ChromHMM Report

Input Directory: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherHek293Data/BinarizedBeds
Output Directory: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherHek293Data/ChromHMMOutput
Number of States: 12
Assembly: hg38
Full ChromHMM command: LearnModel -p 5 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherHek293Data/BinarizedBeds /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherHek293Data/ChromHMMOutput 12 hg38

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • Hek293_12 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • Hek293_12 Browser Custom Track Dense File
  • Hek293_12 Browser Custom Track Expanded File

    State Enrichments

    Hek293_12 Enrichments


  • Hek293_12 Overlap Enrichment SVG File
  • Hek293_12 Overlap Enrichment Tab-Delimited Text File

  • Hek293_12_RefSeqTSS_neighborhood Enrichment SVG File
  • Hek293_12_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

  • Hek293_12_RefSeqTES_neighborhood Enrichment SVG File
  • Hek293_12_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File