_[-7(1.43e-05)]_11 chr5:93677277-93677777 1.40e-02 15_[-1(8.03e-05)]_13_[+4(3.15e-05)]_\ 19 chr7:2242008-2242508 5.06e-03 11_[+3(7.08e-06)]_74 chr1:155017246-155017746 9.83e-06 18_[+3(3.67e-07)]_26_[+7(2.88e-07)]_\ 19 chr5:168317600-168318100 4.35e-01 100 chr10:63629367-63629867 2.08e-01 53_[+10(8.60e-06)]_35 chr6:43769517-43770017 3.32e-06 1_[+1(1.69e-05)]_8_[+3(8.76e-07)]_\ 16_[+7(2.74e-05)]_1 chr17:17823745-17824245 6.86e-01 100 chr12:25333744-25334244 1.23e-01 83_[+10(3.40e-06)]_5 chr22:31055416-31055916 1.12e-01 79_[+8(2.61e-06)]_9 chr5:181222180-181222680 2.03e-02 14_[+1(5.32e-08)]_49 chr19:18364871-18365371 2.11e-01 77_[+8(2.14e-05)]_11 chr10:63707141-63707641 8.89e-01 100 chr5:81422670-81423170 2.55e-01 1_[+4(9.99e-05)]_83 chr17:2399696-2400196 5.49e-02 47_[-1(6.33e-05)]_16 chr17:43530738-43531238 2.93e-01 100 chr17:82037293-82037793 3.03e-01 [-5(9.10e-06)]_78 chr11:62621876-62622376 4.68e-01 100 chr6:10403513-10404013 4.36e-03 25_[+10(2.95e-05)]_31_\ [+8(2.29e-05)]_20 chr2:19670198-19670698 1.36e-02 48_[+8(6.23e-05)]_24_\ [-10(3.32e-05)]_4 chr15:75625395-75625895 1.14e-01 30_[+5(9.88e-05)]_48 chr4:53943648-53944148 5.13e-02 68_[-10(1.02e-05)]_20 chr17:45131851-45132351 8.30e-03 [-5(9.06e-05)]_38_[-3(9.51e-05)]_25 chr19:13036596-13037096 9.19e-04 3_[+10(9.96e-05)]_8_[+10(1.36e-05)]_\ 5_[-8(2.14e-05)]_48 chr1:223707096-223707596 1.71e-02 63_[-2(5.68e-05)]_20_[-2(5.68e-05)]_\ 3 chr9:136546131-136546631 1.79e-02 46_[-7(2.74e-05)]_6_[+5(1.14e-05)]_\ 4 chr5:179820433-179820933 9.93e-02 100 chr1:93078943-93079443 7.54e-02 58_[-5(2.67e-05)]_20 chr7:98252141-98252641 2.38e-02 10_[-1(3.29e-06)]_18_[+5(8.30e-05)]_\ 13 chr1:37946833-37947333 6.29e-01 100 chr19:45641364-45641864 4.77e-02 25_[+7(1.32e-05)]_53 chr8:144103761-144104261 2.52e-03 33_[+5(5.71e-06)]_25_[+3(2.17e-06)]_\ 5 chr19:18193240-18193740 2.40e-02 63_[-3(4.50e-06)]_22 chr16:3152163-3152663 1.05e-01 65_[-7(2.54e-05)]_13 chr7:149310142-149310642 5.50e-01 100 chr22:18057601-18058101 1.26e-04 28_[-8(9.28e-07)]_36_[-2(5.68e-05)]_\ 17 chr11:128061340-12806184 3.70e-02 19_[-7(1.45e-06)]_59 chr17:48492598-48493098 7.97e-01 100 chr3:12629583-12630083 4.47e-03 [-4(5.66e-07)]_84 chr10:22229177-22229677 1.99e-01 100 chr6:52994917-52995417 6.58e-03 31_[-7(1.79e-06)]_22_[-7(4.87e-06)]_\ 3 chr12:65606302-65606802 8.21e-01 100 chr1:21345612-21346112 5.99e-07 58_[+1(2.48e-10)]_5 chr15:77633354-77633854 7.23e-02 69_[+7(1.43e-05)]_9 chr1:46132414-46132914 9.58e-03 66_[-5(3.59e-05)]_12 chr4:139555153-139555653 1.32e-03 7_[+5(2.95e-05)]_16_[-7(1.84e-05)]_\ 33 chr9:137046483-137046983 1.27e-02 37_[+5(3.26e-05)]_41 chr12:52903858-52904358 2.78e-04 26_[+6(3.97e-06)]_24_[+4(3.70e-07)]_\ 4 chr19:39031583-39032083 7.94e-02 6_[-5(3.09e-06)]_72 chr3:4741539-4742039 7.25e-01 100 chr12:95073279-95073779 5.01e-05 46_[-4(8.56e-06)]_6_[+3(1.06e-06)]_\ 17 chr8:23246429-23246929 2.82e-02 4_[+5(2.67e-05)]_74 chr14:99821619-99822119 2.43e-01 21_[-10(7.55e-05)]_67 chr6:26312789-26313289 5.70e-01 100 chr7:116810288-116810788 8.46e-03 24_[+4(8.74e-05)]_5_[+8(7.12e-05)]_\ 2_[+10(2.60e-05)]_29 chr5:119328610-119329110 8.82e-02 [-10(2.13e-06)]_88 chr4:173252263-173252763 4.07e-01 56_[-2(5.68e-05)]_37 chr17:74981822-74982322 4.33e-02 20_[-8(4.76e-06)]_68 chr5:83265189-83265689 2.36e-05 14_[-10(3.69e-05)]_[+9(3.90e-07)]_7_\ [+6(6.25e-05)]_15 chr17:78935931-78936431 5.03e-02 50_[-2(5.68e-05)]_43 chr10:132700536-13270103 7.66e-01 100 chr8:71355250-71355750 4.04e-01 100 chr9:86282637-86283137 7.76e-02 24_[+3(6.22e-05)]_61 chr10:87761828-87762328 1.59e-01 63_[-10(3.32e-05)]_25 chr7:100335966-100336466 7.40e-01 100 chr10:110918585-11091908 3.27e-02 13_[-5(1.27e-05)]_65 chr20:63968840-63969340 1.57e-05 6_[+3(2.31e-09)]_79 chr17:82494359-82494859 4.64e-01 100 chr10:23420943-23421443 3.87e-01 58_[+4(2.68e-05)]_26 chr17:76737579-76738079 3.40e-01 100 chr17:17913910-17914410 1.17e-05 19_[+2(5.68e-05)]_8_[+5(4.48e-06)]_\ 15_[-7(7.46e-07)]_7 chr5:170861410-170861910 1.12e-04 7_[+3(2.14e-07)]_20_[+2(5.68e-05)]_\ 32_[+3(6.57e-05)]_4 chr2:236078220-236078720 7.95e-03 57_[+2(5.68e-05)]_36 chr17:28726429-28726929 2.98e-01 20_[+5(9.88e-05)]_58 chr7:140396279-140396779 5.21e-01 100 chr5:143245928-143246428 1.09e-01 34_[-2(5.68e-05)]_59 chr6:13006554-13007054 4.59e-01 100 chr6:41767104-41767604 1.17e-01 37_[-8(2.14e-05)]_51 chr1:81126873-81127373 2.68e-02 100 chr3:122824907-122825407 5.72e-01 100 chr1:151972959-151973459 4.03e-02 [-2(5.68e-05)]_46_[+10(2.29e-05)]_\ 35 chr1:20507791-20508291 1.88e-01 15_[-5(1.96e-05)]_63 chr12:54017272-54017772 1.90e-04 37_[+5(4.45e-07)]_3_[-10(2.29e-05)]_\ 2_[-7(1.01e-05)]_2 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chr16:71426541-71427041 1.41e-02 81_[+10(3.32e-05)]_7 chr10:75379136-75379636 2.31e-01 50_[+8(5.39e-05)]_38 chrX:48597665-48598165 8.58e-01 100 chr10:50463964-50464464 2.30e-02 18_[+4(3.70e-07)]_26_[+8(8.02e-05)]_\ 28 chr6:52243294-52243794 6.89e-04 69_[+9(3.34e-09)]_9 chr1:234723899-234724399 2.85e-03 6_[-7(1.33e-07)]_8_[-7(1.97e-07)]_1_\ [-7(2.54e-07)]_19 chr1:150876709-150877209 6.54e-03 12_[+3(6.93e-05)]_5_[+8(5.68e-05)]_\ 56 chr9:18976634-18977134 7.35e-02 83_[+4(3.43e-06)]_1 chr12:114914164-11491466 2.10e-04 27_[-7(1.84e-05)]_23_\ [-10(3.69e-05)]_5_[+2(5.68e-05)]_4 chr5:93582547-93583047 9.66e-08 29_[+1(3.07e-12)]_34 chr4:140756863-140757363 3.20e-04 9_[-3(1.06e-06)]_39_[-8(2.00e-05)]_\ 25 chr1:16727274-16727774 1.12e-01 100 chr15:74546040-74546540 1.02e-01 53_[+2(5.68e-05)]_40 chr1:86774478-86774978 4.80e-01 100 chr15:71115101-71115601 1.16e-02 30_[+3(8.21e-06)]_22_[+5(9.10e-06)]_\ 11 chr1:16534892-16535392 3.92e-01 100 chr3:194134809-194135309 1.05e-09 [-5(6.43e-06)]_9_[-1(6.24e-12)]_3_\ [-5(7.23e-06)]_7 chr5:17305893-17306393 3.96e-02 27_[+8(3.68e-05)]_12_[+4(2.27e-05)]_\ 33 chr19:39125802-39126302 9.29e-03 5_[+3(2.91e-08)]_80 chr17:78558322-78558822 5.91e-02 12_[-8(1.28e-06)]_10_[-8(7.61e-06)]_\ 16_[-8(6.06e-06)]_8_[+8(5.17e-08)]_6 chr20:48921351-48921851 8.59e-05 11_[+7(1.02e-07)]_10_[-5(3.09e-06)]_\ 35 chr1:61057583-61058083 2.48e-18 8_[-9(9.14e-14)]_4_[+1(4.25e-15)]_\ 29 chr1:148264558-148265058 1.98e-01 100 chr5:124740978-124741478 4.05e-01 100 chr19:6737913-6738413 4.18e-03 32_[-3(4.00e-07)]_53 chr5:1801205-1801705 2.08e-01 49_[+5(5.27e-05)]_29 chr6:24774967-24775467 2.95e-01 100 chr1:156660096-156660596 5.96e-05 22_[+2(5.68e-05)]_13_[+8(4.70e-07)]_\ 46 chr1:35769976-35770476 1.50e-01 29_[-3(1.17e-05)]_56 chr15:70494069-70494569 6.70e-03 80_[+8(2.92e-07)]_8 chr19:36139805-36140305 3.20e-02 8_[+5(2.17e-05)]_29_[+2(5.68e-05)]_\ 1_[-5(2.17e-05)]_11 chr12:31749162-31749662 1.62e-01 4_[+2(5.68e-05)]_89 chr17:82065712-82066212 5.22e-05 2_[+3(9.69e-08)]_1_[+8(2.75e-06)]_\ 70 chr10:22552798-22553298 3.99e-03 29_[-8(2.86e-05)]_23_\ [+10(7.34e-07)]_24 chr16:30698965-30699465 6.01e-02 54_[+1(4.46e-06)]_9 chr22:50705019-50705519 5.47e-03 84_[-3(2.91e-08)]_1 chr6:2028598-2029098 9.84e-02 4_[-10(4.10e-06)]_84 chr5:149551520-149552020 3.15e-01 100 chr22:46762640-46763140 1.40e-05 41_[+3(1.22e-09)]_19_[+5(1.76e-05)]_\ 3 chr7:73522253-73522753 4.09e-06 2_[+3(3.27e-07)]_51_[+5(1.61e-06)]_\ 10 chr5:14156521-14157021 6.78e-03 87_[+8(1.59e-05)]_1 chr5:352420-352920 8.82e-01 100 chr22:20117206-20117706 8.96e-05 82_[+3(2.68e-07)]_3 chr19:40750062-40750562 1.41e-01 25_[+2(5.68e-05)]_68 chr6:27602218-27602718 3.77e-18 19_[+1(8.82e-14)]_7_[+6(1.49e-16)]_\ 7 chr10:21525609-21526109 7.06e-01 100 chr17:7836626-7837126 2.21e-04 1_[+3(3.67e-07)]_16_[+8(1.68e-07)]_\ 56 chr19:43950925-43951425 7.44e-01 100 chr2:27890139-27890639 9.00e-03 37_[-3(5.49e-07)]_48 chr12:123383425-12338392 3.71e-01 100 chr6:27671963-27672463 9.26e-15 11_[-9(9.14e-14)]_4_[+1(3.32e-11)]_\ 26 chr1:27348762-27349262 1.56e-04 36_[-3(1.08e-08)]_3_[-3(1.10e-07)]_\ 31 chr14:20657035-20657535 1.06e-01 45_[-7(4.87e-06)]_33 chr6:82260178-82260678 3.11e-01 88_[-10(9.31e-05)] chr2:218568521-218569021 1.90e-06 54_[-7(2.24e-07)]_4_[+3(2.06e-08)]_\ 5 chr12:51172719-51173219 1.25e-01 65_[-5(8.12e-06)]_13 chr11:65551585-65552085 2.22e-03 29_[+3(4.52e-07)]_5_[+3(5.65e-06)]_\ 36 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************