******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:78629174-78629274 1.0000 100 chr3:178048652-178048752 1.0000 100 chr22:22122645-22122745 1.0000 100 chr15:20310576-20310676 1.0000 100 chr1:27518086-27518186 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chr6:150267751-150267851 1.0000 100 chr6:167839419-167839519 1.0000 100 chr12:49869029-49869129 1.0000 100 chr2:105235481-105235581 1.0000 100 chr5:154374239-154374339 1.0000 100 chr7:130051320-130051420 1.0000 100 chr5:140217531-140217631 1.0000 100 chr9:112094946-112095046 1.0000 100 chr1:227848445-227848545 1.0000 100 chr16:12420667-12420767 1.0000 100 chr10:119667606-11966770 1.0000 100 chr17:55655279-55655379 1.0000 100 chr1:175029817-175029917 1.0000 100 chr7:151520158-151520258 1.0000 100 chr7:6016200-6016300 1.0000 100 chr1:6912466-6912566 1.0000 100 chr1:207650320-207650420 1.0000 100 chr11:107859004-10785910 1.0000 100 chr19:40862566-40862666 1.0000 100 chr1:156085979-156086079 1.0000 100 chr3:4989080-4989180 1.0000 100 chr6:27519262-27519362 1.0000 100 chr11:47946578-47946678 1.0000 100 chr7:142878426-142878526 1.0000 100 chr19:28638417-28638517 1.0000 100 chr16:32284172-32284272 1.0000 100 chr11:70556882-70556982 1.0000 100 chr15:92903840-92903940 1.0000 100 chr9:116471218-116471318 1.0000 100 chr17:35560663-35560763 1.0000 100 chr4:128385608-128385708 1.0000 100 chr15:31025200-31025300 1.0000 100 chr16:63201775-63201875 1.0000 100 chr1:21453877-21453977 1.0000 100 chr6:28809253-28809353 1.0000 100 chr19:21458029-21458129 1.0000 100 chr12:111638037-11163813 1.0000 100 chr3:170778908-170779008 1.0000 100 chr1:42222129-42222229 1.0000 100 chr20:37941957-37942057 1.0000 100 chr7:6448235-6448335 1.0000 100 chr17:48856408-48856508 1.0000 100 chr1:225923883-225923983 1.0000 100 chr7:68249527-68249627 1.0000 100 chr5:154648813-154648913 1.0000 100 chr11:44065850-44065950 1.0000 100 chr6:97394055-97394155 1.0000 100 chr3:177359798-177359898 1.0000 100 chr8:133581543-133581643 1.0000 100 chr17:60315652-60315752 1.0000 100 chr2:48605682-48605782 1.0000 100 chr6:108565832-108565932 1.0000 100 chr1:154220052-154220152 1.0000 100 chr1:168220325-168220425 1.0000 100 chr6:147161237-147161337 1.0000 100 chr1:99768723-99768823 1.0000 100 chr10:4815072-4815172 1.0000 100 chr20:57452171-57452271 1.0000 100 chr18:841777-841877 1.0000 100 chr2:207247151-207247251 1.0000 100 chr7:158865430-158865530 1.0000 100 chr18:9017565-9017665 1.0000 100 chr5:126971399-126971499 1.0000 100 chr1:154936291-154936391 1.0000 100 chr17:75204715-75204815 1.0000 100 chr4:169823633-169823733 1.0000 100 chr16:80540533-80540633 1.0000 100 chr3:182618230-182618330 1.0000 100 chr3:13024182-13024282 1.0000 100 chr7:116417612-116417712 1.0000 100 chr7:72684051-72684151 1.0000 100 chr12:54931985-54932085 1.0000 100 chr4:168451698-168451798 1.0000 100 chr4:143405313-143405413 1.0000 100 chr10:72888099-72888199 1.0000 100 chr18:56214789-56214889 1.0000 100 chr17:28873349-28873449 1.0000 100 chr7:138527614-138527714 1.0000 100 chr1:41891569-41891669 1.0000 100 chr21:32278598-32278698 1.0000 100 chr21:46188482-46188582 1.0000 100 chr6:6881934-6882034 1.0000 100 chr10:15344806-15344906 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.264 C 0.236 G 0.236 T 0.264 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.262 C 0.238 G 0.238 T 0.262 ******************************************************************************** ******************************************************************************** MOTIF ATTCATTCATTCATTCATTC MEME-1 width = 20 sites = 132 llr = 2453 E-value = 1.5e-574 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8:::8:::9:::8:::9::: pos.-specific C 111822:912:911:a11:a probability G ::1:1:::::::1:::::1: matrix T :981:89::891:99::99: bits 2.1 1.9 * * 1.7 * * * * 1.4 * * ** *** * * Relative 1.2 ** * ****** ******* Entropy 1.0 ******************** (26.8 bits) 0.8 ******************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel ATTCATTCATTCATTCATTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr17:48856408-48856508 + 33 1.44e-12 AATGCTGTGc attcattcattcattcattc attcattcat chr16:63201775-63201875 - 18 1.44e-12 TCATTCATTC ATTCATTCATTCATTCATTC ATTCTTTCAG chr11:70556882-70556982 + 70 1.44e-12 TAAAAGCCtc attcattcattcattcattc attcattcat chr7:142878426-142878526 + 57 1.44e-12 ATAGGTGttc attcattcattcattcattc attcattcat chr17:55655279-55655379 - 2 1.44e-12 TCACTCATCC ATTCATTCATTCATTCATTC A chr11:108371942-10837204 + 37 1.44e-12 aaTTTTattc attcattcattcattcattc attcattcat chr14:68511632-68511732 + 50 1.44e-12 ATTGTAattc attcattcattcattcattc attcaGTTTT chr20:46249209-46249309 + 39 1.44e-12 TGTGGGAAtc attcattcattcattcattc aGCCACATGT chr19:5492203-5492303 - 62 1.44e-12 TCATTCATTC ATTCATTCATTCATTCATTC ATTCAGTGTT chr1:54518452-54518552 + 27 1.44e-12 CAGTCcattc attcattcattcattcattc attcattcat chr4:39079586-39079686 - 45 1.44e-12 AAAACTGCCC ATTCATTCATTCATTCATTC ATTTAATGAA chr3:185283246-185283346 - 33 1.44e-12 TGGTTGGTTC ATTCATTCATTCATTCATTC ATTCCTTCGA chr22:47694443-47694543 - 28 1.44e-12 TCACTCATTC ATTCATTCATTCATTCATTC ATTCCAGCCC chr1:235516042-235516142 + 55 1.44e-12 GTTGGATAGc attcattcattcattcattc attcattcat chr6:17876379-17876479 + 46 1.44e-12 gtgagacagc attcattcattcattcattc attcattcat chr16:57669459-57669559 + 37 1.44e-12 CCATTTGCGc attcattcattcattcattc attcaGGAAG chr1:23174659-23174759 + 74 1.44e-12 CATGCATttc attcattcattcattcattc attcatt chr9:76702363-76702463 - 48 1.44e-12 TAAATCAGTG ATTCATTCATTCATTCATTC ACCATGTGGT chr8:70144878-70144978 + 51 1.44e-12 TAGTAATttc attcattcattcattcattc attcTCTCTC chr2:20271888-20271988 - 71 1.44e-12 TCATTCATTC ATTCATTCATTCATTCATTC ATTTGACGAA chr4:123183722-123183822 + 16 1.44e-12 ttatttattc attcattcattcattcattc attcattcat chr3:58652165-58652265 + 11 1.44e-12 ctgtccatcc attcattcattcattcattc atctatccac chr14:100584317-10058441 + 65 1.44e-12 Gtcattcatc attcattcattcattcattc CTATAATGAT chr6:106301282-106301382 + 67 1.44e-12 GCAAATTTAG ATTCATTCATTCattcattc actgaacaaa chr5:172624595-172624695 + 54 1.44e-12 ttactccatc attcattcattcattcattc attcattcat chr21:36828148-36828248 - 23 1.44e-12 TCATTCATTC ATTCATTCATTCATTCATTC ATTCCACACA chr20:38278578-38278678 + 57 1.44e-12 AACTCcattc attcattcattcattcattc attcattcat chr1:63812240-63812340 - 72 1.44e-12 CATTCATCC ATTCATTCATTCATTCATTC AGTCAAAACT chr4:78606472-78606572 - 5 1.44e-12 ATTGATGTTC ATTCATTCATTCATTCATTC AAAG chr2:165891305-165891405 + 74 1.44e-12 AAAAAAattc attcattcattcattcattc attcatt chr17:57864835-57864935 - 27 1.44e-12 TCATTCATTC ATTCATTCATTCATTCATTC ATTTTGAGAC chr17:21354764-21354864 - 2 1.44e-12 GCCAACTTCC ATTCATTCATTCATTCATTC A chr14:90931886-90931986 + 32 1.44e-12 tcattcaatc attcattcattcattcattc atttgagaca chr5:90691557-90691657 + 15 1.44e-12 GTGGTTTttc attcattcattcattcattc acttattctt chr1:156944226-156944326 + 28 1.44e-12 GACACcattc attcattcattcattcattc attcattcaA chr8:8517097-8517197 - 73 2.74e-12 TTTCATTC ATTCACTCATTCATTCATTC ATTCATCCAT chr9:133734122-133734222 + 17 2.74e-12 Gcattcattc attcactcattcattcattc attcactcat chr1:7364593-7364693 - 78 2.74e-12 TTC ATTCACTCATTCATTCATTC ATCCATTCAC chr1:226147030-226147130 + 56 5.35e-12 tcattcattc attcattcactcattcattc aAATACctaa chr1:10821314-10821414 + 41 5.35e-12 AACCTTGCTC ATTCATTCactcattcattc agcacatatt chr14:100285974-10028607 + 29 5.35e-12 GCTCTCACCc attcattcactcattcattc aGCATGCTGA chr5:154374239-154374339 + 45 1.61e-11 CATTTTTttc actcattcattcattcattc attgagacag chr1:166174493-166174593 + 39 1.61e-11 tcacttattc atgcattcattcattcattc aCttgctgag chr22:40037832-40037932 + 2 1.61e-11 c attcattcattcgttcattc atttgttcaa chr17:45383894-45383994 + 48 1.61e-11 tcattcattc attcattcattcgttcattc attcattcat chr1:120217269-120217369 - 27 2.00e-11 TATCTCATTC ATTCGTTCATTCATTCATTC ATTCAATAAA chr10:11845757-11845857 + 10 2.26e-11 cattacttc attcattcattcattcatgc attcattcat chr19:17482805-17482905 - 5 2.54e-11 TCCTTCACTC ATTCCCTCATTCATTCATTC CCTC chr7:68249527-68249627 - 39 3.05e-11 CACTTCACTC ATTCACTCACTCATTCATTC ACTCATTTAG chr14:100451866-10045196 + 70 3.18e-11 cctccatgcc attcattcattcatccattc cgttctgttc chr1:10870447-10870547 + 39 4.23e-11 ttggatattc atttactcattcattcattc acttatccag chr1:156085979-156086079 + 10 4.74e-11 TGAATTTTC ATTCATTCGTTCattcattc agccagccac chr15:90198072-90198172 + 38 4.74e-11 CTCAAGTTGC ATTCattcattcattcatcc agtacttact chr17:39622978-39623078 - 35 5.77e-11 TCATTTACAC ATGCACTCATTCATTCATTC ACCCATCGTC chrX:150211845-150211945 + 62 5.77e-11 ccactcacac actcactcattcattcattc attctccatt chr2:98086572-98086672 + 61 1.07e-10 TTGTTTGtta attcattcattctttcattc atATTCTCCG chr6:4402238-4402338 + 64 1.60e-10 TCGTGCTttc atttgttcattcattcattc agccattcCT chr1:25707376-25707476 + 68 2.90e-10 AGGACTTACc attcattcatttgttcattc aGTGAGCCAC chr17:40516618-40516718 - 10 2.90e-10 GGGGCAGGCA ATTCATTCACTCATTCATAC ATATTTGTT chr3:149877656-149877756 + 23 2.90e-10 CTGCTAattc attcattcatttgttcattc attTCTTCCA chr10:71587062-71587162 + 61 3.20e-10 tcattcaatc attcctttattcattcattc atttgttcat chr1:23214145-23214245 + 79 3.58e-10 cagactctgt cAtcattcattcattcattc at chr4:7263708-7263808 + 30 4.06e-10 AACTtcattc attcactcactcactcattc actcactgac chr10:24906260-24906360 - 70 4.46e-10 GGTAAGGCAC ATCCATTCATTCATTCATAC AAGTCATTTG chr12:108110794-10811089 + 55 5.10e-10 tcattcactc actccttcactcattcattc actcactcat chr6:6881934-6882034 + 76 5.75e-10 tcattcatgc atgcatgcattcattcattc attgt chr1:205578782-205578882 + 5 6.34e-10 CTCc atccaatcattcattcattc aCTGATAGGG chr14:69318224-69318324 - 53 1.08e-09 TCACTCATCC ATTCATGCATGCATTCATTC AACAAAGCTC chr10:4734871-4734971 + 77 1.48e-09 tcattccttc cttccctcattccttcattc cttc chr2:46900384-46900484 + 43 2.50e-09 GAAGtcactc attaattcatccattcattc actcagcatt chr13:113850836-11385093 - 25 2.50e-09 TCATCCATCC ACTCATTCATTTGTTCATTC ATCCATCTCT chr7:143370859-143370959 + 23 2.50e-09 tagttttttc CATTATTCattcattcattc catattacag chr16:8564160-8564260 - 43 2.75e-09 TCACTCACTC ATTTACTCACTCACTCATTC ACTCACTCAC chr20:2431058-2431158 + 55 2.75e-09 atttgctctc tttcactcattcattcatgc attcttcaat chr1:4064548-4064648 + 4 3.37e-09 ttc attcatacactcattcactc acacactcac chr16:8562530-8562630 - 64 3.37e-09 TCCCTCACTC ATTTACTCACTCATTCACTC ACTTACTCAT chr6:166466724-166466824 + 78 4.07e-09 tcactcactc ctttactcattcattcactc att chr15:63899039-63899139 + 43 4.51e-09 tccctccttc cttcattccctccttcattc cctcccaccc chr6:125769519-125769619 - 12 4.51e-09 TCCATCAGTC ATGCATTCATGTATTCATTC ATTTAACCAA chr1:27040906-27041006 - 22 4.51e-09 GAGTGCTTTC ATTCATTCATCCCTCCATTC ACTCATTCAG chr21:33229343-33229443 + 57 4.51e-09 TCTTTAGTTC ATTCATTCattcagtcagtc aacacatctt chr17:27323789-27323889 + 36 4.51e-09 CTGGtcatcc atgcactcacttattcattc attaattcat chr4:2447038-2447138 - 62 4.92e-09 CCATGCATGT ATCCATCCATCCATTCATTC ACTTATCCTT chr20:32621353-32621453 + 21 4.92e-09 gaatTTGCTC ATTTGATCattcattcattc aacaaatgta chr4:126880849-126880949 + 34 5.38e-09 CATTTCGTTC ATTCAGTCAAtcattcattc acttttttga chr15:66566187-66566287 + 9 7.19e-09 attcattt ctttcctcactcattcattc aACCAGCACC chr17:41797334-41797434 + 10 7.94e-09 cctgcctcc cttcattcatttcttccttc tgtcctccct chr8:8698307-8698407 + 57 7.94e-09 TAATGTCAGC AATCATTCATTCATTCCTAC CACAGAGTGA chrX:153333626-153333726 + 55 1.05e-08 GGTCccttcc attccttcgttccttccttc GTCTGCTGGT chr1:200510728-200510828 - 32 1.05e-08 GGACTCATTC ATTTCTTCATGCACTCATTC ATTCATAAAT chr6:97394055-97394155 - 4 1.26e-08 ATGTGTTGAT ATCCAAGCATTCATTCATTC AAC chr7:101556343-101556443 - 14 1.26e-08 CCATCCACCC ATTCATTTATTCATCCATGC ATCTACCCAT chr4:8282956-8283056 - 11 1.38e-08 ACACTCACTC ATTCCCTCCCTCACTCATTC ATTCTGCCAC chr2:95037011-95037111 - 24 1.38e-08 TCAGTCACTC ATTCACTCACTCAGTCACTC ACTCACTTGG chr9:20684778-20684878 + 78 1.65e-08 TGCCAATttc atgcagtcattcattcatac att chr6:43929203-43929303 + 51 1.80e-08 AAAGTTGCtc atccattcattcacttattc attTGTGTCA chr17:28903435-28903535 + 40 2.14e-08 ctttcctttc cttccttccttccttccttc cttccttccc chr4:173021777-173021877 - 58 2.14e-08 TCCTTCCTTC CTTCCTTCCTTCCTTCCTTC CTTCTTTCCT chr12:108239980-10824008 - 49 2.14e-08 ATCCTCATGC ATTTGTTCACTCAGTCATTC GCGTATTTAT chr4:143405313-143405413 + 67 2.55e-08 GAATTAAGAc attcattcatttgttcattt attcaGGCAA chr4:13483079-13483179 + 7 4.26e-08 ATTCTC ACGCCCGCATTCATTCATTC GAACAGGGGA chr17:33410803-33410903 - 80 4.26e-08 C ATTCATTCATTCACTCATAA TTCACATATT chr11:126353066-12635316 - 63 5.04e-08 TCTTTTCTTC CTTCCTTCTTTCCTTCCTTC CTTTCTCTCT chr21:43322784-43322884 - 71 5.04e-08 ATCGCCAGCC ATGCATTCATTCACTCGCTC ATCAAACCTA chr16:80540533-80540633 - 22 5.47e-08 GTGTTTGTCC ATTCATTCATTCATTGAGGC ACGAATTAAT chr19:40549359-40549459 + 53 5.47e-08 tcatgaagtc actcatttatttattcactc atccatagtt chr4:709163-709263 - 57 5.47e-08 CACTCTTGCC TTTCATTCATTTGTTCATGC ATCATTCACT chr3:9206722-9206822 - 71 6.46e-08 GCTGAAGTTG ATCCATTGAGTCATTCATTC AGCAAATCTT chr1:173248255-173248355 - 21 7.00e-08 TCTTTCTTTC TTTCCTTCCTTCCTTCCTTC TTTCTTTTTC chr15:90148787-90148887 - 58 1.13e-07 TTCTTTCTTC CCTCCTTCCTTCCTTCCTTC CTCTCTCTCT chr8:105069997-105070097 + 63 1.32e-07 ccctccctcc cttcatcctttccttccttc actctttcct chr5:43212343-43212443 + 21 1.43e-07 GCTCAGCAGG ACTCCCTCATTCCTTCCTCC CATCTCTAGT chr20:53750701-53750801 - 53 1.43e-07 AGTCAGCCTC CTTTACTCCTTCGTTCATGC AGTTAATAAG chr16:82051040-82051140 - 40 1.80e-07 TTGCTCATGC ATTCATTCATGCGTGCATGC ATTTCTTCAA chr4:8522514-8522614 - 5 1.80e-07 TTTGGGGCCA AACTGTCCATTCATTCATTC ATTC chr1:65254874-65254974 + 74 1.95e-07 CAATCACTGA CTCACTCCattcattcattc cacaatt chr6:137612669-137612769 + 33 2.27e-07 AGCAtcattc atttgttcattaattcgttc aCCTATTTTT chr20:31993341-31993441 + 63 3.06e-07 CATATAGATT AAGCACACTttcattcattc agcccatata chr15:31025200-31025300 + 65 3.29e-07 ACCTGACTTC ATTTACTCATTCACTGGTTC ACACATCCTG chr19:15812321-15812421 - 4 3.29e-07 CCTCCCTCAC TCTCCTTCCTTCCTTCCTTC GTT chr7:6016200-6016300 + 70 3.54e-07 GTATTCCTTC CTCTGCTCCCTCATTCATTC AGTACTTGTT chr12:121124693-12112479 + 11 4.40e-07 cctccccttc cttccttgcttccttccttc cttcctccct chr9:123340873-123340973 + 75 4.73e-07 ttatttactc atctctactctcattcattc attcat chr19:55580873-55580973 + 80 5.08e-07 CAACATGCAC ACACACATATTCattcattc c chr3:13024182-13024282 + 5 5.46e-07 atcc atccatccatccatccatcc atccatccat chrX:2828143-2828243 + 27 5.46e-07 CACGCCTCAC ATGCATTCACGCATACATGC ACTCACGCAT chr16:23948970-23949070 - 51 6.28e-07 TCTTTTGTCC ATTCGTTCGTTCTTTCTTTC TTTTGTTTGT chr6:125374966-125375066 + 55 1.34e-06 ccttcttttc ctCTGTTTAttccttccttc ctctctccct chr19:415169-415269 - 36 2.74e-06 TCAGTAACCC ACTCATCCATCCATCCACCC ATCATACATC chr16:10904773-10904873 + 12 3.75e-06 tcatttcacc attcactcCACCACTCCCTC AAATAATATT chr6:167839419-167839519 + 52 7.30e-06 TTCTGTCTCC ATTTCCACGTTCACTcattg agtggtcatc chr1:109100001-109100101 - 77 1.30e-05 ACTC ACACACTCACGCGTCCACTC ACACTCACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:48856408-48856508 1.4e-12 32_[+1]_48 chr16:63201775-63201875 1.4e-12 17_[-1]_63 chr11:70556882-70556982 1.4e-12 69_[+1]_11 chr7:142878426-142878526 1.4e-12 56_[+1]_24 chr17:55655279-55655379 1.4e-12 1_[-1]_79 chr11:108371942-10837204 1.4e-12 36_[+1]_44 chr14:68511632-68511732 1.4e-12 49_[+1]_31 chr20:46249209-46249309 1.4e-12 38_[+1]_42 chr19:5492203-5492303 1.4e-12 61_[-1]_19 chr1:54518452-54518552 1.4e-12 26_[+1]_54 chr4:39079586-39079686 1.4e-12 44_[-1]_36 chr3:185283246-185283346 1.4e-12 32_[-1]_48 chr22:47694443-47694543 1.4e-12 27_[-1]_53 chr1:235516042-235516142 1.4e-12 54_[+1]_26 chr6:17876379-17876479 1.4e-12 45_[+1]_35 chr16:57669459-57669559 1.4e-12 36_[+1]_44 chr1:23174659-23174759 1.4e-12 73_[+1]_7 chr9:76702363-76702463 1.4e-12 47_[-1]_33 chr8:70144878-70144978 1.4e-12 50_[+1]_30 chr2:20271888-20271988 1.4e-12 70_[-1]_10 chr4:123183722-123183822 1.4e-12 15_[+1]_65 chr3:58652165-58652265 1.4e-12 10_[+1]_70 chr14:100584317-10058441 1.4e-12 64_[+1]_16 chr6:106301282-106301382 1.4e-12 66_[+1]_14 chr5:172624595-172624695 1.4e-12 53_[+1]_27 chr21:36828148-36828248 1.4e-12 22_[-1]_58 chr20:38278578-38278678 1.4e-12 56_[+1]_24 chr1:63812240-63812340 1.4e-12 71_[-1]_9 chr4:78606472-78606572 1.4e-12 4_[-1]_76 chr2:165891305-165891405 1.4e-12 73_[+1]_7 chr17:57864835-57864935 1.4e-12 26_[-1]_54 chr17:21354764-21354864 1.4e-12 1_[-1]_79 chr14:90931886-90931986 1.4e-12 31_[+1]_49 chr5:90691557-90691657 1.4e-12 14_[+1]_66 chr1:156944226-156944326 1.4e-12 27_[+1]_53 chr8:8517097-8517197 2.7e-12 72_[-1]_8 chr9:133734122-133734222 2.7e-12 16_[+1]_64 chr1:7364593-7364693 2.7e-12 77_[-1]_3 chr1:226147030-226147130 5.4e-12 55_[+1]_25 chr1:10821314-10821414 5.4e-12 40_[+1]_40 chr14:100285974-10028607 5.4e-12 28_[+1]_52 chr5:154374239-154374339 1.6e-11 44_[+1]_36 chr1:166174493-166174593 1.6e-11 38_[+1]_42 chr22:40037832-40037932 1.6e-11 1_[+1]_79 chr17:45383894-45383994 1.6e-11 47_[+1]_33 chr1:120217269-120217369 2e-11 26_[-1]_54 chr10:11845757-11845857 2.3e-11 9_[+1]_71 chr19:17482805-17482905 2.5e-11 4_[-1]_76 chr7:68249527-68249627 3e-11 38_[-1]_42 chr14:100451866-10045196 3.2e-11 69_[+1]_11 chr1:10870447-10870547 4.2e-11 38_[+1]_42 chr1:156085979-156086079 4.7e-11 9_[+1]_71 chr15:90198072-90198172 4.7e-11 37_[+1]_43 chr17:39622978-39623078 5.8e-11 34_[-1]_46 chrX:150211845-150211945 5.8e-11 61_[+1]_19 chr2:98086572-98086672 1.1e-10 60_[+1]_20 chr6:4402238-4402338 1.6e-10 63_[+1]_17 chr1:25707376-25707476 2.9e-10 67_[+1]_13 chr17:40516618-40516718 2.9e-10 9_[-1]_71 chr3:149877656-149877756 2.9e-10 22_[+1]_58 chr10:71587062-71587162 3.2e-10 60_[+1]_20 chr1:23214145-23214245 3.6e-10 78_[+1]_2 chr4:7263708-7263808 4.1e-10 29_[+1]_51 chr10:24906260-24906360 4.5e-10 69_[-1]_11 chr12:108110794-10811089 5.1e-10 54_[+1]_26 chr6:6881934-6882034 5.8e-10 75_[+1]_5 chr1:205578782-205578882 6.3e-10 4_[+1]_76 chr14:69318224-69318324 1.1e-09 52_[-1]_28 chr10:4734871-4734971 1.5e-09 76_[+1]_4 chr2:46900384-46900484 2.5e-09 42_[+1]_38 chr13:113850836-11385093 2.5e-09 24_[-1]_56 chr7:143370859-143370959 2.5e-09 22_[+1]_58 chr16:8564160-8564260 2.8e-09 42_[-1]_38 chr20:2431058-2431158 2.8e-09 54_[+1]_26 chr1:4064548-4064648 3.4e-09 3_[+1]_77 chr16:8562530-8562630 3.4e-09 63_[-1]_17 chr6:166466724-166466824 4.1e-09 77_[+1]_3 chr15:63899039-63899139 4.5e-09 42_[+1]_38 chr6:125769519-125769619 4.5e-09 11_[-1]_69 chr1:27040906-27041006 4.5e-09 21_[-1]_59 chr21:33229343-33229443 4.5e-09 56_[+1]_24 chr17:27323789-27323889 4.5e-09 35_[+1]_45 chr4:2447038-2447138 4.9e-09 61_[-1]_19 chr20:32621353-32621453 4.9e-09 20_[+1]_60 chr4:126880849-126880949 5.4e-09 33_[+1]_47 chr15:66566187-66566287 7.2e-09 8_[+1]_72 chr17:41797334-41797434 7.9e-09 9_[+1]_71 chr8:8698307-8698407 7.9e-09 56_[+1]_24 chrX:153333626-153333726 1e-08 54_[+1]_26 chr1:200510728-200510828 1e-08 31_[-1]_49 chr6:97394055-97394155 1.3e-08 3_[-1]_77 chr7:101556343-101556443 1.3e-08 13_[-1]_67 chr4:8282956-8283056 1.4e-08 10_[-1]_70 chr2:95037011-95037111 1.4e-08 23_[-1]_57 chr9:20684778-20684878 1.6e-08 77_[+1]_3 chr6:43929203-43929303 1.8e-08 50_[+1]_30 chr17:28903435-28903535 2.1e-08 39_[+1]_41 chr4:173021777-173021877 2.1e-08 57_[-1]_23 chr12:108239980-10824008 2.1e-08 48_[-1]_32 chr4:143405313-143405413 2.5e-08 66_[+1]_14 chr4:13483079-13483179 4.3e-08 6_[+1]_74 chr17:33410803-33410903 4.3e-08 79_[-1]_1 chr11:126353066-12635316 5e-08 62_[-1]_18 chr21:43322784-43322884 5e-08 70_[-1]_10 chr16:80540533-80540633 5.5e-08 21_[-1]_59 chr19:40549359-40549459 5.5e-08 52_[+1]_28 chr4:709163-709263 5.5e-08 56_[-1]_24 chr3:9206722-9206822 6.5e-08 70_[-1]_10 chr1:173248255-173248355 7e-08 20_[-1]_60 chr15:90148787-90148887 1.1e-07 57_[-1]_23 chr8:105069997-105070097 1.3e-07 62_[+1]_18 chr5:43212343-43212443 1.4e-07 20_[+1]_60 chr20:53750701-53750801 1.4e-07 52_[-1]_28 chr16:82051040-82051140 1.8e-07 39_[-1]_41 chr4:8522514-8522614 1.8e-07 4_[-1]_76 chr1:65254874-65254974 1.9e-07 73_[+1]_7 chr6:137612669-137612769 2.3e-07 32_[+1]_48 chr20:31993341-31993441 3.1e-07 62_[+1]_18 chr15:31025200-31025300 3.3e-07 64_[+1]_16 chr19:15812321-15812421 3.3e-07 3_[-1]_77 chr7:6016200-6016300 3.5e-07 69_[+1]_11 chr12:121124693-12112479 4.4e-07 10_[+1]_70 chr9:123340873-123340973 4.7e-07 74_[+1]_6 chr19:55580873-55580973 5.1e-07 79_[+1]_1 chr3:13024182-13024282 5.5e-07 4_[+1]_76 chrX:2828143-2828243 5.5e-07 26_[+1]_54 chr16:23948970-23949070 6.3e-07 50_[-1]_30 chr6:125374966-125375066 1.3e-06 54_[+1]_26 chr19:415169-415269 2.7e-06 35_[-1]_45 chr16:10904773-10904873 3.7e-06 11_[+1]_69 chr6:167839419-167839519 7.3e-06 51_[+1]_29 chr1:109100001-109100101 1.3e-05 76_[-1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTCATTCATTCATTCATTC width=20 seqs=132 chr17:48856408-48856508 ( 33) ATTCATTCATTCATTCATTC 1 chr16:63201775-63201875 ( 18) ATTCATTCATTCATTCATTC 1 chr11:70556882-70556982 ( 70) ATTCATTCATTCATTCATTC 1 chr7:142878426-142878526 ( 57) ATTCATTCATTCATTCATTC 1 chr17:55655279-55655379 ( 2) ATTCATTCATTCATTCATTC 1 chr11:108371942-10837204 ( 37) ATTCATTCATTCATTCATTC 1 chr14:68511632-68511732 ( 50) ATTCATTCATTCATTCATTC 1 chr20:46249209-46249309 ( 39) ATTCATTCATTCATTCATTC 1 chr19:5492203-5492303 ( 62) ATTCATTCATTCATTCATTC 1 chr1:54518452-54518552 ( 27) ATTCATTCATTCATTCATTC 1 chr4:39079586-39079686 ( 45) ATTCATTCATTCATTCATTC 1 chr3:185283246-185283346 ( 33) ATTCATTCATTCATTCATTC 1 chr22:47694443-47694543 ( 28) ATTCATTCATTCATTCATTC 1 chr1:235516042-235516142 ( 55) ATTCATTCATTCATTCATTC 1 chr6:17876379-17876479 ( 46) ATTCATTCATTCATTCATTC 1 chr16:57669459-57669559 ( 37) ATTCATTCATTCATTCATTC 1 chr1:23174659-23174759 ( 74) ATTCATTCATTCATTCATTC 1 chr9:76702363-76702463 ( 48) ATTCATTCATTCATTCATTC 1 chr8:70144878-70144978 ( 51) ATTCATTCATTCATTCATTC 1 chr2:20271888-20271988 ( 71) ATTCATTCATTCATTCATTC 1 chr4:123183722-123183822 ( 16) ATTCATTCATTCATTCATTC 1 chr3:58652165-58652265 ( 11) ATTCATTCATTCATTCATTC 1 chr14:100584317-10058441 ( 65) ATTCATTCATTCATTCATTC 1 chr6:106301282-106301382 ( 67) ATTCATTCATTCATTCATTC 1 chr5:172624595-172624695 ( 54) ATTCATTCATTCATTCATTC 1 chr21:36828148-36828248 ( 23) ATTCATTCATTCATTCATTC 1 chr20:38278578-38278678 ( 57) ATTCATTCATTCATTCATTC 1 chr1:63812240-63812340 ( 72) ATTCATTCATTCATTCATTC 1 chr4:78606472-78606572 ( 5) ATTCATTCATTCATTCATTC 1 chr2:165891305-165891405 ( 74) ATTCATTCATTCATTCATTC 1 chr17:57864835-57864935 ( 27) ATTCATTCATTCATTCATTC 1 chr17:21354764-21354864 ( 2) ATTCATTCATTCATTCATTC 1 chr14:90931886-90931986 ( 32) ATTCATTCATTCATTCATTC 1 chr5:90691557-90691657 ( 15) ATTCATTCATTCATTCATTC 1 chr1:156944226-156944326 ( 28) ATTCATTCATTCATTCATTC 1 chr8:8517097-8517197 ( 73) ATTCACTCATTCATTCATTC 1 chr9:133734122-133734222 ( 17) ATTCACTCATTCATTCATTC 1 chr1:7364593-7364693 ( 78) ATTCACTCATTCATTCATTC 1 chr1:226147030-226147130 ( 56) ATTCATTCACTCATTCATTC 1 chr1:10821314-10821414 ( 41) ATTCATTCACTCATTCATTC 1 chr14:100285974-10028607 ( 29) ATTCATTCACTCATTCATTC 1 chr5:154374239-154374339 ( 45) ACTCATTCATTCATTCATTC 1 chr1:166174493-166174593 ( 39) ATGCATTCATTCATTCATTC 1 chr22:40037832-40037932 ( 2) ATTCATTCATTCGTTCATTC 1 chr17:45383894-45383994 ( 48) ATTCATTCATTCGTTCATTC 1 chr1:120217269-120217369 ( 27) ATTCGTTCATTCATTCATTC 1 chr10:11845757-11845857 ( 10) ATTCATTCATTCATTCATGC 1 chr19:17482805-17482905 ( 5) ATTCCCTCATTCATTCATTC 1 chr7:68249527-68249627 ( 39) ATTCACTCACTCATTCATTC 1 chr14:100451866-10045196 ( 70) ATTCATTCATTCATCCATTC 1 chr1:10870447-10870547 ( 39) ATTTACTCATTCATTCATTC 1 chr1:156085979-156086079 ( 10) ATTCATTCGTTCATTCATTC 1 chr15:90198072-90198172 ( 38) ATTCATTCATTCATTCATCC 1 chr17:39622978-39623078 ( 35) ATGCACTCATTCATTCATTC 1 chrX:150211845-150211945 ( 62) ACTCACTCATTCATTCATTC 1 chr2:98086572-98086672 ( 61) ATTCATTCATTCTTTCATTC 1 chr6:4402238-4402338 ( 64) ATTTGTTCATTCATTCATTC 1 chr1:25707376-25707476 ( 68) ATTCATTCATTTGTTCATTC 1 chr17:40516618-40516718 ( 10) ATTCATTCACTCATTCATAC 1 chr3:149877656-149877756 ( 23) ATTCATTCATTTGTTCATTC 1 chr10:71587062-71587162 ( 61) ATTCCTTTATTCATTCATTC 1 chr1:23214145-23214245 ( 79) CATCATTCATTCATTCATTC 1 chr4:7263708-7263808 ( 30) ATTCACTCACTCACTCATTC 1 chr10:24906260-24906360 ( 70) ATCCATTCATTCATTCATAC 1 chr12:108110794-10811089 ( 55) ACTCCTTCACTCATTCATTC 1 chr6:6881934-6882034 ( 76) ATGCATGCATTCATTCATTC 1 chr1:205578782-205578882 ( 5) ATCCAATCATTCATTCATTC 1 chr14:69318224-69318324 ( 53) ATTCATGCATGCATTCATTC 1 chr10:4734871-4734971 ( 77) CTTCCCTCATTCCTTCATTC 1 chr2:46900384-46900484 ( 43) ATTAATTCATCCATTCATTC 1 chr13:113850836-11385093 ( 25) ACTCATTCATTTGTTCATTC 1 chr7:143370859-143370959 ( 23) CATTATTCATTCATTCATTC 1 chr16:8564160-8564260 ( 43) ATTTACTCACTCACTCATTC 1 chr20:2431058-2431158 ( 55) TTTCACTCATTCATTCATGC 1 chr1:4064548-4064648 ( 4) ATTCATACACTCATTCACTC 1 chr16:8562530-8562630 ( 64) ATTTACTCACTCATTCACTC 1 chr6:166466724-166466824 ( 78) CTTTACTCATTCATTCACTC 1 chr15:63899039-63899139 ( 43) CTTCATTCCCTCCTTCATTC 1 chr6:125769519-125769619 ( 12) ATGCATTCATGTATTCATTC 1 chr1:27040906-27041006 ( 22) ATTCATTCATCCCTCCATTC 1 chr21:33229343-33229443 ( 57) ATTCATTCATTCAGTCAGTC 1 chr17:27323789-27323889 ( 36) ATGCACTCACTTATTCATTC 1 chr4:2447038-2447138 ( 62) ATCCATCCATCCATTCATTC 1 chr20:32621353-32621453 ( 21) ATTTGATCATTCATTCATTC 1 chr4:126880849-126880949 ( 34) ATTCAGTCAATCATTCATTC 1 chr15:66566187-66566287 ( 9) CTTTCCTCACTCATTCATTC 1 chr17:41797334-41797434 ( 10) CTTCATTCATTTCTTCCTTC 1 chr8:8698307-8698407 ( 57) AATCATTCATTCATTCCTAC 1 chrX:153333626-153333726 ( 55) ATTCCTTCGTTCCTTCCTTC 1 chr1:200510728-200510828 ( 32) ATTTCTTCATGCACTCATTC 1 chr6:97394055-97394155 ( 4) ATCCAAGCATTCATTCATTC 1 chr7:101556343-101556443 ( 14) ATTCATTTATTCATCCATGC 1 chr4:8282956-8283056 ( 11) ATTCCCTCCCTCACTCATTC 1 chr2:95037011-95037111 ( 24) ATTCACTCACTCAGTCACTC 1 chr9:20684778-20684878 ( 78) ATGCAGTCATTCATTCATAC 1 chr6:43929203-43929303 ( 51) ATCCATTCATTCACTTATTC 1 chr17:28903435-28903535 ( 40) CTTCCTTCCTTCCTTCCTTC 1 chr4:173021777-173021877 ( 58) CTTCCTTCCTTCCTTCCTTC 1 chr12:108239980-10824008 ( 49) ATTTGTTCACTCAGTCATTC 1 chr4:143405313-143405413 ( 67) ATTCATTCATTTGTTCATTT 1 chr4:13483079-13483179 ( 7) ACGCCCGCATTCATTCATTC 1 chr17:33410803-33410903 ( 80) ATTCATTCATTCACTCATAA 1 chr11:126353066-12635316 ( 63) CTTCCTTCTTTCCTTCCTTC 1 chr21:43322784-43322884 ( 71) ATGCATTCATTCACTCGCTC 1 chr16:80540533-80540633 ( 22) ATTCATTCATTCATTGAGGC 1 chr19:40549359-40549459 ( 53) ACTCATTTATTTATTCACTC 1 chr4:709163-709263 ( 57) TTTCATTCATTTGTTCATGC 1 chr3:9206722-9206822 ( 71) ATCCATTGAGTCATTCATTC 1 chr1:173248255-173248355 ( 21) TTTCCTTCCTTCCTTCCTTC 1 chr15:90148787-90148887 ( 58) CCTCCTTCCTTCCTTCCTTC 1 chr8:105069997-105070097 ( 63) CTTCATCCTTTCCTTCCTTC 1 chr5:43212343-43212443 ( 21) ACTCCCTCATTCCTTCCTCC 1 chr20:53750701-53750801 ( 53) CTTTACTCCTTCGTTCATGC 1 chr16:82051040-82051140 ( 40) ATTCATTCATGCGTGCATGC 1 chr4:8522514-8522614 ( 5) AACTGTCCATTCATTCATTC 1 chr1:65254874-65254974 ( 74) CTCACTCCATTCATTCATTC 1 chr6:137612669-137612769 ( 33) ATTTGTTCATTAATTCGTTC 1 chr20:31993341-31993441 ( 63) AAGCACACTTTCATTCATTC 1 chr15:31025200-31025300 ( 65) ATTTACTCATTCACTGGTTC 1 chr19:15812321-15812421 ( 4) TCTCCTTCCTTCCTTCCTTC 1 chr7:6016200-6016300 ( 70) CTCTGCTCCCTCATTCATTC 1 chr12:121124693-12112479 ( 11) CTTCCTTGCTTCCTTCCTTC 1 chr9:123340873-123340973 ( 75) ATCTCTACTCTCATTCATTC 1 chr19:55580873-55580973 ( 80) ACACACATATTCATTCATTC 1 chr3:13024182-13024282 ( 5) ATCCATCCATCCATCCATCC 1 chrX:2828143-2828243 ( 27) ATGCATTCACGCATACATGC 1 chr16:23948970-23949070 ( 51) ATTCGTTCGTTCTTTCTTTC 1 chr6:125374966-125375066 ( 55) CTCTGTTTATTCCTTCCTTC 1 chr19:415169-415269 ( 36) ACTCATCCATCCATCCACCC 1 chr16:10904773-10904873 ( 12) ATTCACTCCACCACTCCCTC 1 chr6:167839419-167839519 ( 52) ATTTCCACGTTCACTCATTG 1 chr1:109100001-109100101 ( 77) ACACACTCACGCGTCCACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 10.2747 E= 1.5e-574 168 -89 -1369 -311 -279 -139 -1369 174 -411 -139 -165 164 -411 183 -1369 -94 158 -65 -181 -1369 -352 -17 -397 152 -279 -239 -297 176 -1369 199 -397 -279 171 -152 -297 -311 -411 -65 -497 166 -1369 -239 -239 180 -511 196 -1369 -194 160 -107 -165 -411 -1369 -165 -339 178 -511 -239 -497 184 -1369 204 -397 -511 172 -117 -339 -511 -1369 -181 -397 181 -279 -297 -197 174 -511 204 -497 -511 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 132 E= 1.5e-574 0.840909 0.128788 0.000000 0.030303 0.037879 0.090909 0.000000 0.871212 0.015152 0.090909 0.075758 0.818182 0.015152 0.848485 0.000000 0.136364 0.780303 0.151515 0.068182 0.000000 0.022727 0.212121 0.015152 0.750000 0.037879 0.045455 0.030303 0.886364 0.000000 0.946970 0.015152 0.037879 0.856061 0.083333 0.030303 0.030303 0.015152 0.151515 0.007576 0.825758 0.000000 0.045455 0.045455 0.909091 0.007576 0.924242 0.000000 0.068182 0.795455 0.113636 0.075758 0.015152 0.000000 0.075758 0.022727 0.901515 0.007576 0.045455 0.007576 0.939394 0.000000 0.977273 0.015152 0.007576 0.863636 0.106061 0.022727 0.007576 0.000000 0.068182 0.015152 0.916667 0.037879 0.030303 0.060606 0.871212 0.007576 0.977273 0.007576 0.007576 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCATTCATTCATTCATTC MEME-1 regular expression -------------------------------------------------------------------------------- ATTCA[TC]TCATTCATTCATTC -------------------------------------------------------------------------------- Time 357.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGAGGCYGAGGCRGGAGRATC MEME-2 width = 22 sites = 34 llr = 728 E-value = 1.3e-135 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 211a::::291::51:6:49:: pos.-specific C ::::::94:1::8:::2::::7 probability G 799:a91:7:99:59a1a6111 matrix T 1::::::6::::21::1:::92 bits 2.1 * 1.9 ** * * 1.7 *** *** * * ** 1.4 ****** **** ** * ** Relative 1.2 ****** **** ** * ** Entropy 1.0 ************ ** **** (30.9 bits) 0.8 **************** ***** 0.6 **************** ***** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GGGAGGCTGAGGCAGGAGGATC consensus CA G C A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:55996366-55996466 - 15 3.43e-14 CCCAGTACTC GGGAGGCTGAGGCGGGAGGATC GCTTAAGCCC chr3:49429270-49429370 - 50 2.17e-13 CCAGCTACTA GGGAGGCTGAGGCAGGAGAATC GCTTGAATCC chr6:28790326-28790426 + 17 2.17e-13 ccagctactc gggaggctgaggcaggagaatc gcttgaactc chr1:155308093-155308193 - 12 9.40e-13 CCAGCACTTT GGGAGGCCGAGGCGGGTGGATC ATGAGGTCAG chr1:108876296-108876396 - 11 1.93e-12 CCAGCTACTC AGGAGGCTGAGGCAGGAGAATC GCTTGAATCC chr6:30497046-30497146 + 53 1.93e-12 ctagctactc aggaggctgaggcaggagaatc gcttgaaccc chr1:182790508-182790608 - 39 3.43e-12 CCAGCTACTC GGGAGGCTGAGGCAGGAGAATG GCGTGAACCT chr17:28873349-28873449 + 53 3.98e-12 ccagcacttt gggaggctgaggcaggtggatt gcttgagcct chr6:27389298-27389398 + 72 3.98e-12 ccagcacttt gggaggccaaggcgggcggatc acctgag chr8:144767177-144767277 - 74 3.98e-12 CACTT TGGAGGCTGAGGCAGGAGGATC ACTTGAGCCC chr2:218287968-218288068 + 19 3.98e-12 ccagcacttt gggaggccaaggcgggcggatc acgaggtcag chr1:146039380-146039480 + 77 5.10e-12 ccagtacttt gggaggccgaggtgggcggatc ac chr5:154648813-154648913 + 25 1.30e-11 tcagcacttt gggaggccgaagcgggcggatc atgaggtcag chr15:56352093-56352193 - 55 1.43e-11 CCAGTTACTG GGAAGGCTGAGGCAGGAGAATT GCTTGAACCC chr1:52833785-52833885 + 12 1.97e-11 ccagcacttt gggaggccaaggcgggcggatt gtttcaggtc chr1:99768723-99768823 + 66 2.20e-11 ccagctactc aggaggctgaggcaggagaatg cttgaacctg chr12:111638037-11163813 + 30 3.93e-11 ccagcacttt gggaggccaaggtgggtggatc acttgaggtc chr3:5563809-5563909 + 76 3.93e-11 ccagcatttt gggaggccaaggtgggtggatc atg chr11:47939650-47939750 + 74 4.82e-11 ccagctactc aggaggctaaggcaggagaatt gcttg chr3:45859100-45859200 - 29 5.33e-11 CCAGCTACTT GGGAGGGTGCGGCAGGAGGATC ACTTGAGGCC chr4:24584774-24584874 + 64 6.42e-11 ccaacgcttt gggagaccgaggcgggtggatc acgaggtcag chr17:44017775-44017875 + 43 6.42e-11 ccaactattc aggaggctgaggcagaaggatc gcttgaacct chr5:39004660-39004760 - 25 6.42e-11 CCAGCTACTA GGGAGGCTGAAGCAGGGGAATC GCTTGAACGT chr5:32369490-32369590 + 15 1.11e-10 ctatgtacgt gggaggctgagttaggagaatc gcttaagcct chr20:32744692-32744792 + 53 1.58e-10 cccagctact cggaggctgaggcaagaggatc acttgagatc chr17:75204715-75204815 - 37 2.41e-10 CCAGCTACTC GGAAGGCTGAGGCAAGAGAATT GTTCCAACCC chr1:230983905-230984005 + 38 2.41e-10 ccaactactc aggaggttgaggtgggaggatc acttgagcca chr3:172541139-172541239 - 19 2.62e-10 CCAGCACTTT GGAAGGCTGAGGCGGGCGGGTT ACTTGAGGTC chr7:6448235-6448335 - 11 4.63e-10 CTAGCACTTT GAGAGGCCCAGGCGGGCGGATC ACTTGAGGTC chr6:90358134-90358234 + 68 5.41e-10 ccaactactc gtgaggctgaggctggagaatt gcttgaaccc chr19:11565571-11565671 - 19 1.11e-08 CCAGCACTTT GGAAGGCTAAGATGTGAGGATC ACTTAAGGCC chr15:90664556-90664656 + 69 1.31e-08 ccagctaccc tggaggcctaggcggggagatc gcttgagcct chr22:19144280-19144380 - 78 3.32e-08 A GGAAGCGCGAGGCGGGAGAGGC TGGGGCTGCG chr21:32278598-32278698 - 3 2.01e-07 GGCCGACATG GAGAGGGCGCAGCTGGAGGAGG AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:55996366-55996466 3.4e-14 14_[-2]_64 chr3:49429270-49429370 2.2e-13 49_[-2]_29 chr6:28790326-28790426 2.2e-13 16_[+2]_62 chr1:155308093-155308193 9.4e-13 11_[-2]_67 chr1:108876296-108876396 1.9e-12 10_[-2]_68 chr6:30497046-30497146 1.9e-12 52_[+2]_26 chr1:182790508-182790608 3.4e-12 38_[-2]_40 chr17:28873349-28873449 4e-12 52_[+2]_26 chr6:27389298-27389398 4e-12 71_[+2]_7 chr8:144767177-144767277 4e-12 73_[-2]_5 chr2:218287968-218288068 4e-12 18_[+2]_60 chr1:146039380-146039480 5.1e-12 76_[+2]_2 chr5:154648813-154648913 1.3e-11 24_[+2]_54 chr15:56352093-56352193 1.4e-11 54_[-2]_24 chr1:52833785-52833885 2e-11 11_[+2]_67 chr1:99768723-99768823 2.2e-11 65_[+2]_13 chr12:111638037-11163813 3.9e-11 29_[+2]_49 chr3:5563809-5563909 3.9e-11 75_[+2]_3 chr11:47939650-47939750 4.8e-11 73_[+2]_5 chr3:45859100-45859200 5.3e-11 28_[-2]_50 chr4:24584774-24584874 6.4e-11 63_[+2]_15 chr17:44017775-44017875 6.4e-11 42_[+2]_36 chr5:39004660-39004760 6.4e-11 24_[-2]_54 chr5:32369490-32369590 1.1e-10 14_[+2]_64 chr20:32744692-32744792 1.6e-10 52_[+2]_26 chr17:75204715-75204815 2.4e-10 36_[-2]_42 chr1:230983905-230984005 2.4e-10 37_[+2]_41 chr3:172541139-172541239 2.6e-10 18_[-2]_60 chr7:6448235-6448335 4.6e-10 10_[-2]_68 chr6:90358134-90358234 5.4e-10 67_[+2]_11 chr19:11565571-11565671 1.1e-08 18_[-2]_60 chr15:90664556-90664656 1.3e-08 68_[+2]_10 chr22:19144280-19144380 3.3e-08 77_[-2]_1 chr21:32278598-32278698 2e-07 2_[-2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAGGCYGAGGCRGGAGRATC width=22 seqs=34 chr12:55996366-55996466 ( 15) GGGAGGCTGAGGCGGGAGGATC 1 chr3:49429270-49429370 ( 50) GGGAGGCTGAGGCAGGAGAATC 1 chr6:28790326-28790426 ( 17) GGGAGGCTGAGGCAGGAGAATC 1 chr1:155308093-155308193 ( 12) GGGAGGCCGAGGCGGGTGGATC 1 chr1:108876296-108876396 ( 11) AGGAGGCTGAGGCAGGAGAATC 1 chr6:30497046-30497146 ( 53) AGGAGGCTGAGGCAGGAGAATC 1 chr1:182790508-182790608 ( 39) GGGAGGCTGAGGCAGGAGAATG 1 chr17:28873349-28873449 ( 53) GGGAGGCTGAGGCAGGTGGATT 1 chr6:27389298-27389398 ( 72) GGGAGGCCAAGGCGGGCGGATC 1 chr8:144767177-144767277 ( 74) TGGAGGCTGAGGCAGGAGGATC 1 chr2:218287968-218288068 ( 19) GGGAGGCCAAGGCGGGCGGATC 1 chr1:146039380-146039480 ( 77) GGGAGGCCGAGGTGGGCGGATC 1 chr5:154648813-154648913 ( 25) GGGAGGCCGAAGCGGGCGGATC 1 chr15:56352093-56352193 ( 55) GGAAGGCTGAGGCAGGAGAATT 1 chr1:52833785-52833885 ( 12) GGGAGGCCAAGGCGGGCGGATT 1 chr1:99768723-99768823 ( 66) AGGAGGCTGAGGCAGGAGAATG 1 chr12:111638037-11163813 ( 30) GGGAGGCCAAGGTGGGTGGATC 1 chr3:5563809-5563909 ( 76) GGGAGGCCAAGGTGGGTGGATC 1 chr11:47939650-47939750 ( 74) AGGAGGCTAAGGCAGGAGAATT 1 chr3:45859100-45859200 ( 29) GGGAGGGTGCGGCAGGAGGATC 1 chr4:24584774-24584874 ( 64) GGGAGACCGAGGCGGGTGGATC 1 chr17:44017775-44017875 ( 43) AGGAGGCTGAGGCAGAAGGATC 1 chr5:39004660-39004760 ( 25) GGGAGGCTGAAGCAGGGGAATC 1 chr5:32369490-32369590 ( 15) GGGAGGCTGAGTTAGGAGAATC 1 chr20:32744692-32744792 ( 53) CGGAGGCTGAGGCAAGAGGATC 1 chr17:75204715-75204815 ( 37) GGAAGGCTGAGGCAAGAGAATT 1 chr1:230983905-230984005 ( 38) AGGAGGTTGAGGTGGGAGGATC 1 chr3:172541139-172541239 ( 19) GGAAGGCTGAGGCGGGCGGGTT 1 chr7:6448235-6448335 ( 11) GAGAGGCCCAGGCGGGCGGATC 1 chr6:90358134-90358234 ( 68) GTGAGGCTGAGGCTGGAGAATT 1 chr19:11565571-11565671 ( 19) GGAAGGCTAAGATGTGAGGATC 1 chr15:90664556-90664656 ( 69) TGGAGGCCTAGGCGGGGAGATC 1 chr22:19144280-19144380 ( 78) GGAAGCGCGAGGCGGGAGAGGC 1 chr21:32278598-32278698 ( 3) GAGAGGGCGCAGCTGGAGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.462 E= 1.3e-135 -57 -302 163 -215 -215 -1173 194 -315 -83 -1173 184 -1173 193 -1173 -1173 -1173 -1173 -1173 207 -1173 -315 -302 198 -1173 -1173 189 -143 -315 -1173 68 -1173 124 -35 -302 163 -315 185 -202 -1173 -1173 -157 -1173 194 -1173 -315 -1173 198 -315 -1173 179 -1173 -57 85 -1173 98 -215 -215 -1173 194 -315 -315 -1173 203 -1173 117 -21 -202 -83 -315 -1173 203 -1173 55 -1173 137 -1173 185 -1173 -202 -1173 -1173 -1173 -202 185 -1173 157 -143 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 34 E= 1.3e-135 0.176471 0.029412 0.735294 0.058824 0.058824 0.000000 0.911765 0.029412 0.147059 0.000000 0.852941 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.029412 0.029412 0.941176 0.000000 0.000000 0.882353 0.088235 0.029412 0.000000 0.382353 0.000000 0.617647 0.205882 0.029412 0.735294 0.029412 0.941176 0.058824 0.000000 0.000000 0.088235 0.000000 0.911765 0.000000 0.029412 0.000000 0.941176 0.029412 0.000000 0.823529 0.000000 0.176471 0.470588 0.000000 0.470588 0.058824 0.058824 0.000000 0.911765 0.029412 0.029412 0.000000 0.970588 0.000000 0.588235 0.205882 0.058824 0.147059 0.029412 0.000000 0.970588 0.000000 0.382353 0.000000 0.617647 0.000000 0.941176 0.000000 0.058824 0.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.705882 0.088235 0.205882 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCYGAGGCRGGAGRATC MEME-2 regular expression -------------------------------------------------------------------------------- GGGAGGC[TC][GA]AGGC[AG]GG[AC]G[GA]AT[CT] -------------------------------------------------------------------------------- Time 674.39 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 width = 24 sites = 29 llr = 663 E-value = 2.0e-121 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::13:21::::3:812:::1:98: pos.-specific C 118:4:::::9:8:6:a9:::::: probability G 99:6:89:aa:212:7::18:12: matrix T ::216::a::161:4::19:a::a bits 2.1 * * 1.9 *** * * 1.7 * ***** * * ** * 1.4 ** ***** *** ** * Relative 1.2 ** ***** * ******** Entropy 1.0 *** ****** ** ********* (33.0 bits) 0.8 **** ****** ************ 0.6 ************************ 0.4 ************************ 0.2 ************************ 0.0 ------------------------ Multilevel GGCGTGGTGGCTCACGCCTGTAAT consensus AC A TA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chr1:146039380-146039480 + 42 4.94e-15 ATCTGggccg ggcgcggtggctcacgcctgtaat cccagtactt chr1:155308093-155308193 - 45 1.84e-14 TCTTGGGCCG GGCACGGTGGCTCACGCCTGTAAT CCCAGCACTT chr1:200510728-200510828 + 68 1.84e-14 GTCCTGCcca ggcacggtggctcacgcctgtaat cccagcact chr17:28873349-28873449 + 18 2.39e-14 TAGTGggcca ggcatggtggctcatgcctgtaat cccagcactt chr5:39004660-39004760 - 58 3.20e-14 AAATTAGCTG GGCGTGGTGGCACATGCCTGTAAT CCCAGCTACT chr6:30497046-30497146 + 18 6.27e-14 aaattagctg ggcgtggtggcgcatgcctgtaat cctagctact chr6:90358134-90358234 + 33 7.95e-14 aaattagccg ggcatggtggcacatgcctgtaat cccaactact chr6:27389298-27389398 + 37 9.24e-14 tgcTTggccg ggcgcagtggctcacgcctgtaat cccagcactt chr6:28809253-28809353 + 64 2.31e-13 CTTGAAgcca ggagtggtggctcacgcctgtaat cccagcactt chr7:6448235-6448335 - 44 2.11e-12 AACAGGGCCG GGCGCAGTGGTTCACGCCTGTAAT CCTAGCACTT chr17:75204715-75204815 - 70 2.62e-12 TTAGACG GGCGTGGTGGCGGACACCTGTAAT TCCAGCTACT chr1:25861482-25861582 + 56 4.47e-12 TTGTCggcca ggcgcagtggctcatgccggtaat cccagcactt chr9:123340873-123340973 - 24 5.51e-12 GTTGAGGCCG GGCAAAGTGGCTCACGCCTGTAAT CCCAGCACTT chr15:44887764-44887864 - 17 1.00e-11 TTTTTGGCTG GGCACGGTAGCTCACACCTGTAAT CCCAACACTT chr1:99768723-99768823 + 31 1.22e-11 aaattcgcca gatgtggtggcacacgcctgtaat cccagctact chr21:42972454-42972554 - 29 1.22e-11 AAATTAAGCA GGCGTGGTGGCATACACCTGTAGT CCCAGCTACT chr20:37941957-37942057 + 48 1.79e-11 tggatggctg ggcatggtggcttacacctataat cctggcactt chr3:172541139-172541239 - 52 4.00e-11 ATCCTGGCCA GGCACAGTGGCTCACACATGTAAT CCCAGCACTT chr4:24584774-24584874 + 29 5.62e-11 AGTGAGGggc cgcgcgatggttcacgcctgtaat cccaacgctt chr1:108876296-108876396 - 44 5.62e-11 AAATTAGCTG GGAGTGGTGGCGCATGCCTTTAAT CCCAGCTACT chr1:182790508-182790608 - 72 1.08e-10 AGCCG GGCGTGGTGGCGGGAGCCTGTAGT CCCAGCTACT chr15:90664556-90664656 + 34 1.08e-10 aaaatagcca ggtgtggtggcacgtgcctgtggt cccagctacc chr3:5563809-5563909 + 41 1.47e-10 tgaggggccg ggtgcggtggctcgtgctggtaat cccagcattt chr19:11565571-11565671 - 52 1.84e-10 CTCAGGGTAA GGTGTGGTGGCTCATACTTGCAAT CCCAGCACTT chr12:55996366-55996466 - 47 2.14e-10 TAATAATCGC CCCTTGGTGGCACACGCCTGTAGT CCCAGTACTC chr17:44017775-44017875 + 8 4.07e-10 ttagctg ggcatggtggcgggagcctgtgat cccaactatt chr11:47939650-47939750 + 39 1.32e-09 aaattggcca ggcttggtggcacactcttatagt cccagctact chr3:45859100-45859200 - 62 9.98e-09 AAAATAGTCA GGCACCATGGCTAGTGCCTATAGT CCCAGCTACT chr19:55038520-55038620 - 6 6.16e-08 CAAAAATTAG CCTGGTGTGGTACATACCTATAAT CCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:146039380-146039480 4.9e-15 41_[+3]_35 chr1:155308093-155308193 1.8e-14 44_[-3]_32 chr1:200510728-200510828 1.8e-14 67_[+3]_9 chr17:28873349-28873449 2.4e-14 17_[+3]_59 chr5:39004660-39004760 3.2e-14 57_[-3]_19 chr6:30497046-30497146 6.3e-14 17_[+3]_59 chr6:90358134-90358234 7.9e-14 32_[+3]_44 chr6:27389298-27389398 9.2e-14 36_[+3]_40 chr6:28809253-28809353 2.3e-13 63_[+3]_13 chr7:6448235-6448335 2.1e-12 43_[-3]_33 chr17:75204715-75204815 2.6e-12 69_[-3]_7 chr1:25861482-25861582 4.5e-12 55_[+3]_21 chr9:123340873-123340973 5.5e-12 23_[-3]_53 chr15:44887764-44887864 1e-11 16_[-3]_60 chr1:99768723-99768823 1.2e-11 30_[+3]_46 chr21:42972454-42972554 1.2e-11 28_[-3]_48 chr20:37941957-37942057 1.8e-11 47_[+3]_29 chr3:172541139-172541239 4e-11 51_[-3]_25 chr4:24584774-24584874 5.6e-11 28_[+3]_48 chr1:108876296-108876396 5.6e-11 43_[-3]_33 chr1:182790508-182790608 1.1e-10 71_[-3]_5 chr15:90664556-90664656 1.1e-10 33_[+3]_43 chr3:5563809-5563909 1.5e-10 40_[+3]_36 chr19:11565571-11565671 1.8e-10 51_[-3]_25 chr12:55996366-55996466 2.1e-10 46_[-3]_30 chr17:44017775-44017875 4.1e-10 7_[+3]_69 chr11:47939650-47939750 1.3e-09 38_[+3]_38 chr3:45859100-45859200 1e-08 61_[-3]_15 chr19:55038520-55038620 6.2e-08 5_[-3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCRYGGTGGCWCAYGCCTGTAAT width=24 seqs=29 chr1:146039380-146039480 ( 42) GGCGCGGTGGCTCACGCCTGTAAT 1 chr1:155308093-155308193 ( 45) GGCACGGTGGCTCACGCCTGTAAT 1 chr1:200510728-200510828 ( 68) GGCACGGTGGCTCACGCCTGTAAT 1 chr17:28873349-28873449 ( 18) GGCATGGTGGCTCATGCCTGTAAT 1 chr5:39004660-39004760 ( 58) GGCGTGGTGGCACATGCCTGTAAT 1 chr6:30497046-30497146 ( 18) GGCGTGGTGGCGCATGCCTGTAAT 1 chr6:90358134-90358234 ( 33) GGCATGGTGGCACATGCCTGTAAT 1 chr6:27389298-27389398 ( 37) GGCGCAGTGGCTCACGCCTGTAAT 1 chr6:28809253-28809353 ( 64) GGAGTGGTGGCTCACGCCTGTAAT 1 chr7:6448235-6448335 ( 44) GGCGCAGTGGTTCACGCCTGTAAT 1 chr17:75204715-75204815 ( 70) GGCGTGGTGGCGGACACCTGTAAT 1 chr1:25861482-25861582 ( 56) GGCGCAGTGGCTCATGCCGGTAAT 1 chr9:123340873-123340973 ( 24) GGCAAAGTGGCTCACGCCTGTAAT 1 chr15:44887764-44887864 ( 17) GGCACGGTAGCTCACACCTGTAAT 1 chr1:99768723-99768823 ( 31) GATGTGGTGGCACACGCCTGTAAT 1 chr21:42972454-42972554 ( 29) GGCGTGGTGGCATACACCTGTAGT 1 chr20:37941957-37942057 ( 48) GGCATGGTGGCTTACACCTATAAT 1 chr3:172541139-172541239 ( 52) GGCACAGTGGCTCACACATGTAAT 1 chr4:24584774-24584874 ( 29) CGCGCGATGGTTCACGCCTGTAAT 1 chr1:108876296-108876396 ( 44) GGAGTGGTGGCGCATGCCTTTAAT 1 chr1:182790508-182790608 ( 72) GGCGTGGTGGCGGGAGCCTGTAGT 1 chr15:90664556-90664656 ( 34) GGTGTGGTGGCACGTGCCTGTGGT 1 chr3:5563809-5563909 ( 41) GGTGCGGTGGCTCGTGCTGGTAAT 1 chr19:11565571-11565671 ( 52) GGTGTGGTGGCTCATACTTGCAAT 1 chr12:55996366-55996466 ( 47) CCCTTGGTGGCACACGCCTGTAGT 1 chr17:44017775-44017875 ( 8) GGCATGGTGGCGGGAGCCTGTGAT 1 chr11:47939650-47939750 ( 39) GGCTTGGTGGCACACTCTTATAGT 1 chr3:45859100-45859200 ( 62) GGCACCATGGCTAGTGCCTATAGT 1 chr19:55038520-55038620 ( 6) CCTGGTGTGGTACATACCTATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 46200 bayes= 12.3254 E= 2.0e-121 -1150 -120 191 -1150 -292 -179 191 -1150 -192 167 -1150 -60 40 -1150 130 -192 -292 67 -279 108 -60 -279 167 -292 -192 -1150 197 -1150 -1150 -1150 -1150 193 -292 -1150 202 -1150 -1150 -1150 207 -1150 -1150 191 -1150 -134 8 -1150 -47 108 -292 173 -120 -192 166 -1150 -47 -1150 -192 121 -1150 54 -12 -1150 160 -292 -1150 207 -1150 -1150 -292 185 -1150 -134 -1150 -1150 -179 183 -92 -1150 180 -292 -1150 -279 -1150 188 183 -1150 -179 -1150 160 -1150 -20 -1150 -1150 -1150 -1150 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 29 E= 2.0e-121 0.000000 0.103448 0.896552 0.000000 0.034483 0.068966 0.896552 0.000000 0.068966 0.758621 0.000000 0.172414 0.344828 0.000000 0.586207 0.068966 0.034483 0.379310 0.034483 0.551724 0.172414 0.034483 0.758621 0.034483 0.068966 0.000000 0.931034 0.000000 0.000000 0.000000 0.000000 1.000000 0.034483 0.000000 0.965517 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.896552 0.000000 0.103448 0.275862 0.000000 0.172414 0.551724 0.034483 0.793103 0.103448 0.068966 0.827586 0.000000 0.172414 0.000000 0.068966 0.551724 0.000000 0.379310 0.241379 0.000000 0.724138 0.034483 0.000000 1.000000 0.000000 0.000000 0.034483 0.862069 0.000000 0.103448 0.000000 0.000000 0.068966 0.931034 0.137931 0.000000 0.827586 0.034483 0.000000 0.034483 0.000000 0.965517 0.931034 0.000000 0.068966 0.000000 0.793103 0.000000 0.206897 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRYGGTGGCWCAYGCCTGTAAT MEME-3 regular expression -------------------------------------------------------------------------------- GGC[GA][TC]GGTGGC[TA]CA[CT][GA]CCTGTA[AG]T -------------------------------------------------------------------------------- Time 961.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:78629174-78629274 4.75e-01 100 chr3:178048652-178048752 1.47e-01 100 chr22:22122645-22122745 7.44e-02 100 chr15:20310576-20310676 3.09e-01 100 chr1:27518086-27518186 4.96e-01 100 chr4:79209926-79210026 5.03e-02 100 chr18:34978996-34979096 5.18e-01 100 chr6:166466724-166466824 1.60e-05 41_[+1(1.05e-07)]_16_[+1(4.07e-09)]_\ 3 chr1:1013041-1013141 7.00e-01 100 chr11:93407761-93407861 2.37e-03 54_[-3(1.12e-05)]_22 chr16:72111614-72111714 4.00e-01 100 chr8:8698307-8698407 2.35e-05 56_[+1(7.94e-09)]_24 chr9:87516256-87516356 3.72e-01 100 chr20:38692604-38692704 7.05e-01 100 chr4:8522514-8522614 3.85e-04 4_[-1(1.80e-07)]_76 chr17:15978588-15978688 2.14e-01 100 chr6:13701070-13701170 6.60e-01 100 chr1:211197999-211198099 3.84e-02 12_[-1(1.82e-05)]_68 chr10:61830865-61830965 1.47e-01 100 chr16:58518048-58518148 3.53e-01 100 chr10:91608900-91609000 2.87e-01 100 chr8:53727860-53727960 2.76e-01 100 chr1:22246268-22246368 5.48e-01 100 chr9:120580248-120580348 5.65e-01 100 chr6:4402238-4402338 1.13e-07 63_[+1(1.60e-10)]_17 chr7:74515134-74515234 4.49e-01 100 chr9:73153729-73153829 5.17e-03 67_[+2(6.19e-05)]_11 chr9:128656590-128656690 3.57e-01 100 chr5:98986563-98986663 6.84e-02 100 chr1:156944226-156944326 1.33e-08 23_[+1(1.44e-12)]_57 chr1:15260413-15260513 2.26e-01 100 chr7:143370859-143370959 2.24e-05 22_[+1(2.50e-09)]_58 chr7:103996014-103996114 1.77e-01 100 chr11:59537508-59537608 4.55e-01 100 chr19:49761655-49761755 5.56e-01 100 chr16:85377330-85377430 3.29e-01 100 chr12:104286932-10428703 3.69e-01 100 chr5:18800507-18800607 9.66e-01 100 chr12:54360803-54360903 5.52e-01 100 chr5:90691557-90691657 2.27e-08 14_[+1(1.44e-12)]_66 chr11:67906924-67907024 7.94e-01 100 chr9:35914059-35914159 9.04e-01 100 chr5:180562532-180562632 6.37e-01 100 chr1:221714211-221714311 4.72e-01 100 chr15:89075208-89075308 1.70e-01 100 chr12:55817067-55817167 1.18e-01 100 chr17:47190755-47190855 4.50e-01 100 chr6:83867492-83867592 2.10e-01 100 chr18:1664028-1664128 7.87e-01 100 chr13:113850836-11385093 2.99e-06 24_[-1(2.50e-09)]_24_[-1(4.92e-09)]_\ 12 chr6:41202675-41202775 4.19e-01 100 chr2:157837536-157837636 1.41e-01 100 chr20:2431058-2431158 1.74e-05 14_[+1(3.03e-08)]_24_[+1(2.50e-09)]_\ 22 chr11:76314046-76314146 6.39e-01 100 chr11:66637971-66638071 2.99e-01 100 chr1:20195088-20195188 3.19e-01 100 chr1:195720875-195720975 9.78e-03 [-1(4.94e-05)]_80 chr5:39004660-39004760 1.44e-17 24_[-2(6.42e-11)]_11_[-3(3.20e-14)]_\ 19 chr22:16534571-16534671 3.52e-02 100 chr7:158782067-158782167 6.30e-02 40_[-1(4.46e-05)]_40 chr14:90931886-90931986 4.63e-09 31_[+1(1.44e-12)]_49 chr14:68483740-68483840 4.26e-01 100 chr21:43322784-43322884 3.01e-04 70_[-1(5.04e-08)]_10 chr1:156444583-156444683 8.51e-01 100 chr17:33410803-33410903 8.07e-05 79_[-1(4.26e-08)]_1 chr3:5023366-5023466 9.47e-01 100 chr12:989734-989834 4.88e-02 100 chr1:7364593-7364693 6.72e-08 77_[-1(2.74e-12)]_3 chr16:25771681-25771781 3.53e-01 100 chr12:45991744-45991844 2.42e-01 100 chr17:21354764-21354864 1.60e-09 1_[-1(1.44e-12)]_79 chr20:53750701-53750801 1.08e-04 52_[-1(1.43e-07)]_28 chrUn_KI270742v1:103822- 5.86e-01 100 chr7:127384176-127384276 9.14e-01 100 chr20:37850611-37850711 9.80e-02 100 chr7:101556343-101556443 2.41e-05 13_[-1(1.26e-08)]_24_[-1(5.86e-07)]_\ 23 chr16:4299766-4299866 1.75e-01 100 chr6:108562543-108562643 4.50e-02 100 chr1:23530190-23530290 1.16e-01 100 chr15:56352093-56352193 9.33e-08 54_[-2(1.43e-11)]_24 chr6:137909569-137909669 7.86e-04 10_[-1(5.74e-05)]_3_[+2(7.44e-06)]_\ 45 chr17:27323789-27323889 7.88e-06 47_[+1(3.37e-09)]_[+1(4.09e-07)]_13 chr11:91906089-91906189 6.46e-01 100 chr4:139443634-139443734 2.89e-01 100 chr6:31735878-31735978 1.38e-01 100 chr19:48891739-48891839 7.22e-01 100 chr21:33229343-33229443 6.84e-06 56_[+1(4.51e-09)]_24 chr7:150312744-150312844 4.17e-01 100 chr3:105614251-105614351 8.77e-01 100 chr17:58679214-58679314 8.59e-01 100 chr20:36083074-36083174 3.03e-01 100 chr19:12784240-12784340 8.44e-01 100 chr9:112174299-112174399 7.93e-01 100 chr12:108239980-10824008 6.09e-05 48_[-1(2.14e-08)]_32 chr17:57864835-57864935 3.50e-08 26_[-1(1.44e-12)]_54 chr3:40681128-40681228 1.09e-03 27_[-1(9.22e-06)]_53 chr11:33944780-33944880 6.07e-02 100 chr16_KI270728v1_random: 7.80e-02 100 chr17:45383894-45383994 1.00e-08 35_[+1(1.44e-12)]_[+1(2.00e-11)]_25 chr1:116131912-116132012 2.94e-01 100 chr2:200306084-200306184 1.72e-01 100 chr2:215831497-215831597 2.94e-01 100 chr2:165891305-165891405 3.15e-08 69_[+1(1.44e-12)]_11 chr3:150038956-150039056 2.58e-02 2_[+1(1.54e-05)]_78 chrX:2828143-2828243 4.79e-04 26_[+1(5.46e-07)]_4_[+1(8.49e-05)]_\ 30 chr16:26969484-26969584 6.99e-02 100 chr19:57279562-57279662 9.07e-01 100 chr9:133734122-133734222 6.47e-08 16_[+1(2.74e-12)]_[+1(2.74e-12)]_24_\ [+1(2.74e-12)] chr1:21591180-21591280 1.45e-01 100 chr15:67900626-67900726 7.44e-01 100 chr15:66566187-66566287 3.74e-06 8_[+1(7.19e-09)]_72 chr7:107018301-107018401 4.53e-02 5_[-1(2.51e-05)]_75 chr12:96215138-96215238 7.66e-01 100 chr1:23214145-23214245 4.55e-06 78_[+1(3.58e-10)]_2 chr8:127918593-127918693 3.83e-01 100 chr19:17482805-17482905 6.34e-08 4_[-1(2.54e-11)]_[-1(7.94e-09)]_20_\ [-1(2.24e-10)]_16 chr19:48549290-48549390 3.94e-02 6_[+1(5.74e-05)]_74 chr2:218287968-218288068 3.43e-08 18_[+2(3.98e-12)]_60 chr15:50355143-50355243 3.88e-01 100 chr3:37824347-37824447 9.30e-01 100 chr7:128734804-128734904 5.64e-01 100 chr1:18414764-18414864 1.27e-02 3_[+1(6.34e-05)]_77 chr9:99103147-99103247 6.50e-01 100 chr4:709163-709263 6.25e-05 20_[-1(4.09e-07)]_16_[-1(5.47e-08)]_\ 24 chr6:42201308-42201408 8.15e-02 100 chr11:65711857-65711957 6.53e-01 100 chr20:32621353-32621453 7.82e-07 20_[+1(4.92e-09)]_60 chr16:8562530-8562630 2.15e-06 39_[-1(1.08e-09)]_4_[-1(3.37e-09)]_\ 17 chr5:91291932-91292032 4.57e-01 100 chr10:71587062-71587162 7.23e-07 80_[+1(1.60e-10)] chr19:49478822-49478922 2.80e-02 40_[-2(6.52e-05)]_38 chr7:130913223-130913323 1.07e-01 100 chr11:62369061-62369161 3.08e-01 100 chr1:27040906-27041006 2.03e-05 21_[-1(4.51e-09)]_59 chr1:65254874-65254974 4.41e-05 73_[+1(1.95e-07)]_7 chr7:146057780-146057880 4.02e-01 100 chr20:49812058-49812158 8.75e-02 54_[-1(6.66e-05)]_26 chr6:108576118-108576218 8.10e-01 100 chr1:212858726-212858826 8.61e-02 100 chr20:31993341-31993441 1.11e-04 28_[+1(4.70e-05)]_14_[+1(3.06e-07)]_\ 18 chr3:170330939-170331039 2.38e-02 40_[-1(2.65e-05)]_40 chr19:13774243-13774343 3.63e-01 100 chr6:30497046-30497146 6.67e-19 17_[+3(6.27e-14)]_11_[+2(1.93e-12)]_\ 26 chr5:43212343-43212443 1.25e-04 20_[+1(1.43e-07)]_60 chr18:50262964-50263064 4.53e-01 100 chr1:234867251-234867351 7.78e-01 100 chr4:173021777-173021877 9.50e-05 53_[-1(2.14e-08)]_[-1(2.14e-08)]_7 chr15:55279475-55279575 3.57e-01 100 chr2:159265110-159265210 3.35e-01 100 chr1:161611697-161611797 7.83e-01 100 chr4:78606472-78606572 5.82e-10 4_[-1(1.44e-12)]_20_[-2(8.69e-05)]_\ 34 chr13:99434327-99434427 1.93e-01 100 chr6:41201211-41201311 2.01e-01 100 chr9:123340873-123340973 9.03e-12 23_[-3(5.51e-12)]_7_[+1(1.45e-05)]_\ [+1(4.73e-07)]_6 chr10:102854073-10285417 5.19e-01 100 chr19:55038520-55038620 3.35e-04 5_[-3(6.16e-08)]_71 chr20:41118087-41118187 2.27e-01 100 chr10:42519732-42519832 5.39e-01 100 chr10:73782392-73782492 4.25e-01 100 chr14:100285974-10028607 1.76e-09 28_[+1(5.35e-12)]_9_[-2(4.99e-05)]_\ 21 chr1:236568316-236568416 4.27e-01 100 chr8:90197285-90197385 2.68e-02 49_[-3(4.38e-05)]_27 chr3:5023128-5023228 5.33e-01 100 chr5:169636623-169636723 1.63e-01 100 chr9:98575496-98575596 8.71e-01 100 chr10:23047313-23047413 5.01e-01 100 chr6:157534081-157534181 7.89e-01 100 chr17:76121177-76121277 1.97e-01 100 chr1:63812240-63812340 1.33e-08 71_[-1(1.44e-12)]_9 chr1:31954560-31954660 1.15e-02 39_[+2(1.81e-05)]_39 chr12:121124693-12112479 2.83e-04 18_[+1(2.44e-07)]_3_[+1(1.72e-05)]_\ 39 chr3:5563809-5563909 2.20e-14 40_[+3(1.47e-10)]_11_[+2(3.93e-11)]_\ 3 chr6:42028509-42028609 7.96e-02 100 chr6:137612669-137612769 1.47e-03 32_[+1(2.27e-07)]_48 chr6:158820119-158820219 4.80e-01 100 chr6:137313096-137313196 4.80e-02 57_[-2(7.84e-05)]_21 chr15:70447670-70447770 3.17e-01 100 chr1:167869404-167869504 6.35e-01 100 chr1:25037182-25037282 1.48e-02 48_[-1(7.00e-05)]_32 chr17:20059714-20059814 6.19e-01 100 chr21:42972454-42972554 1.12e-07 28_[-3(1.22e-11)]_48 chr12:108110794-10811089 1.77e-06 54_[+1(5.10e-10)]_[+1(4.26e-08)]_6 chr2:95037011-95037111 1.40e-05 23_[-1(1.38e-08)]_[-1(5.46e-07)]_\ [-1(9.53e-07)]_17 chr10:3766833-3766933 4.26e-01 100 chr10:35635409-35635509 4.69e-02 100 chr2:11968022-11968122 7.77e-01 100 chr17:73310502-73310602 7.17e-02 100 chr19:55580873-55580973 4.32e-04 79_[+1(5.08e-07)]_1 chr11:47939650-47939750 6.94e-13 38_[+3(1.32e-09)]_11_[+2(4.82e-11)]_\ 5 chr11:33936007-33936107 1.07e-01 100 chr2:98086572-98086672 1.44e-06 60_[+1(1.07e-10)]_20 chr4:6727867-6727967 5.45e-03 73_[-1(8.21e-06)]_7 chr12:92556965-92557065 5.22e-01 100 chr7:117282145-117282245 6.11e-02 100 chr12:75837646-75837746 5.19e-01 100 chr19:415169-415269 1.97e-03 39_[-1(7.75e-07)]_18_[-1(6.34e-05)]_\ 3 chrX:38653060-38653160 1.20e-01 100 chr1:200510728-200510828 7.18e-16 27_[-1(2.02e-09)]_20_[+3(1.84e-14)]_\ 9 chr14:100451866-10045196 1.87e-07 14_[+1(1.50e-08)]_35_[+1(3.18e-11)]_\ 11 chr2:15253862-15253962 8.74e-02 18_[+1(4.46e-05)]_62 chr1:21687867-21687967 4.78e-01 100 chr4:76948630-76948730 3.64e-02 2_[-2(8.92e-05)]_76 chr16:82051040-82051140 2.33e-05 39_[-1(1.80e-07)]_41 chr16:20681721-20681821 7.01e-01 100 chr1:156689612-156689712 7.66e-03 1_[+2(4.99e-05)]_77 chr6:28893102-28893202 4.19e-02 80_[-1(5.46e-05)] chr12:50204450-50204550 8.89e-01 100 chr6:108578523-108578623 2.57e-02 100 chr15:90664556-90664656 7.86e-12 33_[+3(1.08e-10)]_11_[+2(1.31e-08)]_\ 10 chr22:40037832-40037932 9.94e-08 1_[+1(1.61e-11)]_79 chr14:103378016-10337811 6.18e-02 100 chr3:13650442-13650542 2.49e-01 100 chr3:157532437-157532537 8.72e-02 34_[+1(8.09e-05)]_46 chr7:50335171-50335271 1.11e-01 100 chr1_KI270709v1_random:4 2.62e-01 100 chr22:16624231-16624331 5.67e-01 100 chr3:172541139-172541239 1.53e-13 18_[-2(2.62e-10)]_11_[-3(4.00e-11)]_\ 25 chr3:37974623-37974723 5.06e-01 100 chr12:117938011-11793811 5.72e-01 100 chr2:27871697-27871797 6.62e-01 100 chr19:11832164-11832264 5.24e-01 100 chr6:152983812-152983912 7.34e-01 100 chr10:11845757-11845857 3.65e-08 5_[+1(7.96e-12)]_[+1(2.75e-09)]_55 chr17:8057583-8057683 3.62e-01 100 chr1:173248255-173248355 2.98e-04 20_[-1(7.00e-08)]_18_[-1(1.86e-06)]_\ 22 chr18:2894241-2894341 6.34e-01 100 chr3:10263928-10264028 3.88e-01 100 chr22:19144280-19144380 2.04e-04 77_[-2(3.32e-08)]_1 chr19:3521123-3521223 3.60e-01 100 chr1:154353304-154353404 4.72e-01 100 chr1:28504835-28504935 1.91e-01 100 chr21:37085766-37085866 3.94e-01 100 chr18:34978085-34978185 1.64e-01 100 chr20:32744692-32744792 9.75e-10 18_[+3(9.38e-07)]_10_[+2(1.58e-10)]_\ 26 chr1:144551612-144551712 8.01e-01 100 chr19:4567502-4567602 8.06e-02 100 chr2:28583964-28584064 7.73e-02 34_[-1(4.70e-05)]_46 chr11:65504028-65504128 2.56e-02 100 chr2:70965060-70965160 2.73e-01 100 chr8:144767177-144767277 3.23e-08 73_[-2(3.98e-12)]_5 chr19:48354376-48354476 5.42e-01 100 chr1:61012155-61012255 6.10e-01 100 chr7:95549700-95549800 3.78e-01 100 chr4:8350625-8350725 7.93e-01 100 chr20:38278578-38278678 3.24e-08 52_[+1(1.44e-12)]_28 chr6:136236016-136236116 8.91e-03 3_[-1(2.51e-05)]_77 chrX:153333626-153333726 5.28e-06 54_[+1(1.05e-08)]_26 chr2:38283924-38284024 6.11e-02 100 chr1:10821314-10821414 2.49e-08 40_[+1(5.35e-12)]_40 chr10:96107676-96107776 4.20e-01 100 chr2:8737756-8737856 4.54e-01 100 chr10:51699461-51699561 1.55e-01 100 chr1:183702010-183702110 7.11e-01 100 chr19:3324446-3324546 7.04e-03 65_[+1(1.45e-05)]_15 chr2:165953887-165953987 3.25e-01 100 chr4:69309637-69309737 7.01e-01 100 chr3:99776912-99777012 2.08e-01 100 chr21:36828148-36828248 2.11e-08 18_[-1(1.44e-12)]_4_[-1(2.74e-12)]_\ 38 chr13:59461217-59461317 4.11e-01 100 chr1:166875265-166875365 7.13e-01 100 chr15:57732771-57732871 5.11e-01 100 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chr20:57452171-57452271 7.06e-02 1_[+2(5.87e-05)]_77 chr18:841777-841877 8.20e-01 100 chr2:207247151-207247251 7.80e-01 100 chr7:158865430-158865530 4.76e-01 100 chr18:9017565-9017665 5.82e-01 100 chr5:126971399-126971499 2.56e-01 100 chr1:154936291-154936391 2.42e-02 100 chr17:75204715-75204815 3.31e-15 36_[-2(2.41e-10)]_11_[-3(2.62e-12)]_\ 7 chr4:169823633-169823733 3.89e-01 100 chr16:80540533-80540633 1.40e-05 21_[-1(5.47e-08)]_59 chr3:182618230-182618330 4.27e-01 100 chr3:13024182-13024282 1.02e-04 [+1(5.46e-07)]_[+1(2.57e-06)]_4_\ [+1(1.99e-06)]_16_[+1(1.53e-06)] chr7:116417612-116417712 2.66e-01 100 chr7:72684051-72684151 2.67e-01 100 chr12:54931985-54932085 2.33e-01 100 chr4:168451698-168451798 2.84e-01 100 chr4:143405313-143405413 5.35e-05 66_[+1(2.55e-08)]_14 chr10:72888099-72888199 3.72e-01 100 chr18:56214789-56214889 5.42e-02 100 chr17:28873349-28873449 2.20e-18 17_[+3(2.39e-14)]_11_[+2(3.98e-12)]_\ 26 chr7:138527614-138527714 9.52e-01 100 chr1:41891569-41891669 1.17e-01 100 chr21:32278598-32278698 2.81e-04 2_[-2(2.01e-07)]_76 chr21:46188482-46188582 2.33e-02 47_[-1(7.35e-05)]_33 chr6:6881934-6882034 2.93e-07 75_[+1(5.75e-10)]_5 chr10:15344806-15344906 3.60e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya ********************************************************************************