# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 TTATTTATTTATTTATTTATTTATTTA MEME-1 TTATTTATTTATTTATTTATTTATTTA 6.7e-297 9.0e-300 -688.57 0.0 34 474 321 378 0.07173 3.8e-302 236 1 TTTATTTATTTATTTA MEME-2 TTTATTTATTTATTTA 4.5e-267 6.0e-270 -619.90 0.0 45 485 336 403 0.09278 2.5e-272 242 1 ACAGAGYGAGACTCYRTCTCAA MEME-3 ACAGAGYGAGACTCYRTCTCAA 5.8e-063 7.8e-066 -149.91 0.0 103 479 221 335 0.21503 3.3e-068 239 2 AAATAAAT DREME-1 AAATAAAT 5.8e-248 7.7e-251 -575.90 0.0 57 493 337 390 0.11562 3.1e-253 246 2 GTCTCR DREME-2 GTCTCA 1.9e-019 2.5e-022 -49.73 0.0 89 495 143 342 0.17980 1.0e-024 247 2 ACASAG DREME-3 ACAGAG 2.2e-028 2.9e-031 -70.30 0.0 121 495 200 372 0.24444 1.2e-033 247 2 CCATCTCW DREME-4 CCATCTCA 1.8e-004 2.4e-007 -15.24 0.0 79 493 56 153 0.16024 9.7e-010 246 2 CTGGAGK DREME-7 CTGGAGK 7.3e-032 9.8e-035 -78.31 0.0 150 494 201 306 0.30364 4.0e-037 246 2 CCKCMGC DREME-8 CCKCMGC 2.0e-006 2.7e-009 -19.75 0.0 302 494 260 331 0.61134 1.1e-011 246 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 4.8e-031 6.5e-034 -76.42 0.0 58 490 162 482 0.11837 2.6e-036 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 9.8e-010 1.3e-012 -27.35 0.0 70 492 134 480 0.14228 5.4e-015 245 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 2.2e-011 3.0e-014 -31.15 0.0 160 490 270 543 0.32653 1.2e-016 244 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 5.4e-092 7.3e-095 -216.75 0.0 65 491 278 551 0.13238 3.0e-097 245 3 M0437_1.02 (ZNF32)_(Mus_musculus)_(DBD_0.99) TATRTATRT 9.6e-059 1.3e-061 -140.21 0.0 50 492 185 461 0.10163 5.2e-064 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 2.1e-013 2.9e-016 -35.79 0.0 210 492 352 578 0.42683 1.2e-018 245 3 M0633_1.02 DMRT2 KAATKTATWN 5.6e-098 7.5e-101 -230.54 0.0 59 491 258 496 0.12016 3.1e-103 245 3 M0718_1.02 FOXK1 DNRTMAACAH 4.6e-010 6.2e-013 -28.11 0.0 117 491 218 564 0.23829 2.5e-015 245 3 M0719_1.02 FOXG1 RTAAACAW 5.9e-014 8.0e-017 -37.07 0.0 45 493 114 513 0.09128 3.2e-019 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 1.9e-054 2.5e-057 -130.32 0.0 61 489 219 545 0.12474 1.0e-059 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 9.0e-007 1.2e-009 -20.54 0.0 99 493 180 554 0.20081 4.9e-012 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 6.8e-136 9.1e-139 -317.85 0.0 49 491 288 536 0.09980 3.7e-141 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 4.4e-104 5.9e-107 -244.60 0.0 71 491 302 545 0.14460 2.4e-109 245 3 M0896_1.02 VENTX TTAATTAG 1.2e-016 1.6e-019 -43.30 0.0 53 493 130 496 0.10751 6.4e-022 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 4.3e-003 5.8e-006 -12.05 0.0 115 491 173 505 0.23422 2.4e-008 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 1.9e-011 2.5e-014 -31.31 0.0 53 491 113 465 0.10794 1.0e-016 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 8.3e0000 1.1e-002 -4.49 0.0 411 493 420 468 0.83367 4.6e-005 246 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 1.9e0000 2.5e-003 -5.98 0.0 216 492 42 58 0.43902 1.0e-005 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 4.9e-005 6.5e-008 -16.55 0.0 107 491 168 495 0.21792 2.7e-010 245 3 M1528_1.02 (RFX6)_(Mus_musculus)_(DBD_0.66) NCNTRGYWAC 4.1e-001 5.6e-004 -7.49 0.0 133 491 207 578 0.27088 2.3e-006 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 6.2e-043 8.3e-046 -103.80 0.0 48 490 166 486 0.09796 3.4e-048 244 3 M1583_1.02 (BBX)_(Mus_musculus)_(DBD_0.99) TTCATTGA 2.2e-002 3.0e-005 -10.41 0.0 201 493 236 445 0.40771 1.2e-007 246 3 M1668_1.02 PRKRIR NYCVNVSKRNNN 3.7e-004 4.9e-007 -14.52 0.0 365 489 482 567 0.74642 2.0e-009 244 3 M1882_1.02 IRF1 AAANNGAAAGTGAAASYRRRN 4.1e-002 5.6e-005 -9.80 0.0 94 480 142 485 0.19583 2.3e-007 239 3 M1884_1.02 MEF2A DKCTAAAAATAGMHH 4.0e-006 5.3e-009 -19.05 0.0 72 486 127 476 0.14815 2.2e-011 242 3 M2267_1.02 CDX2 TTTTATKRCHB 2.0e-001 2.7e-004 -8.21 0.0 108 490 147 466 0.22041 1.1e-006 244 3 M2273_1.02 E2F6 RGGCGGGARRV 1.1e-002 1.5e-005 -11.10 0.0 334 490 419 534 0.68163 6.2e-008 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 6.2e-080 8.3e-083 -189.00 0.0 58 486 245 529 0.11934 3.4e-085 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 1.0e-043 1.3e-046 -105.62 0.0 68 488 202 495 0.13934 5.5e-049 243 3 M2385_1.02 FOXP2 RWGTAAACAVR 8.1e-050 1.1e-052 -119.64 0.0 58 490 201 519 0.11837 4.5e-055 244 3 M2387_1.02 SREBF1 RTGGGGTGAB 7.7e-003 1.0e-005 -11.47 0.0 247 491 325 524 0.50305 4.2e-008 245 3 M2388_1.02 SREBF2 RTGGGGTGAY 8.3e-004 1.1e-006 -13.71 0.0 243 491 326 525 0.49491 4.6e-009 245 3 M4452_1.02 BATF TYYYRWWATGASTCA 5.2e-003 7.0e-006 -11.87 0.0 140 486 200 497 0.28807 2.9e-008 242 3 M4467_1.02 MEF2C DDKCYAAAAATAGMH 2.2e-016 3.0e-019 -42.66 0.0 80 486 172 507 0.16461 1.2e-021 242 3 M4471_1.02 PAX5 BCAGYSRAGCGTGAC 5.8e-001 7.9e-004 -7.15 0.0 200 486 275 541 0.41152 3.2e-006 242 3 M4476_1.02 RFX5 TCABYWGTTGCYRGG 5.5e-001 7.4e-004 -7.22 0.0 350 486 446 554 0.72016 3.0e-006 242 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 9.1e-002 1.2e-004 -9.00 0.0 326 486 374 484 0.67078 5.1e-007 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 1.7e-014 2.2e-017 -38.33 0.0 148 484 163 289 0.30579 9.3e-020 241 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 7.3e-002 9.8e-005 -9.23 0.0 333 487 357 452 0.68378 4.0e-007 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 2.9e-070 3.9e-073 -166.72 0.0 64 486 249 549 0.13169 1.6e-075 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 1.2e-002 1.6e-005 -11.02 0.0 288 486 292 405 0.59259 6.7e-008 242 3 M4604_1.02 ZNF263 RRGGAGGASGVVGRGGRGGRG 5.8e-003 7.7e-006 -11.77 0.0 276 480 355 513 0.57500 3.2e-008 239 3 M4619_1.02 FOSL1 BGGTGASTCAT 7.8e0000 1.1e-002 -4.55 0.0 332 490 340 445 0.67755 4.3e-005 244 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 4.7e-003 6.3e-006 -11.97 0.0 324 484 318 400 0.66942 2.6e-008 241 3 M4681_1.02 BACH2 TGCTGAGTCA 5.9e-005 8.0e-008 -16.35 0.0 315 491 332 425 0.64155 3.2e-010 245 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 1.4e-001 1.9e-004 -8.59 0.0 198 486 269 525 0.40741 7.7e-007 242 3 M5287_1.02 ALX4 HTAATYNAATTAN 4.0e-144 5.3e-147 -336.81 0.0 48 488 280 487 0.09836 2.2e-149 243 3 M5291_1.02 ARX YTAATTNRATTAN 7.6e-178 1.0e-180 -414.44 0.0 48 488 304 470 0.09836 4.2e-183 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 5.3e-016 7.2e-019 -41.78 0.0 75 491 167 528 0.15275 2.9e-021 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 1.2e-005 1.6e-008 -17.95 0.0 72 484 108 391 0.14876 6.6e-011 241 3 M5322_1.02 CPEB1 YTTTTATT 1.7e-029 2.3e-032 -72.83 0.0 67 493 179 511 0.13590 9.6e-035 246 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 5.4e-225 7.2e-228 -523.01 0.0 45 483 312 410 0.09317 3.0e-230 241 3 M5348_1.02 DRGX NTAATYHAATTAN 2.5e-100 3.3e-103 -235.97 0.0 48 488 234 476 0.09836 1.4e-105 243 3 M5377_1.02 ELF4 AACCCGGAAGTR 9.1e0000 1.2e-002 -4.40 0.0 389 489 336 385 0.79550 5.1e-005 244 3 M5425_1.02 ETV6 CCGGAASCGGAAGYR 8.4e-005 1.1e-007 -16.00 0.0 324 486 285 349 0.66667 4.6e-010 242 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 8.9e-001 1.2e-003 -6.73 0.0 161 487 176 401 0.33060 4.9e-006 243 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 9.3e-006 1.3e-008 -18.19 0.0 49 487 96 475 0.10062 5.2e-011 243 3 M5446_1.02 FOXD4L2 RTAAACA 1.0e-085 1.4e-088 -202.32 0.0 52 494 246 561 0.10526 5.5e-091 246 3 M5460_1.02 FOXL1 RTAAACA 2.3e-112 3.1e-115 -263.65 0.0 50 494 268 544 0.10121 1.3e-117 246 3 M5544_1.02 HOXC10 DTTTWATKDB 1.9e-026 2.6e-029 -65.81 0.0 67 491 179 533 0.13646 1.1e-031 245 3 M5547_1.02 HOXC11 DGTCRTWAAAH 1.3e0000 1.7e-003 -6.35 0.0 174 490 193 419 0.35510 7.1e-006 244 3 M5555_1.02 HOXD11 RTCGTAAAAH 3.0e-003 4.0e-006 -12.43 0.0 171 491 209 436 0.34827 1.6e-008 245 3 M5584_1.02 ISX YTAATCTAATTAR 3.8e-150 5.0e-153 -350.68 0.0 48 488 274 448 0.09836 2.1e-155 243 3 M5604_1.02 LMX1A YTAATTAA 4.7e-015 6.3e-018 -39.60 0.0 61 493 134 478 0.12373 2.6e-020 246 3 M5605_1.02 LMX1B TTAATTRN 2.1e-016 2.8e-019 -42.71 0.0 67 493 149 493 0.13590 1.1e-021 246 3 M5635_1.02 MNX1 TTTAATTRNH 3.0e-010 4.0e-013 -28.56 0.0 67 491 137 506 0.13646 1.6e-015 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 9.3e-039 1.3e-041 -94.18 0.0 65 483 181 457 0.13458 5.2e-044 241 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 1.8e-166 2.4e-169 -388.27 0.0 59 487 315 466 0.12115 9.8e-172 243 3 M5705_1.02 PAX4 YTAATTAG 1.4e0000 1.8e-003 -6.30 0.0 425 493 438 473 0.86207 7.5e-006 246 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 8.4e-004 1.1e-006 -13.70 0.0 192 484 132 224 0.39669 4.7e-009 241 3 M5714_1.02 PHOX2A TAATYYAATTA 9.4e-073 1.3e-075 -172.46 0.0 46 490 199 475 0.09388 5.2e-078 244 3 M5715_1.02 PHOX2B TAATYYAATTA 2.2e-063 3.0e-066 -150.88 0.0 46 490 189 480 0.09388 1.2e-068 244 3 M5740_1.02 POU4F1 ATGMATAATTAATG 5.7e-173 7.7e-176 -403.22 0.0 47 487 299 472 0.09651 3.2e-178 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 1.7e-166 2.3e-169 -388.29 0.0 53 485 307 474 0.10928 9.7e-172 242 3 M5753_1.02 PROX1 YAAGACGYCTTA 2.5e-008 3.3e-011 -24.12 0.0 143 489 128 248 0.29243 1.4e-013 244 3 M5777_1.02 RFX4 NGTWRCCATGGYWACS 1.6e0000 2.2e-003 -6.13 0.0 341 485 314 393 0.70309 9.0e-006 242 3 M5941_1.02 UNCX NTAATYBAATTAN 1.2e-044 1.7e-047 -107.71 0.0 48 488 170 493 0.09836 6.8e-050 243 3 M5949_1.02 VSX1 YTAATTAN 4.0e0000 5.3e-003 -5.23 0.0 423 493 437 475 0.85801 2.2e-005 246 3 M6114_1.02 FOXA1 WAWGYAAAYA 6.9e-110 9.3e-113 -257.96 0.0 73 491 307 530 0.14868 3.8e-115 245 3 M6141_1.02 ALX1 TAATBYAATTAY 1.2e-023 1.6e-026 -59.42 0.0 51 489 142 499 0.10429 6.4e-029 244 3 M6146_1.02 TFAP2D ACGNGCCBCRGGCK 2.3e0000 3.1e-003 -5.78 0.0 309 487 322 441 0.63450 1.3e-005 243 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 6.1e-174 8.2e-177 -405.45 0.0 49 479 303 465 0.10230 3.4e-179 239 3 M6187_1.02 DDIT3 GGGGATTGCABBB 3.5e-005 4.8e-008 -16.86 0.0 314 488 429 560 0.64344 2.0e-010 243 3 M6221_1.02 ETS2 VMVGGAAGTKS 1.1e-003 1.5e-006 -13.43 0.0 310 490 432 580 0.63265 6.0e-009 244 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 2.5e-147 3.4e-150 -344.18 0.0 62 488 326 532 0.12705 1.4e-152 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 2.1e-055 2.8e-058 -132.53 0.0 64 486 212 489 0.13169 1.1e-060 242 3 M6237_1.02 FOXD3 AAACAAACA 2.6e-112 3.5e-115 -263.54 0.0 48 492 261 535 0.09756 1.4e-117 245 3 M6238_1.02 FOXF1 WAAATAAACAW 3.3e-157 4.4e-160 -366.92 0.0 72 490 349 519 0.14694 1.8e-162 244 3 M6239_1.02 FOXF2 HWADGTAAACA 2.5e-110 3.3e-113 -258.99 0.0 74 490 305 517 0.15102 1.4e-115 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 6.9e-192 9.3e-195 -446.77 0.0 43 491 319 519 0.08758 3.8e-197 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 5.4e-097 7.2e-100 -228.28 0.0 52 488 245 499 0.10656 3.0e-102 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 1.8e-088 2.4e-091 -208.65 0.0 58 488 261 553 0.11885 9.9e-094 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 4.8e-113 6.5e-116 -265.23 0.0 47 485 262 537 0.09691 2.7e-118 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 2.8e-093 3.8e-096 -219.71 0.0 54 488 255 540 0.11066 1.6e-098 243 3 M6247_1.02 FOXO4 MRTAAACAA 3.1e-033 4.1e-036 -81.48 0.0 46 492 159 552 0.09350 1.7e-038 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 4.0e-100 5.4e-103 -235.48 0.0 51 489 244 492 0.10429 2.2e-105 244 3 M6263_1.02 GFI1 RCWSTGATTT 4.1e0000 5.5e-003 -5.20 0.0 389 491 477 554 0.79226 2.3e-005 245 3 M6269_1.02 HBP1 AYYCATTGA 8.9e0000 1.2e-002 -4.43 0.0 62 492 99 529 0.12602 4.9e-005 245 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 6.9e-002 9.2e-005 -9.29 0.0 271 485 225 324 0.55876 3.8e-007 242 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 4.9e-007 6.6e-010 -21.13 0.0 44 486 92 474 0.09053 2.7e-012 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 1.6e-005 2.1e-008 -17.68 0.0 63 487 116 490 0.12936 8.6e-011 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 1.1e-162 1.5e-165 -379.52 0.0 63 487 325 482 0.12936 6.2e-168 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 3.1e-047 4.2e-050 -113.70 0.0 55 489 189 508 0.11247 1.7e-052 244 3 M6292_1.02 HOXA5 CATTAATYAR 1.3e-002 1.7e-005 -10.96 0.0 53 491 92 485 0.10794 7.1e-008 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 1.0e-009 1.4e-012 -27.30 0.0 76 488 111 343 0.15574 5.7e-015 243 3 M6297_1.02 HOXB7 MATYAATCAA 4.9e-122 6.6e-125 -285.94 0.0 55 491 268 472 0.11202 2.7e-127 245 3 M6298_1.02 HOXB8 BMATTAATCAA 3.9e-104 5.3e-107 -244.71 0.0 56 490 250 464 0.11429 2.2e-109 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 1.3e-195 1.7e-198 -455.37 0.0 54 486 319 439 0.11111 7.1e-201 242 3 M6301_1.02 HOXD10 AATTAAARCA 8.6e-019 1.2e-021 -48.21 0.0 101 491 207 517 0.20570 4.7e-024 245 3 M6302_1.02 HOXD13 TCYCTAATAAA 9.8e0000 1.3e-002 -4.33 0.0 474 490 552 556 0.96735 5.4e-005 244 3 M6304_1.02 HOXD9 HMATNAAWYT 2.9e-008 3.9e-011 -23.96 0.0 55 491 114 498 0.11202 1.6e-013 245 3 M6312_1.02 IRF7 GAAASYGAAA 3.7e0000 5.0e-003 -5.31 0.0 77 491 124 553 0.15682 2.0e-005 245 3 M6328_1.02 LHX2 YRSDTKYAATWAG 3.3e0000 4.5e-003 -5.41 0.0 430 488 445 474 0.88115 1.8e-005 243 3 M6329_1.02 LHX3 AAAATTAATTARY 3.9e-082 5.3e-085 -194.05 0.0 62 488 234 457 0.12705 2.2e-087 243 3 M6330_1.02 MAFA BTGCTGACBMYGCARYHTYCV 2.2e-002 2.9e-005 -10.43 0.0 322 480 419 542 0.67083 1.2e-007 239 3 M6336_1.02 MAZ RGGGDRGGGAGGGRGGG 9.1e0000 1.2e-002 -4.40 0.0 340 484 424 545 0.70248 5.1e-005 241 3 M6348_1.02 MTF1 MGKGCCGTGTGCAAADS 1.0e-007 1.3e-010 -22.73 0.0 156 484 212 433 0.32231 5.6e-013 241 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 5.2e-001 7.0e-004 -7.27 0.0 319 489 422 569 0.65235 2.9e-006 244 3 M6374_1.02 NKX2-1 STCAAGKGCH 6.7e0000 9.0e-003 -4.71 0.0 297 491 393 573 0.60489 3.7e-005 245 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 1.4e-194 1.8e-197 -453.00 0.0 46 488 316 480 0.09426 7.6e-200 243 3 M6379_1.02 NKX3-2 ARYTAAGTGGV 8.2e0000 1.1e-002 -4.51 0.0 420 490 516 565 0.85714 4.5e-005 244 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 9.7e-192 1.3e-194 -446.44 0.0 60 480 338 463 0.12500 5.5e-197 239 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 1.9e-072 2.6e-075 -171.76 0.0 50 486 225 553 0.10288 1.1e-077 242 3 M6417_1.02 POU1F1 RWATATTCATKAR 1.2e-035 1.6e-038 -87.00 0.0 50 488 164 514 0.10246 6.8e-041 243 3 M6426_1.02 POU3F2 CATRAATWWT 1.1e-133 1.5e-136 -312.72 0.0 51 491 282 507 0.10387 6.3e-139 245 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 2.6e-024 3.6e-027 -60.90 0.0 84 486 193 499 0.17284 1.5e-029 242 3 M6442_1.02 PURA CCMBGCCCNCCMMYWCC 4.7e0000 6.3e-003 -5.07 0.0 330 484 434 571 0.68182 2.6e-005 241 3 M6471_1.02 SOX13 YATTGTTY 2.6e0000 3.5e-003 -5.67 0.0 83 493 132 551 0.16836 1.4e-005 246 3 M6476_1.02 SOX4 GAGAACAAAGSG 4.9e-001 6.6e-004 -7.32 0.0 111 489 161 511 0.22699 2.7e-006 244 3 M6510_1.02 TEF TGTTTATRTAAMTK 2.6e-029 3.4e-032 -72.45 0.0 67 487 186 535 0.13758 1.4e-034 243 3 M6542_1.02 ZBTB6 VGRTGATRGAGCC 9.2e-001 1.2e-003 -6.69 0.0 238 488 293 499 0.48770 5.1e-006 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 6.2e-193 8.3e-196 -449.19 0.0 52 490 319 457 0.10612 3.4e-198 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).