# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 18169 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:43 PST 2017) # negatives: 18169 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZNF24-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:44 PST 2017) # host: surya # when: Wed Nov 22 13:00:09 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.233 C 0.267 G 0.268 T 0.232 MOTIF TGAABGAR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TGAABGAR YTCVTTCA 4715 704 4.6e-838 2.1e-833 # TGAATGAA TTCATTCA 3223 277 8.5e-693 3.8e-688 # TGAATGAG CTCATTCA 1108 167 1.9e-176 8.6e-172 # TGAACGAA TTCGTTCA 278 32 9.0e-051 4.1e-046 # TGAAGGAA TTCCTTCA 274 105 5.5e-019 2.5e-014 # TGAAGGAG CTCCTTCA 166 111 5.4e-004 2.5e+001 # TGAACGAG CTCGTTCA 45 23 5.1e-003 2.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 8045 E= 2.1e-833 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.037166 0.052828 0.910006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.821753 0.000000 0.178247 0.000000 MOTIF ATTHVTTC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATTHVTTC GAABDAAT 1365 408 2.4e-126 1.1e-121 # ATTTGTTC GAACAAAT 234 50 4.0e-030 1.8e-025 # ATTTCTTC GAAGAAAT 322 100 6.9e-029 3.1e-024 # ATTTATTC GAATAAAT 200 48 1.1e-023 5.0e-019 # ATTCATTC GAATGAAT 233 74 9.0e-021 4.1e-016 # ATTAATTC GAATTAAT 149 35 2.5e-018 1.1e-013 # ATTACTTC GAAGTAAT 101 31 3.5e-010 1.6e-005 # ATTCCTTC GAAGGAAT 103 40 6.5e-008 2.9e-003 # ATTCGTTC GAACGAAT 41 10 7.3e-006 3.3e-001 # ATTAGTTC GAACTAAT 60 29 6.6e-004 3.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1453 E= 1.1e-121 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.214040 0.252581 0.000000 0.533379 0.399174 0.367515 0.233310 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTTATCWS DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTTATCWS SWGATAAG 694 140 4.2e-091 1.9e-086 # CTTATCTG CAGATAAG 219 37 3.9e-033 1.8e-028 # CTTATCTC GAGATAAG 221 38 4.6e-033 2.1e-028 # CTTATCAG CTGATAAG 168 37 1.5e-021 6.9e-017 # CTTATCAC GTGATAAG 99 29 1.8e-010 8.1e-006 letter-probability matrix: alength= 4 w= 8 nsites= 717 E= 1.9e-086 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.375174 0.000000 0.000000 0.624826 0.000000 0.450488 0.549512 0.000000 MOTIF AGRKGGCG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCG CGCCMYCT 945 284 2.8e-086 1.3e-081 # AGGGGGCG CGCCCCCT 394 124 1.6e-034 7.4e-030 # AGGTGGCG CGCCACCT 202 44 7.9e-026 3.6e-021 # AGATGGCG CGCCATCT 134 23 1.3e-020 5.7e-016 # AGAGGGCG CGCCCTCT 239 94 3.9e-016 1.8e-011 letter-probability matrix: alength= 4 w= 8 nsites= 976 E= 1.3e-081 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.382172 0.000000 0.617828 0.000000 0.000000 0.000000 0.655738 0.344262 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RGGAAR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST RGGAAR YTTCCY 6025 4358 6.0e-084 2.7e-079 # AGGAAG CTTCCT 2130 1295 1.9e-051 8.7e-047 # AGGAAA TTTCCT 1713 1137 1.1e-029 4.9e-025 # GGGAAG CTTCCC 1932 1374 1.2e-024 5.3e-020 # GGGAAA TTTCCC 1341 1063 2.4e-009 1.1e-004 letter-probability matrix: alength= 4 w= 6 nsites= 7559 E= 2.7e-079 0.544649 0.000000 0.455351 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.421617 0.000000 0.578383 0.000000 MOTIF TBARTAAA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TBARTAAA TTTAYTVA 693 225 9.7e-058 4.3e-053 # TCAGTAAA TTTACTGA 163 24 5.3e-027 2.3e-022 # TCAATAAA TTTATTGA 193 43 2.6e-024 1.1e-019 # TGAATAAA TTTATTCA 145 55 6.8e-011 3.0e-006 # TGAGTAAA TTTACTCA 115 54 1.5e-006 6.6e-002 # TTAGTAAA TTTACTAA 47 12 2.5e-006 1.1e-001 # TTAATAAA TTTATTAA 65 40 9.3e-003 4.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 739 E= 4.3e-053 0.000000 0.000000 0.000000 1.000000 0.000000 0.487145 0.359946 0.152909 1.000000 0.000000 0.000000 0.000000 0.552097 0.000000 0.447903 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CVGCCKCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CVGCCKCC GGMGGCBG 1746 962 3.8e-056 1.7e-051 # CAGCCTCC GGAGGCTG 414 162 4.2e-027 1.9e-022 # CCGCCGCC GGCGGCGG 511 245 3.7e-023 1.7e-018 # CCGCCTCC GGAGGCGG 331 171 2.9e-013 1.3e-008 # CGGCCGCC GGCGGCCG 324 210 3.8e-007 1.7e-002 # CGGCCTCC GGAGGCCG 242 145 4.1e-007 1.8e-002 # CAGCCGCC GGCGGCTG 223 135 1.7e-006 7.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 2046 E= 1.7e-051 0.000000 1.000000 0.000000 0.000000 0.303519 0.420332 0.276149 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.518084 0.481916 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTGRCTCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GTGRCTCA TGAGYCAC 497 129 5.7e-053 2.5e-048 # GTGACTCA TGAGTCAC 250 59 1.2e-029 5.2e-025 # GTGGCTCA TGAGCCAC 247 70 8.8e-025 3.9e-020 letter-probability matrix: alength= 4 w= 8 nsites= 505 E= 2.5e-048 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.510891 0.000000 0.489109 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RYCTGTAA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST RYCTGTAA TTACAGRY 430 115 1.1e-044 5.0e-040 # GCCTGTAA TTACAGGC 196 33 7.4e-030 3.2e-025 # ATCTGTAA TTACAGAT 128 31 1.5e-015 6.5e-011 # ACCTGTAA TTACAGGT 55 26 8.3e-004 3.7e+001 # GTCTGTAA TTACAGAC 53 25 1.0e-003 4.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 432 E= 5.0e-040 0.423611 0.000000 0.576389 0.000000 0.000000 0.581019 0.000000 0.418981 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGATAAV DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGATAAV BTTATCT 790 367 1.6e-037 6.9e-033 # AGATAAG CTTATCT 209 70 1.2e-017 5.2e-013 # AGATAAC GTTATCT 229 90 1.5e-015 6.8e-011 # AGATAAA TTTATCT 375 212 5.9e-012 2.6e-007 letter-probability matrix: alength= 4 w= 7 nsites= 828 E= 6.9e-033 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.466184 0.277778 0.256039 0.000000 MOTIF DSCCAGGC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST DSCCAGGC GCCTGGSH 1444 838 7.9e-040 3.5e-035 # GCCCAGGC GCCTGGGC 388 193 1.3e-016 5.8e-012 # GGCCAGGC GCCTGGCC 325 174 4.8e-012 2.1e-007 # TGCCAGGC GCCTGGCA 227 132 2.7e-007 1.2e-002 # AGCCAGGC GCCTGGCT 239 160 4.1e-005 1.8e+000 # TCCCAGGC GCCTGGGA 148 88 5.4e-005 2.4e+000 # ACCCAGGC GCCTGGGT 179 121 4.6e-004 2.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1508 E= 3.5e-035 0.277188 0.000000 0.473475 0.249337 0.000000 0.472812 0.527188 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TRAGTSA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST TRAGTSA TSACTYA 1526 959 1.7e-032 7.5e-028 # TGAGTCA TGACTCA 517 268 9.1e-020 4.0e-015 # TGAGTGA TCACTCA 634 432 1.8e-010 8.1e-006 # TAAGTGA TCACTTA 281 160 3.6e-009 1.6e-004 # TAAGTCA TGACTTA 179 122 5.8e-004 2.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1801 E= 7.5e-028 0.000000 0.000000 0.000000 1.000000 0.257635 0.000000 0.742365 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.402554 0.597446 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTAGVTG DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AGTAGVTG CABCTACT 353 110 2.0e-031 9.0e-027 # AGTAGGTG CACCTACT 141 37 7.2e-016 3.2e-011 # AGTAGCTG CAGCTACT 141 41 2.1e-014 9.1e-010 # AGTAGATG CATCTACT 74 32 2.7e-005 1.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 359 E= 9.0e-027 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.211699 0.395543 0.392758 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GSHGGGA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GSHGGGA TCCCDSC 2518 1819 5.5e-030 2.4e-025 # GCTGGGA TCCCAGC 637 388 1.4e-015 6.4e-011 # GGAGGGA TCCCTCC 560 390 1.3e-008 5.6e-004 # GCAGGGA TCCCTGC 507 375 3.9e-006 1.7e-001 # GCCGGGA TCCCGGC 353 265 2.0e-004 9.0e+000 # GGCGGGA TCCCGCC 336 261 1.1e-003 4.9e+001 # GGTGGGA TCCCACC 334 270 4.8e-003 2.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 2776 E= 2.4e-025 0.000000 0.000000 1.000000 0.000000 0.000000 0.548631 0.451369 0.000000 0.391931 0.256124 0.000000 0.351945 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRCWGC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CRCWGC GCWGYG 5041 4170 4.4e-026 1.9e-021 # CACAGC GCTGTG 1742 1377 4.4e-012 1.9e-007 # CACTGC GCAGTG 1569 1228 1.0e-011 4.6e-007 # CGCAGC GCTGCG 1409 1202 1.4e-005 6.2e-001 # CGCTGC GCAGCG 1415 1235 1.5e-004 6.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 6159 E= 1.9e-021 0.000000 1.000000 0.000000 0.000000 0.563403 0.000000 0.436597 0.000000 0.000000 1.000000 0.000000 0.000000 0.511122 0.000000 0.000000 0.488878 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RTAAAYA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST RTAAAYA TRTTTAY 699 375 3.4e-024 1.5e-019 # GTAAATA TATTTAC 151 60 1.4e-010 6.0e-006 # GTAAACA TGTTTAC 190 98 2.8e-008 1.2e-003 # ATAAACA TGTTTAT 204 121 2.2e-006 9.5e-002 # ATAAATA TATTTAT 172 105 3.2e-005 1.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 721 E= 1.5e-019 0.528433 0.000000 0.471567 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.547850 0.000000 0.452150 1.000000 0.000000 0.000000 0.000000 MOTIF CACGTR DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CACGTR YACGTG 613 325 5.4e-022 2.4e-017 # CACGTG CACGTG 401 195 6.1e-018 2.6e-013 # CACGTA TACGTG 217 134 5.0e-006 2.2e-001 letter-probability matrix: alength= 4 w= 6 nsites= 647 E= 2.4e-017 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.344668 0.000000 0.655332 0.000000 MOTIF CCWCCTCC DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CCWCCTCC GGAGGWGG 455 228 6.2e-019 2.7e-014 # CCTCCTCC GGAGGAGG 299 138 3.4e-015 1.5e-010 # CCACCTCC GGAGGTGG 169 94 2.0e-006 8.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 473 E= 2.7e-014 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.350951 0.000000 0.000000 0.649049 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GRGTTCGA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GRGTTCGA TCGAACYC 147 37 4.3e-017 1.9e-012 # GAGTTCGA TCGAACTC 75 18 9.2e-010 4.0e-005 # GGGTTCGA TCGAACCC 73 19 5.9e-009 2.6e-004 letter-probability matrix: alength= 4 w= 8 nsites= 150 E= 1.9e-012 0.000000 0.000000 1.000000 0.000000 0.506667 0.000000 0.493333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACBAGG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CCACBAGG CCTVGTGG 358 175 5.3e-016 2.3e-011 # CCACCAGG CCTGGTGG 204 102 2.4e-009 1.1e-004 # CCACTAGG CCTAGTGG 95 39 6.9e-007 3.0e-002 # CCACGAGG CCTCGTGG 61 34 3.6e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 360 E= 2.3e-011 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.566667 0.169444 0.263889 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCMCRCCC DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CCMCRCCC GGGYGKGG 893 572 5.3e-018 2.3e-013 # CCCCGCCC GGGCGGGG 378 259 1.1e-006 4.9e-002 # CCACGCCC GGGCGTGG 145 78 4.0e-006 1.7e-001 # CCACACCC GGGTGTGG 167 96 6.6e-006 2.9e-001 # CCCCACCC GGGTGGGG 232 151 1.9e-005 8.1e-001 letter-probability matrix: alength= 4 w= 8 nsites= 928 E= 2.3e-013 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.339440 0.660560 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.429957 0.000000 0.570043 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF MMGGAA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST MMGGAA TTCCKK 2096 1611 2.2e-017 9.7e-013 # CCGGAA TTCCGG 659 485 9.6e-008 4.2e-003 # CAGGAA TTCCTG 649 493 1.5e-006 6.6e-002 # AAGGAA TTCCTT 516 402 7.8e-005 3.4e+000 # ACGGAA TTCCGT 366 299 4.9e-003 2.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 2294 E= 9.7e-013 0.394507 0.605493 0.000000 0.000000 0.520488 0.479512 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GASGTCA DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GASGTCA TGACSTC 478 266 1.8e-015 7.8e-011 # GAGGTCA TGACCTC 373 208 2.5e-012 1.1e-007 # GACGTCA TGACGTC 107 58 8.1e-005 3.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 493 E= 7.8e-011 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.231237 0.768763 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTANTTC DREME-24 # Word RC Word Pos Neg P-value E-value # BEST AGTANTTC GAANTACT 202 75 5.0e-015 2.2e-010 # AGTACTTC GAAGTACT 77 19 8.9e-010 3.8e-005 # AGTAGTTC GAACTACT 61 28 3.0e-004 1.3e+001 # AGTATTTC GAAATACT 37 16 2.7e-003 1.2e+002 # AGTAATTC GAATTACT 28 12 8.3e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 205 E= 2.2e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.136585 0.380488 0.297561 0.185366 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ASGCWG DREME-25 # Word RC Word Pos Neg P-value E-value # BEST ASGCWG CWGCST 3375 2839 4.4e-014 1.9e-009 # AGGCAG CTGCCT 1628 1356 1.1e-007 4.7e-003 # ACGCAG CTGCGT 393 279 5.2e-006 2.2e-001 # AGGCTG CAGCCT 1324 1150 1.6e-004 6.7e+000 # ACGCTG CAGCGT 345 272 1.7e-003 7.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 3826 E= 1.9e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.195504 0.804496 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.549922 0.000000 0.000000 0.450078 0.000000 0.000000 1.000000 0.000000 MOTIF AAACCCVG DREME-26 # Word RC Word Pos Neg P-value E-value # BEST AAACCCVG CBGGGTTT 183 75 5.8e-012 2.5e-007 # AAACCCAG CTGGGTTT 98 43 2.0e-006 8.5e-002 # AAACCCCG CGGGGTTT 47 18 2.1e-004 8.9e+000 # AAACCCGG CCGGGTTT 38 14 5.9e-004 2.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 184 E= 2.5e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.532609 0.255435 0.211957 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGGKGAC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CGGKGAC GTCMCCG 409 240 1.1e-011 4.7e-007 # CGGGGAC GTCCCCG 295 167 1.1e-009 4.7e-005 # CGGTGAC GTCACCG 117 74 1.1e-003 4.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 417 E= 4.7e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.719424 0.280576 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AATACAWA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST AATACAWA TWTGTATT 140 50 2.1e-011 8.9e-007 # AATACAAA TTTGTATT 104 35 1.8e-009 7.7e-005 # AATACATA TATGTATT 36 15 2.3e-003 9.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 8.9e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.737589 0.000000 0.000000 0.262411 1.000000 0.000000 0.000000 0.000000 MOTIF GTCATTCA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST GTCATTCA TGAATGAC 168 69 4.6e-011 2.0e-006 # GTCATTCA TGAATGAC 168 69 4.6e-011 2.0e-006 letter-probability matrix: alength= 4 w= 8 nsites= 174 E= 2.0e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGSCYCAG DREME-30 # Word RC Word Pos Neg P-value E-value # BEST AGSCYCAG CTGRGSCT 588 383 1.4e-011 5.9e-007 # AGCCTCAG CTGAGGCT 126 58 2.8e-007 1.2e-002 # AGCCCCAG CTGGGGCT 188 122 9.9e-005 4.3e+000 # AGGCTCAG CTGAGCCT 144 90 2.4e-004 1.0e+001 # AGGCCCAG CTGGGCCT 164 118 3.5e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 605 E= 5.9e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.510744 0.489256 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.588430 0.000000 0.411570 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCATTKTA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST CCATTKTA TAMAATGG 173 73 6.7e-011 2.9e-006 # CCATTTTA TAAAATGG 106 36 1.6e-009 6.8e-005 # CCATTGTA TACAATGG 67 37 2.1e-003 8.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 2.9e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.387283 0.612717 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTGTGYGY DREME-32 # Word RC Word Pos Neg P-value E-value # BEST GTGTGYGY RCRCACAC 356 205 6.8e-011 2.9e-006 # GTGTGTGT ACACACAC 196 108 2.3e-007 9.7e-003 # GTGTGTGC GCACACAC 139 83 9.9e-005 4.2e+000 # GTGTGCGT ACGCACAC 45 19 7.7e-004 3.3e+001 # GTGTGCGC GCGCACAC 58 33 5.7e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 536 E= 2.9e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.160448 0.000000 0.839552 0.000000 0.000000 1.000000 0.000000 0.000000 0.322761 0.000000 0.677239 MOTIF GAGACRGA DREME-33 # Word RC Word Pos Neg P-value E-value # BEST GAGACRGA TCYGTCTC 202 96 3.4e-010 1.4e-005 # GAGACAGA TCTGTCTC 150 76 4.5e-007 1.9e-002 # GAGACGGA TCCGTCTC 52 20 1.0e-004 4.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 211 E= 1.4e-005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.748815 0.000000 0.251185 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTAAGTR DREME-34 # Word RC Word Pos Neg P-value E-value # BEST AGTAAGTR YACTTACT 91 26 5.7e-010 2.4e-005 # AGTAAGTA TACTTACT 42 10 4.5e-006 1.9e-001 # AGTAAGTG CACTTACT 49 16 2.5e-005 1.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 2.4e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.461538 0.000000 0.538462 0.000000 MOTIF ACAGHGC DREME-35 # Word RC Word Pos Neg P-value E-value # BEST ACAGHGC GCDCTGT 800 578 5.9e-010 2.5e-005 # ACAGAGC GCTCTGT 392 274 2.2e-006 9.6e-002 # ACAGTGC GCACTGT 283 213 8.9e-004 3.8e+001 # ACAGCGC GCGCTGT 139 99 5.5e-003 2.4e+002 letter-probability matrix: alength= 4 w= 7 nsites= 829 E= 2.5e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.483715 0.170084 0.000000 0.346200 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCTACWAA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST TCTACWAA TTWGTAGA 132 52 1.5e-009 6.4e-005 # TCTACTAA TTAGTAGA 73 18 2.4e-009 1.0e-004 # TCTACAAA TTTGTAGA 59 34 6.1e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 132 E= 6.4e-005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.446970 0.000000 0.000000 0.553030 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CSGCTCC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CSGCTCC GGAGCSG 839 617 1.6e-009 6.8e-005 # CGGCTCC GGAGCCG 448 289 1.8e-009 7.7e-005 # CCGCTCC GGAGCGG 415 336 2.0e-003 8.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 886 E= 6.8e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.480813 0.519187 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCDCCCAC DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CCDCCCAC GTGGGHGG 258 142 2.9e-009 1.2e-004 # CCACCCAC GTGGGTGG 90 47 1.5e-004 6.2e+000 # CCGCCCAC GTGGGCGG 83 44 3.4e-004 1.4e+001 # CCTCCCAC GTGGGAGG 86 52 2.4e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 260 E= 1.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.346154 0.000000 0.323077 0.330769 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCDGGA DREME-39 # Word RC Word Pos Neg P-value E-value # BEST CCDGGA TCCHGG 2527 2177 2.4e-008 1.0e-003 # CCGGGA TCCCGG 463 346 1.8e-005 7.7e-001 # CCTGGA TCCAGG 1301 1156 1.3e-003 5.6e+001 # CCAGGA TCCTGG 1131 1011 4.0e-003 1.7e+002 letter-probability matrix: alength= 4 w= 6 nsites= 2757 E= 1.0e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.384476 0.000000 0.175916 0.439608 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTTAMAAA DREME-40 # Word RC Word Pos Neg P-value E-value # BEST TTTAMAAA TTTKTAAA 155 74 4.2e-008 1.8e-003 # TTTAAAAA TTTTTAAA 106 53 1.5e-005 6.5e-001 # TTTACAAA TTTGTAAA 49 22 9.0e-004 3.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 156 E= 1.8e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.685897 0.314103 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTCATTWA DREME-41 # Word RC Word Pos Neg P-value E-value # BEST TTCATTWA TWAATGAA 223 124 5.2e-008 2.2e-003 # TTCATTTA TAAATGAA 146 76 1.4e-006 6.0e-002 # TTCATTAA TTAATGAA 79 49 5.0e-003 2.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 225 E= 2.2e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.351111 0.000000 0.000000 0.648889 1.000000 0.000000 0.000000 0.000000 MOTIF AGDAAC DREME-42 # Word RC Word Pos Neg P-value E-value # BEST AGDAAC GTTHCT 1697 1413 5.5e-008 2.3e-003 # AGGAAC GTTCCT 411 321 4.4e-004 1.9e+001 # AGAAAC GTTTCT 924 793 6.5e-004 2.8e+001 # AGTAAC GTTACT 408 341 7.4e-003 3.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1791 E= 2.3e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.533780 0.000000 0.232831 0.233389 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATARTAGG DREME-43 # Word RC Word Pos Neg P-value E-value # BEST ATARTAGG CCTAYTAT 73 22 7.1e-008 3.0e-003 # ATAGTAGG CCTACTAT 42 14 1.2e-004 4.9e+000 # ATAATAGG CCTATTAT 31 8 1.5e-004 6.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 3.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.418919 0.000000 0.581081 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCGGAAS DREME-44 # Word RC Word Pos Neg P-value E-value # BEST GCGGAAS STTCCGC 391 259 9.9e-008 4.2e-003 # GCGGAAG CTTCCGC 262 173 1.0e-005 4.4e-001 # GCGGAAC GTTCCGC 133 86 8.8e-004 3.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 402 E= 4.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.335821 0.664179 0.000000 MOTIF GGTGCTKA DREME-45 # Word RC Word Pos Neg P-value E-value # BEST GGTGCTKA TMAGCACC 178 94 1.8e-007 7.6e-003 # GGTGCTGA TCAGCACC 137 79 4.6e-005 1.9e+000 # GGTGCTTA TAAGCACC 41 15 3.4e-004 1.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 192 E= 7.6e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.786458 0.213542 1.000000 0.000000 0.000000 0.000000 MOTIF RGCCACA DREME-46 # Word RC Word Pos Neg P-value E-value # BEST RGCCACA TGTGGCY 638 471 2.0e-007 8.3e-003 # AGCCACA TGTGGCT 312 216 1.5e-005 6.3e-001 # GGCCACA TGTGGCC 332 258 1.2e-003 5.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 655 E= 8.3e-003 0.482443 0.000000 0.517557 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCYAGCAC DREME-47 # Word RC Word Pos Neg P-value E-value # BEST CCYAGCAC GTGCTRGG 203 113 2.1e-007 8.8e-003 # CCCAGCAC GTGCTGGG 140 81 4.2e-005 1.8e+000 # CCTAGCAC GTGCTAGG 63 32 9.5e-004 4.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 207 E= 8.8e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.695652 0.000000 0.304348 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGATCRCG DREME-48 # Word RC Word Pos Neg P-value E-value # BEST AGATCRCG CGYGATCT 46 9 2.1e-007 9.0e-003 # AGATCGCG CGCGATCT 28 5 3.3e-005 1.4e+000 # AGATCACG CGTGATCT 18 4 2.2e-003 9.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 9.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.391304 0.000000 0.608696 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TSAACAAA DREME-49 # Word RC Word Pos Neg P-value E-value # BEST TSAACAAA TTTGTTSA 236 141 5.0e-007 2.1e-002 # TGAACAAA TTTGTTCA 117 61 1.6e-005 6.6e-001 # TCAACAAA TTTGTTGA 120 81 3.5e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 240 E= 2.1e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.504167 0.495833 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGCWGC DREME-50 # Word RC Word Pos Neg P-value E-value # BEST CTGCWGC GCWGCAG 758 583 6.2e-007 2.6e-002 # CTGCTGC GCAGCAG 458 339 1.2e-005 4.9e-001 # CTGCAGC GCTGCAG 364 271 1.1e-004 4.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 777 E= 2.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.438867 0.000000 0.000000 0.561133 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AACATGGY DREME-51 # Word RC Word Pos Neg P-value E-value # BEST AACATGGY RCCATGTT 133 66 1.1e-006 4.6e-002 # AACATGGC GCCATGTT 67 31 1.7e-004 7.4e+000 # AACATGGT ACCATGTT 66 35 1.3e-003 5.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 134 E= 4.6e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.507463 0.000000 0.492537 # Stopping reason: E-value threshold exceeded # Running time: 5000.87 seconds