Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TCGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 ACCATATGTT
M0178_1.02 10 AACAGCTGTT
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGG
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTG
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GTTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 AATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCGGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AATAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATTACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATT
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CCAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCTAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 ACCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 GTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTCTT
M1601_1.02 9 ATTGTTCTC
M1605_1.02 10 ATTCATCTTT
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACACTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATGATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATTTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCT
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAAA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCCA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 GTGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCATC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCGGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGACTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGCGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCACCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGT
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTAGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 CTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAA
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CACAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACAGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 TTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAT
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGCCCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATCCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 GGTTGGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGTCACGTGCAGAGGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTGTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCCC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTT
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GATAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAGGGCGCGAAAC
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAACG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 GACCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATG
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTATT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 CTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTC
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ACTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATCATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 CCATTAAACT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CGTAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGAGTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TCTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTTTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAAGTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAA
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCCAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAGA
M6459_1.02 14 AACCACAAACCCCA
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 CCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTCTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCCCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAG
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 CCCCAGGTGG
M6529_1.02 7 TCTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAGTCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.235 C 0.265 G 0.265 T 0.235


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M4567_1.02 FOXA2 chr19 - 32373988 32374002 7.14e-08 0.031 ACTATGTAAACAGAG
M4567_1.02 FOXA2 chr10 + 121831977 121831991 1.07e-07 0.031 CCTAAGTAAACAGAA
M4567_1.02 FOXA2 chr6 - 154852809 154852823 1.77e-07 0.0342 GAAAAGTAAACAGAG
M4567_1.02 FOXA2 chr2 + 55843347 55843361 2.49e-07 0.036 GAAAAGTAAACATTG
M4567_1.02 FOXA2 chr5 + 83265368 83265382 4.28e-07 0.041 CAAAAGTAAACATGG
M4567_1.02 FOXA2 chr12 + 122368644 122368658 4.28e-07 0.041 AAAAAGTAAACATGG
M4567_1.02 FOXA2 chr10 + 12720586 12720600 4.96e-07 0.041 gctaagcaaacagag
M4567_1.02 FOXA2 chr3 + 61821876 61821890 5.77e-07 0.0418 gatgagtaaacagag
M4567_1.02 FOXA2 chr7 + 74994056 74994070 6.67e-07 0.0429 CCAGAGTAAACAGAT
M4567_1.02 FOXA2 chr21 - 33971705 33971719 9.19e-07 0.0498 AATGAGTAAACAGAG
M4567_1.02 FOXA2 chr19 + 11344487 11344501 9.69e-07 0.0498 CCAGAGTAAATAGAG
M4567_1.02 FOXA2 chr5 - 92552531 92552545 1.06e-06 0.0498 ACTAAGTAAACAGCC
M4567_1.02 FOXA2 chr8 - 71355473 71355487 1.19e-06 0.0498 CCAGAGTAAACACAT
M4567_1.02 FOXA2 chr21 + 17501625 17501639 1.28e-06 0.0498 GCTATGCAAACATTG
M4567_1.02 FOXA2 chr9 + 125887273 125887287 1.29e-06 0.0498 GCTAAGCAAACAGAA
M4567_1.02 FOXA2 chr8 - 125430238 125430252 1.44e-06 0.0522 GCTGTGTAAACAGTT
M4567_1.02 FOXA2 chr16 - 4944789 4944803 1.7e-06 0.0538 GAAAAGTAAACACAT
M4567_1.02 FOXA2 chr8 + 37302907 37302921 1.82e-06 0.0538 ACAAAGCAAACAGAA
M4567_1.02 FOXA2 chr21 + 17501572 17501586 1.86e-06 0.0538 ACTATGCAAACATTG
M4567_1.02 FOXA2 chr5 + 88516562 88516576 1.86e-06 0.0538 ACAGAGTAAACACTT
M4567_1.02 FOXA2 chr5 - 83265290 83265304 2.64e-06 0.0708 CCAGAGTAAATATAT
M4567_1.02 FOXA2 chr6 - 75524432 75524446 2.69e-06 0.0708 GAAGAGTAAACAGAC
M4567_1.02 FOXA2 chr6 + 684014 684028 2.82e-06 0.071 TTAAAGTAAACAGTG
M4567_1.02 FOXA2 chr1 + 229221643 229221657 3.03e-06 0.073 GGAAAGTAAACACTG
M4567_1.02 FOXA2 chr5 + 59021315 59021329 3.56e-06 0.0805 CTAAAGTAAACAAAC
M4567_1.02 FOXA2 chr5 - 81422898 81422912 3.71e-06 0.0805 ATTGAGTAAACATAT
M4567_1.02 FOXA2 chr5 - 96745971 96745985 3.75e-06 0.0805 GAAAAGTAAATAAAA
M4567_1.02 FOXA2 chr5 - 136730071 136730085 4.21e-06 0.087 ATAAAGTAAACAATT
M4567_1.02 FOXA2 chr3 + 181329152 181329166 4.72e-06 0.0942 CTTGTGTAAACAAGG
M4567_1.02 FOXA2 chr8 - 71355557 71355571 4.91e-06 0.0947 ACAAAGCAAACAAGT
M4567_1.02 FOXA2 chr4 + 119730343 119730357 5.26e-06 0.0957 CAAAAGCAAACATAA
M4567_1.02 FOXA2 chr8 + 37359672 37359686 5.29e-06 0.0957 ACTCAGTAAACAGTA
M4567_1.02 FOXA2 chr5 + 115702111 115702125 5.65e-06 0.0991 GAAATGTAAATATTA
M4567_1.02 FOXA2 chr5 - 83265423 83265437 6e-06 0.102 GTTAGGTAAACATAG
M4567_1.02 FOXA2 chr5 - 124661747 124661761 6.23e-06 0.103 TCTGTGTAAACACAC
M4567_1.02 FOXA2 chr11 - 65551716 65551730 7.81e-06 0.124 ACTATGCAAACACAC
M4567_1.02 FOXA2 chr12 + 31749526 31749540 7.91e-06 0.124 gaaaagcaaacaaga
M4567_1.02 FOXA2 chr22 - 31055742 31055756 8.48e-06 0.128 GCAGTGCAAACACAT
M4567_1.02 FOXA2 chr15 - 66886693 66886707 8.65e-06 0.128 GGAATGTAAACAAAC
M4567_1.02 FOXA2 chr17 - 81394117 81394131 9.25e-06 0.131 CGAGTGTAAACAAGG
M4567_1.02 FOXA2 chr1 + 233636085 233636099 9.41e-06 0.131 gctgaataaacagtg
M4567_1.02 FOXA2 chr5 + 93582830 93582844 9.69e-06 0.131 TCAGAGTAAATAGCA
M4567_1.02 FOXA2 chr17 - 48492805 48492819 1.01e-05 0.131 CCTAAATAAACACTG
M4567_1.02 FOXA2 chr12 - 27004026 27004040 1.03e-05 0.131 CTTAAGCAAACAAAA
M4567_1.02 FOXA2 chr15 + 90155283 90155297 1.09e-05 0.131 CCACTGTAAACAAAC
M4567_1.02 FOXA2 chr9 + 137046617 137046631 1.11e-05 0.131 GAAAAGCAAATACAG
M4567_1.02 FOXA2 chr6 - 154852972 154852986 1.11e-05 0.131 AAAAAGCAAACAGGT
M4567_1.02 FOXA2 chr6 + 27020278 27020292 1.12e-05 0.131 CCAGAGCAAACACGC
M4567_1.02 FOXA2 chr6 + 52243468 52243482 1.13e-05 0.131 CCAAAGTCAACACTG
M4567_1.02 FOXA2 chr3 + 17730655 17730669 1.16e-05 0.131 catgagtaaataaat
M4567_1.02 FOXA2 chr12 - 122400662 122400676 1.17e-05 0.131 GATATGCAAACAAGA
M4567_1.02 FOXA2 chr12 - 806599 806613 1.19e-05 0.131 TCAAAATAAACATTG
M4567_1.02 FOXA2 chr16 + 3152307 3152321 1.2e-05 0.131 GGAAAGTAAACACCC
M4567_1.02 FOXA2 chr3 + 42820221 42820235 1.29e-05 0.138 GTTATGCAAACAGAT
M4567_1.02 FOXA2 chr7 + 33669448 33669462 1.37e-05 0.143 CTTAAGTAAATATCC
M4567_1.02 FOXA2 chr10 - 44753180 44753194 1.38e-05 0.143 GTAAAGCAAATAGTG
M4567_1.02 FOXA2 chr5 - 32490175 32490189 1.41e-05 0.143 TGAAAGTAAACACAT
M4567_1.02 FOXA2 chr10 + 72800648 72800662 1.45e-05 0.143 CAAAAGCAAACATCC
M4567_1.02 FOXA2 chr19 + 40921183 40921197 1.46e-05 0.143 TCAGGGTAAACACTG
M4567_1.02 FOXA2 chr20 + 50166106 50166120 1.5e-05 0.145 CCTGGGTAAATAGGG
M4567_1.02 FOXA2 chr5 + 74632211 74632225 1.55e-05 0.145 TCTGTGCAAATATAG
M4567_1.02 FOXA2 chr15 + 40092425 40092439 1.57e-05 0.145 CCAGTGCAAacacgc
M4567_1.02 FOXA2 chr6 - 138088513 138088527 1.59e-05 0.145 CAAAAATAAACAAAG
M4567_1.02 FOXA2 chr9 + 95721407 95721421 1.6e-05 0.145 CCAAAGTCAATAGAG
M4567_1.02 FOXA2 chr14 + 68140463 68140477 1.74e-05 0.15 CTACAGTAAACAGTA
M4567_1.02 FOXA2 chr1 - 28885291 28885305 1.75e-05 0.15 CCTCTGCAAACAGTG
M4567_1.02 FOXA2 chr21 + 26796154 26796168 1.77e-05 0.15 CATAAATAAACAGTG
M4567_1.02 FOXA2 chr1 + 220527994 220528008 1.81e-05 0.15 CAAAAATAAACACAG
M4567_1.02 FOXA2 chr10 + 60951424 60951438 1.82e-05 0.15 GCTCTGTAAATATTT
M4567_1.02 FOXA2 chr12 + 101460055 101460069 1.82e-05 0.15 cctttgtaaacaaac
M4567_1.02 FOXA2 chr17 + 71438988 71439002 1.87e-05 0.15 GAAAAATAAACACTG
M4567_1.02 FOXA2 chr6 + 75524776 75524790 1.94e-05 0.15 CCAAAACAAACAGAG
M4567_1.02 FOXA2 chr12 + 122368917 122368931 1.94e-05 0.15 ataaaataaaCATGG
M4567_1.02 FOXA2 chr22 - 24727274 24727288 1.95e-05 0.15 ATAAAGTCAACAGAG
M4567_1.02 FOXA2 chr1 + 12478177 12478191 1.97e-05 0.15 CATGAGCAAACAGTC
M4567_1.02 FOXA2 chr16 - 29811664 29811678 1.97e-05 0.15 CCCGTGTAAACACAG
M4567_1.02 FOXA2 chr7 + 140924497 140924511 2.03e-05 0.15 CCAAAATAAACACCA
M4567_1.02 FOXA2 chr4 - 111883672 111883686 2.06e-05 0.15 TGTAAGTAAACACTC
M4567_1.02 FOXA2 chr5 + 124741294 124741308 2.06e-05 0.15 ACAGAATAAACAGAC
M4567_1.02 FOXA2 chr19 - 40646040 40646054 2.07e-05 0.15 ATAGTGCAAACATTA
M4567_1.02 FOXA2 chr18 + 3409277 3409291 2.23e-05 0.159 acaaaacaaaCAAAG
M4567_1.02 FOXA2 chr5 - 17306059 17306073 2.25e-05 0.159 CCAAAGTCAACACCA
M4567_1.02 FOXA2 chr1 - 228903191 228903205 2.37e-05 0.166 CAAATATAAACAGTG
M4567_1.02 FOXA2 chr16 - 25049868 25049882 2.41e-05 0.166 GCATAGTAAATACAT
M4567_1.02 FOXA2 chr3 - 12629783 12629797 2.5e-05 0.17 GAAAAATAAACAAAT
M4567_1.02 FOXA2 chr1 - 229221375 229221389 2.58e-05 0.173 TCAAGGTAAATAGAT
M4567_1.02 FOXA2 chr5 + 59021262 59021276 2.66e-05 0.174 AGAGTGTAAATAAAA
M4567_1.02 FOXA2 chr3 + 42819995 42820009 2.68e-05 0.174 GCACTGCAAACAGGT
M4567_1.02 FOXA2 chr10 - 21725036 21725050 2.71e-05 0.174 AGAAAGCAAACAGGC
M4567_1.02 FOXA2 chr12 - 114914367 114914381 2.71e-05 0.174 GGTTTGTAAACAGAG
M4567_1.02 FOXA2 chr7 + 83267395 83267409 2.78e-05 0.175 TCTTTGTAAATAGAG
M4567_1.02 FOXA2 chr19 + 32373699 32373713 2.81e-05 0.175 gcagtgtcaacattc
M4567_1.02 FOXA2 chr6 + 154852653 154852667 2.92e-05 0.175 tctgggtaaataatg
M4567_1.02 FOXA2 chr21 + 34846058 34846072 2.94e-05 0.175 ATTAAGTCAACAGAA
M4567_1.02 FOXA2 chr19 - 40645957 40645971 2.94e-05 0.175 GCTGTATAAACAATT
M4567_1.02 FOXA2 chr6 + 131816380 131816394 2.99e-05 0.175 AAAAAATAAACAAGA
M4567_1.02 FOXA2 chr1 + 153566491 153566505 3.02e-05 0.175 GAAAGGCAAACACTG
M4567_1.02 FOXA2 chr7 - 140396718 140396732 3.03e-05 0.175 GTTAAGTCAACAGTA
M4567_1.02 FOXA2 chr10 - 50464113 50464127 3.07e-05 0.175 ACTATGTACACATTG
M4567_1.02 FOXA2 chr6 + 52243411 52243425 3.09e-05 0.175 ACAAAATAAATAAAT
M4567_1.02 FOXA2 chr15 + 65832796 65832810 3.09e-05 0.175 TCTGGGCAAACAAAG
M4567_1.02 FOXA2 chr4 - 71111361 71111375 3.09e-05 0.175 AATAAATAAATAGAG
M4567_1.02 FOXA2 chr19 - 37656080 37656094 3.14e-05 0.175 ACTCAGCAAACACCA
M4567_1.02 FOXA2 chr9 + 95721279 95721293 3.14e-05 0.175 ACTAAATAAATAAAT
M4567_1.02 FOXA2 chr7 + 83267453 83267467 3.26e-05 0.18 CATATATAAACAAAA
M4567_1.02 FOXA2 chr8 + 37637923 37637937 3.31e-05 0.181 TTAGTGCAAACACTG
M4567_1.02 FOXA2 chr19 + 35889361 35889375 3.37e-05 0.183 aataaataaacaaac
M4567_1.02 FOXA2 chr8 - 16825992 16826006 3.44e-05 0.184 GGAAAGCAAATAGAT
M4567_1.02 FOXA2 chr10 + 15796493 15796507 3.63e-05 0.192 acaaaacaaacacaa
M4567_1.02 FOXA2 chr1 + 224317574 224317588 3.67e-05 0.192 GTTAGGTAAATATCA
M4567_1.02 FOXA2 chr5 - 10601540 10601554 3.76e-05 0.192 GAGAAGTAAACAATG
M4567_1.02 FOXA2 chr19 - 40646051 40646065 3.78e-05 0.192 TTTGAATAAACATAG
M4567_1.02 FOXA2 chr1 - 183060609 183060623 3.78e-05 0.192 GACATGTAAACAAAT
M4567_1.02 FOXA2 chr4 - 110904768 110904782 3.8e-05 0.192 CCATTGTAAATAAAC
M4567_1.02 FOXA2 chr1 + 16164366 16164380 3.83e-05 0.192 aatgaGCAAATAAAC
M4567_1.02 FOXA2 chr9 + 125887192 125887206 3.85e-05 0.192 AATATATAAACATTT
M4567_1.02 FOXA2 chr19 + 40832067 40832081 3.92e-05 0.194 GAAGAGTCAACAAAT
M4567_1.02 FOXA2 chr5 - 176537929 176537943 3.96e-05 0.194 GTAGTATAAACAAGG
M4567_1.02 FOXA2 chr5 + 136729963 136729977 4.04e-05 0.196 tcaaaataaataaaa
M4567_1.02 FOXA2 chr1 - 207321373 207321387 4.06e-05 0.196 GCTACGTAAACACAA
M4567_1.02 FOXA2 chr6 - 47134884 47134898 4.14e-05 0.197 GCTGTGTCAATACTG
M4567_1.02 FOXA2 chr6 + 168024273 168024287 4.16e-05 0.197 TTTATGCAAACACTT
M4567_1.02 FOXA2 chr10 - 68153820 68153834 4.24e-05 0.198 AACAAGTAAATAGGG
M4567_1.02 FOXA2 chr10 - 72800538 72800552 4.24e-05 0.198 ATTCAGTAAATAAAT
M4567_1.02 FOXA2 chr1 + 233242062 233242076 4.29e-05 0.198 ATAATGTCAACAAAA
M4567_1.02 FOXA2 chr10 - 68153786 68153800 4.31e-05 0.198 CATATGCAAATAATC
M4567_1.02 FOXA2 chr12 + 51024990 51025004 4.39e-05 0.2 AAAAAATAAACAGCC
M4567_1.02 FOXA2 chr15 - 58332178 58332192 4.47e-05 0.202 GGAATGCAAATAGGA
M4567_1.02 FOXA2 chr17 + 71163546 71163560 4.55e-05 0.204 CCAAAGTAAACTGAA
M4567_1.02 FOXA2 chr5 + 16888868 16888882 4.74e-05 0.21 ATAATATAAACAATA
M4567_1.02 FOXA2 chr6 + 11270478 11270492 4.89e-05 0.21 CTAAAATAAACAAGC
M4567_1.02 FOXA2 chr19 + 35889353 35889367 4.89e-05 0.21 tcaaaataaataaat
M4567_1.02 FOXA2 chr20 - 53609955 53609969 4.89e-05 0.21 TCAAAATAAATAAAT
M4567_1.02 FOXA2 chr4 - 71111365 71111379 4.95e-05 0.21 TCTAAATAAATAAAT
M4567_1.02 FOXA2 chr1 - 85298087 85298101 4.95e-05 0.21 ATTAAGTCAACACAC
M4567_1.02 FOXA2 chr19 + 11344346 11344360 4.98e-05 0.21 AATAAATAAATAAAA
M4567_1.02 FOXA2 chr22 - 40711685 40711699 4.98e-05 0.21 TCTCTGTAAATACTT
M4567_1.02 FOXA2 chrX - 38061413 38061427 5.11e-05 0.213 TCACAATAAACAAAG
M4567_1.02 FOXA2 chr6 + 21748600 21748614 5.14e-05 0.213 GATCTGTAAATACTT
M4567_1.02 FOXA2 chr5 - 74632352 74632366 5.16e-05 0.213 CTTGAATAAACAAAT
M4567_1.02 FOXA2 chrX - 38061343 38061357 5.46e-05 0.223 GAATAGCAAACAAGA
M4567_1.02 FOXA2 chr5 - 99900562 99900576 5.48e-05 0.223 GTTCTGTAAATATCT
M4567_1.02 FOXA2 chr9 + 86741819 86741833 5.65e-05 0.225 GCTGTGTCAATATTC
M4567_1.02 FOXA2 chr8 + 123157208 123157222 5.73e-05 0.225 GGACAGCAAACAAAA
M4567_1.02 FOXA2 chr1 + 198763325 198763339 5.75e-05 0.225 TAAAAATAAACACAC
M4567_1.02 FOXA2 chr15 + 72107573 72107587 5.8e-05 0.225 attaaataaatatat
M4567_1.02 FOXA2 chr5 + 124661546 124661560 5.8e-05 0.225 TTTCTGTAAACAAGC
M4567_1.02 FOXA2 chr19 + 4575755 4575769 5.85e-05 0.225 CAACAGCAAACACtt
M4567_1.02 FOXA2 chr5 - 119328885 119328899 5.88e-05 0.225 TGAATATAAACAGAG
M4567_1.02 FOXA2 chr17 + 933819 933833 5.9e-05 0.225 ATAAAATAAATAAAA
M4567_1.02 FOXA2 chr1 + 67700882 67700896 5.93e-05 0.225 CTTCAGCAAACACAT
M4567_1.02 FOXA2 chr20 + 53610109 53610123 5.98e-05 0.225 cttttgtaaacaact
M4567_1.02 FOXA2 chr3 + 190424900 190424914 5.98e-05 0.225 aataaataaataaaT
M4567_1.02 FOXA2 chr15 - 66886670 66886684 6.03e-05 0.225 CCTCAATAAACATGC
M4567_1.02 FOXA2 chr6 - 168024264 168024278 6.11e-05 0.225 CATAAACAAACATGA
M4567_1.02 FOXA2 chr21 - 17454675 17454689 6.22e-05 0.225 CAAAAACAAACAAAA
M4567_1.02 FOXA2 chr16 - 74578108 74578122 6.22e-05 0.225 CAAAAACAAACAAAA
M4567_1.02 FOXA2 chr8 + 123157171 123157185 6.24e-05 0.225 GACAAGCAAACAACG
M4567_1.02 FOXA2 chr5 + 124735114 124735128 6.3e-05 0.225 AAAAAATAAATATTC
M4567_1.02 FOXA2 chr1 + 237166995 237167009 6.3e-05 0.225 aataaacaaacaaaA
M4567_1.02 FOXA2 chr5 + 126000898 126000912 6.33e-05 0.225 AAAAAATAAATAGGT
M4567_1.02 FOXA2 chr7 - 140924374 140924388 6.33e-05 0.225 CCTACGTAAACACAC
M4567_1.02 FOXA2 chr6 + 52243415 52243429 6.46e-05 0.225 AATAAATAAATAGCA
M4567_1.02 FOXA2 chr14 + 96979592 96979606 6.52e-05 0.225 CTTAAGTCAATAAAA
M4567_1.02 FOXA2 chr19 + 35889357 35889371 6.58e-05 0.225 aataaataaataaac
M4567_1.02 FOXA2 chr10 + 94673659 94673673 6.58e-05 0.225 gcatggtaaatatga
M4567_1.02 FOXA2 chr13 + 37047192 37047206 6.6e-05 0.225 AATCTGTAAATAACT
M4567_1.02 FOXA2 chr3 + 9977247 9977261 6.75e-05 0.225 TGAGAGCAAACACCA
M4567_1.02 FOXA2 chr5 + 81423031 81423045 6.75e-05 0.225 CAAGAATAAATAAAA
M4567_1.02 FOXA2 chr3 + 194350554 194350568 6.8e-05 0.225 agatagtaaatagaa
M4567_1.02 FOXA2 chr1 - 229221323 229221337 6.83e-05 0.225 GCAGTATAAATAGCC
M4567_1.02 FOXA2 chr5 + 124661734 124661748 6.86e-05 0.225 TGTGTGTAAATACGT
M4567_1.02 FOXA2 chr17 + 71163660 71163674 6.89e-05 0.225 ACAAAATCAACATAA
M4567_1.02 FOXA2 chr22 + 20117435 20117449 6.95e-05 0.225 CCTGAGCCAATAAAG
M4567_1.02 FOXA2 chr6 + 115485669 115485683 6.95e-05 0.225 ATAGTATAAACATGC
M4567_1.02 FOXA2 chr11 - 128061500 128061514 6.95e-05 0.225 ACTAGGTCAACAGCA
M4567_1.02 FOXA2 chr10 - 12720560 12720574 7.07e-05 0.225 AATGTGTCAACAGTC
M4567_1.02 FOXA2 chr21 - 26796207 26796221 7.13e-05 0.225 CCTACGTAAATAAGG
M4567_1.02 FOXA2 chr5 - 175378758 175378772 7.13e-05 0.225 CATCTATAAACAGAG
M4567_1.02 FOXA2 chr3 - 194134939 194134953 7.16e-05 0.225 AGAAGGTAAATAGCA
M4567_1.02 FOXA2 chr3 + 190424904 190424918 7.22e-05 0.225 aataaataaaTAACA
M4567_1.02 FOXA2 chr3 - 4986974 4986988 7.25e-05 0.225 GTTGTGTCAACAGGC
M4567_1.02 FOXA2 chr15 - 96053324 96053338 7.25e-05 0.225 TTTGTATAAACAAGG
M4567_1.02 FOXA2 chr12 - 101460101 101460115 7.28e-05 0.225 CAATTGCAAACAGAT
M4567_1.02 FOXA2 chr9 + 125887184 125887198 7.31e-05 0.225 ATAATATAAATATAT
M4567_1.02 FOXA2 chr5 + 81422946 81422960 7.35e-05 0.225 ACATTATAAACAATG
M4567_1.02 FOXA2 chr21 - 34845862 34845876 7.44e-05 0.225 CCAAAGAAAACAAGG
M4567_1.02 FOXA2 chr4 - 119730509 119730523 7.44e-05 0.225 ACTAATTAAACAGAA
M4567_1.02 FOXA2 chr7 + 73309006 73309020 7.5e-05 0.225 gatgggcaaataatg
M4567_1.02 FOXA2 chr12 + 122368623 122368637 7.53e-05 0.225 CCAAGATAAACAGCT
M4567_1.02 FOXA2 chr19 - 13036910 13036924 7.53e-05 0.225 ACTAAGGAAACAATG
M4567_1.02 FOXA2 chr1 - 233636254 233636268 7.53e-05 0.225 CCTAAGAAAACAAGG
M4567_1.02 FOXA2 chr12 + 74980708 74980722 7.56e-05 0.225 CCTGAATCAACAGAG
M4567_1.02 FOXA2 chr5 + 32490205 32490219 7.59e-05 0.225 CTTCTGCAAATATGG
M4567_1.02 FOXA2 chr7 - 149636143 149636157 7.59e-05 0.225 CTGGAGTAAACAGAA
M4567_1.02 FOXA2 chr21 + 17501836 17501850 7.69e-05 0.225 AAAATACAAACATGA
M4567_1.02 FOXA2 chr1 + 89719830 89719844 7.69e-05 0.225 TTTCAGTAAATAGTC
M4567_1.02 FOXA2 chr8 + 109611605 109611619 7.86e-05 0.225 TCAGTATAAATACAA
M4567_1.02 FOXA2 chr17 - 43368401 43368415 7.86e-05 0.225 CTTAAATAAATACAT
M4567_1.02 FOXA2 chr3 + 190424631 190424645 7.93e-05 0.225 AAAAAACAAACATTC
M4567_1.02 FOXA2 chr3 - 42820072 42820086 7.96e-05 0.225 TCAAGATAAACAGAT
M4567_1.02 FOXA2 chr8 + 37360885 37360899 8.12e-05 0.225 ACAGAGTAAACTTTT
M4567_1.02 FOXA2 chr5 + 17326475 17326489 8.16e-05 0.225 caaaaacaaacaaac
M4567_1.02 FOXA2 chr7 + 140396473 140396487 8.16e-05 0.225 TATCTGTAAATATCT
M4567_1.02 FOXA2 chr6 - 16146638 16146652 8.16e-05 0.225 GAAAAGCCAACAGTC
M4567_1.02 FOXA2 chr17 - 28726745 28726759 8.16e-05 0.225 GACAGGTAAACACGG
M4567_1.02 FOXA2 chr19 - 40603898 40603912 8.16e-05 0.225 GCGGGGTAAACAAAG
M4567_1.02 FOXA2 chr3 - 122825061 122825075 8.16e-05 0.225 CAAAAACAAACAAAC
M4567_1.02 FOXA2 chr19 + 35889365 35889379 8.26e-05 0.225 aataaacaaacaaac
M4567_1.02 FOXA2 chr10 - 44752837 44752851 8.26e-05 0.225 GAAATGTCAATAGTC
M4567_1.02 FOXA2 chr6 - 56529736 56529750 8.26e-05 0.225 TCACAATAAACATTT
M4567_1.02 FOXA2 chr5 + 143246375 143246389 8.3e-05 0.225 CCTGAGCCAATAATG
M4567_1.02 FOXA2 chr15 - 65832809 65832823 8.3e-05 0.225 ACTAGGTCAACAGCT
M4567_1.02 FOXA2 chr15 + 71747790 71747804 8.43e-05 0.228 agtatgtcaacagtt
M4567_1.02 FOXA2 chr5 + 136123474 136123488 8.62e-05 0.229 TCAAGATAAACATGT
M4567_1.02 FOXA2 chr20 - 53609951 53609965 8.62e-05 0.229 AATAAATAAATACGC
M4567_1.02 FOXA2 chr1 - 214439744 214439758 8.62e-05 0.229 TGCAAGTAAACAGTA
M4567_1.02 FOXA2 chr3 + 17730659 17730673 8.69e-05 0.229 agtaaataaatatta
M4567_1.02 FOXA2 chr1 + 224317382 224317396 8.69e-05 0.229 gctaaggaaacattt
M4567_1.02 FOXA2 chr21 + 17089442 17089456 8.73e-05 0.229 GTTCTATAAacagtg
M4567_1.02 FOXA2 chr1 - 3900344 3900358 8.73e-05 0.229 AAAGAGCCAACACGG
M4567_1.02 FOXA2 chr5 + 37738259 37738273 8.76e-05 0.229 TCATAATAAACAATG
M4567_1.02 FOXA2 chr6 - 27020518 27020532 8.91e-05 0.23 ACTGTGTACACAATT
M4567_1.02 FOXA2 chr17 + 39770160 39770174 8.94e-05 0.23 GAAAAGCCAACAGCT
M4567_1.02 FOXA2 chr6 + 115485753 115485767 8.94e-05 0.23 AGACAATAAACATAG
M4567_1.02 FOXA2 chr5 - 99900773 99900787 9.06e-05 0.231 GAAGAATAAATAATC
M4567_1.02 FOXA2 chr12 + 122400771 122400785 9.1e-05 0.231 AGTGAGTCAACAGCA
M4567_1.02 FOXA2 chr1 + 233241972 233241986 9.1e-05 0.231 gataattaaacattg
M4567_1.02 FOXA2 chr1 - 21346074 21346088 9.17e-05 0.232 ATATAGCAAACACAC
M4567_1.02 FOXA2 chr15 - 67792478 67792492 9.29e-05 0.234 ATTAGATAAACAATG
M4567_1.02 FOXA2 chr6 - 27684551 27684565 9.45e-05 0.237 GAAATGCCAACAGTT
M4567_1.02 FOXA2 chr10 - 44753070 44753084 9.49e-05 0.237 ATTGTATAAACAACT
M4567_1.02 FOXA2 chr7 + 80877181 80877195 9.53e-05 0.237 TATGAGTACACATTG
M4567_1.02 FOXA2 chr2 + 25078420 25078434 9.69e-05 0.237 AGAAAATAAATACAA
M4567_1.02 FOXA2 chr20 + 35319562 35319576 9.69e-05 0.237 GCAAAGAAAACAAAC
M4567_1.02 FOXA2 chr19 + 1021819 1021833 9.73e-05 0.237 AATGAATAAATAAGT
M4567_1.02 FOXA2 chr13 + 87123957 87123971 9.73e-05 0.237 CTAaaacaaacaaac
M4567_1.02 FOXA2 chr14 + 103520931 103520945 9.73e-05 0.237 GAAAAGAAAACAAAG
M4567_1.02 FOXA2 chr14 + 96980010 96980024 9.77e-05 0.237 TCTAAGTAAAGAGAA
M4567_1.02 FOXA2 chr12 + 52904121 52904135 9.85e-05 0.238 CCTATGTaaaaaaaa

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_9 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif M4567_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_9 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/BCL11A.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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