# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 27201 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:45 PST 2017) # negatives: 27201 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:46 PST 2017) # host: indra # when: Wed Nov 22 13:00:17 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.214 C 0.284 G 0.287 T 0.216 MOTIF SMGGAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST SMGGAA TTCCKS 9984 5642 7.7e-374 3.5e-369 # CCGGAA TTCCGG 3058 1054 4.0e-241 1.8e-236 # CAGGAA TTCCTG 3682 1908 9.3e-141 4.2e-136 # GAGGAA TTCCTC 3202 2016 1.6e-067 7.5e-063 # GCGGAA TTCCGC 1988 1123 2.7e-058 1.3e-053 letter-probability matrix: alength= 4 w= 6 nsites= 13228 E= 3.5e-369 0.000000 0.574841 0.425159 0.000000 0.569323 0.430677 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF BTTATCW DREME-2 # Word RC Word Pos Neg P-value E-value # BEST BTTATCW WGATAAV 3322 1101 2.1e-277 9.7e-273 # CTTATCT AGATAAG 1125 216 3.9e-152 1.8e-147 # TTTATCT AGATAAA 730 223 7.8e-065 3.5e-060 # CTTATCA TGATAAG 619 187 8.1e-056 3.6e-051 # GTTATCT AGATAAC 496 166 8.3e-040 3.7e-035 # TTTATCA TGATAAA 447 199 2.1e-023 9.5e-019 # GTTATCA TGATAAC 300 140 7.0e-015 3.2e-010 letter-probability matrix: alength= 4 w= 7 nsites= 3847 E= 9.7e-273 0.000000 0.469977 0.210814 0.319210 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.364960 0.000000 0.000000 0.635040 MOTIF DAAATR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST DAAATR YATTTH 6301 4295 2.8e-105 1.3e-100 # AAAATA TATTTT 1611 944 3.0e-042 1.3e-037 # AAAATG CATTTT 1909 1222 4.0e-037 1.8e-032 # GAAATG CATTTC 1510 966 1.8e-029 7.9e-025 # GAAATA TATTTC 952 630 1.0e-016 4.7e-012 # TAAATA TATTTA 816 555 4.9e-013 2.2e-008 # TAAATG CATTTA 865 672 3.3e-007 1.5e-002 letter-probability matrix: alength= 4 w= 6 nsites= 8032 E= 1.3e-100 0.471614 0.000000 0.315115 0.213272 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.440737 0.000000 0.559263 0.000000 MOTIF SYGGGA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST SYGGGA TCCCRS 9019 6794 1.9e-098 8.6e-094 # CTGGGA TCCCAG 3379 2235 4.9e-059 2.2e-054 # CCGGGA TCCCGG 2474 1691 6.0e-037 2.7e-032 # GCGGGA TCCCGC 2529 1931 4.7e-021 2.1e-016 # GTGGGA TCCCAC 2135 1662 9.2e-016 4.1e-011 letter-probability matrix: alength= 4 w= 6 nsites= 11358 E= 8.6e-094 0.000000 0.557140 0.442860 0.000000 0.000000 0.487058 0.000000 0.512942 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYCCDCCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CYCCDCCC GGGHGGRG 3660 2200 1.1e-091 5.0e-087 # CCCCGCCC GGGCGGGG 1296 628 2.0e-055 8.8e-051 # CCCCACCC GGGTGGGG 692 358 6.3e-026 2.8e-021 # CCCCTCCC GGGAGGGG 812 457 2.2e-024 1.0e-019 # CTCCTCCC GGGAGGAG 496 315 8.1e-011 3.6e-006 # CTCCGCCC GGGCGGAG 512 345 4.9e-009 2.2e-004 # CTCCACCC GGGTGGAG 343 251 8.5e-005 3.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 4219 E= 5.0e-087 0.000000 1.000000 0.000000 0.000000 0.000000 0.679545 0.000000 0.320455 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.240815 0.000000 0.449396 0.309789 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAABATGG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAABATGG CCATVTTG 748 193 3.0e-079 1.3e-074 # CAAGATGG CCATCTTG 498 95 7.8e-068 3.5e-063 # CAACATGG CCATGTTG 175 61 2.7e-014 1.2e-009 # CAATATGG CCATATTG 76 38 2.3e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 764 E= 1.3e-074 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.229058 0.671466 0.099476 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TGACTCAB DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 791 246 9.6e-069 4.3e-064 # TGACTCAG CTGAGTCA 347 107 3.7e-031 1.6e-026 # TGACTCAT ATGAGTCA 219 59 3.3e-023 1.5e-018 # TGACTCAC GTGAGTCA 239 82 2.4e-019 1.1e-014 letter-probability matrix: alength= 4 w= 8 nsites= 816 E= 4.3e-064 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.296569 0.430147 0.273284 MOTIF CCDCMGCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCDCMGCC GGCKGHGG 2466 1445 2.9e-065 1.3e-060 # CCGCCGCC GGCGGCGG 941 466 1.6e-038 7.1e-034 # CCTCAGCC GGCTGAGG 510 268 8.7e-019 3.9e-014 # CCACCGCC GGCGGTGG 298 159 3.2e-011 1.4e-006 # CCTCCGCC GGCGGAGG 352 216 5.3e-009 2.4e-004 # CCACAGCC GGCTGTGG 288 171 2.3e-008 1.0e-003 # CCGCAGCC GGCTGCGG 384 260 5.0e-007 2.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 2838 E= 1.3e-060 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200141 0.000000 0.503171 0.296688 0.000000 1.000000 0.000000 0.000000 0.418252 0.581748 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AMACAS DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AMACAS STGTKT 5363 3986 1.4e-055 6.1e-051 # ACACAG CTGTGT 2003 1354 2.6e-031 1.1e-026 # ACACAC GTGTGT 1452 992 8.1e-022 3.6e-017 # AAACAC GTGTTT 1310 946 2.6e-015 1.1e-010 # AAACAG CTGTTT 1602 1268 8.1e-011 3.6e-006 letter-probability matrix: alength= 4 w= 6 nsites= 6620 E= 6.1e-051 1.000000 0.000000 0.000000 0.000000 0.437311 0.562689 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.447885 0.552115 0.000000 MOTIF GTSACD DREME-10 # Word RC Word Pos Neg P-value E-value # BEST GTSACD HGTSAC 4132 3035 2.5e-044 1.1e-039 # GTGACG CGTCAC 874 560 2.1e-017 9.0e-013 # GTCACT AGTGAC 1320 947 6.3e-016 2.7e-011 # GTGACT AGTCAC 1258 928 3.1e-013 1.4e-008 # GTCACA TGTGAC 1189 900 6.2e-011 2.7e-006 # GTCACG CGTGAC 735 523 8.1e-010 3.5e-005 # GTGACA TGTCAC 1193 924 1.3e-009 5.9e-005 letter-probability matrix: alength= 4 w= 6 nsites= 4556 E= 1.1e-039 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.494293 0.505707 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.367428 0.000000 0.257902 0.374671 MOTIF CWGCWGC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CWGCWGC GCWGCWG 3124 2231 3.6e-038 1.5e-033 # CAGCAGC GCTGCTG 1156 750 1.3e-021 5.6e-017 # CTGCAGC GCTGCAG 968 613 5.8e-020 2.5e-015 # CAGCTGC GCAGCTG 939 633 2.4e-015 1.1e-010 # CTGCTGC GCAGCAG 989 790 8.9e-007 3.8e-002 letter-probability matrix: alength= 4 w= 7 nsites= 3375 E= 1.5e-033 0.000000 1.000000 0.000000 0.000000 0.522667 0.000000 0.000000 0.477333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.530074 0.000000 0.000000 0.469926 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF SAGAWA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST SAGAWA TWTCTS 4513 3483 5.2e-036 2.2e-031 # GAGATA TATCTC 780 478 3.2e-018 1.4e-013 # CAGATA TATCTG 758 470 4.4e-017 1.9e-012 # GAGAAA TTTCTC 1719 1413 9.7e-009 4.2e-004 # CAGAAA TTTCTG 1611 1346 2.9e-007 1.3e-002 letter-probability matrix: alength= 4 w= 6 nsites= 5057 E= 2.2e-031 0.000000 0.483488 0.516512 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.687760 0.000000 0.000000 0.312240 1.000000 0.000000 0.000000 0.000000 MOTIF KTCCCCR DREME-13 # Word RC Word Pos Neg P-value E-value # BEST KTCCCCR YGGGGAM 2393 1648 1.6e-034 6.9e-030 # GTCCCCG CGGGGAC 648 393 6.9e-016 2.9e-011 # TTCCCCA TGGGGAA 749 491 6.4e-014 2.7e-009 # GTCCCCA TGGGGAC 621 464 8.3e-007 3.5e-002 # TTCCCCG CGGGGAA 459 344 2.5e-005 1.1e+000 letter-probability matrix: alength= 4 w= 7 nsites= 2526 E= 6.9e-030 0.000000 0.000000 0.513460 0.486540 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.551069 0.000000 0.448931 0.000000 MOTIF GCSTGTAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GCSTGTAA TTACASGC 252 51 1.4e-033 6.0e-029 # GCCTGTAA TTACAGGC 222 44 3.4e-030 1.4e-025 # GCGTGTAA TTACACGC 30 7 9.5e-005 4.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 252 E= 6.0e-029 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.880952 0.119048 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGCCTGG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CAGCCTGG CCAGGCTG 464 188 1.8e-028 7.8e-024 # CAGCCTGG CCAGGCTG 464 188 1.8e-028 7.8e-024 letter-probability matrix: alength= 4 w= 8 nsites= 466 E= 7.8e-024 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAAWAAAA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AAAWAAAA TTTTWTTT 541 241 5.4e-028 2.3e-023 # AAAAAAAA TTTTTTTT 508 224 7.3e-027 3.1e-022 # AAATAAAA TTTTATTT 36 17 6.3e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 712 E= 2.3e-023 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.949438 0.000000 0.000000 0.050562 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACGTGD DREME-17 # Word RC Word Pos Neg P-value E-value # BEST ACGTGD HCACGT 1297 825 5.8e-026 2.5e-021 # ACGTGG CCACGT 772 450 4.8e-021 2.0e-016 # ACGTGT ACACGT 359 226 1.8e-008 7.6e-004 # ACGTGA TCACGT 321 226 2.6e-005 1.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 1349 E= 2.5e-021 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.212009 0.000000 0.546331 0.241660 MOTIF RGAMGGAA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RGAMGGAA TTCCKTCY 617 317 1.2e-023 5.1e-019 # GGAAGGAA TTCCTTCC 222 87 3.9e-015 1.7e-010 # AGAAGGAA TTCCTTCT 253 148 8.0e-008 3.4e-003 # GGACGGAA TTCCGTCC 96 51 1.3e-004 5.3e+000 # AGACGGAA TTCCGTCT 70 34 2.6e-004 1.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 645 E= 5.1e-019 0.493023 0.000000 0.506977 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.739535 0.260465 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGGCGDC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST ATGGCGDC GHCGCCAT 261 95 1.9e-019 8.1e-015 # ATGGCGGC GCCGCCAT 155 45 1.1e-015 4.5e-011 # ATGGCGAC GTCGCCAT 60 27 2.6e-004 1.1e+001 # ATGGCGTC GACGCCAT 48 23 2.0e-003 8.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 263 E= 8.1e-015 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.224335 0.000000 0.593156 0.182510 0.000000 1.000000 0.000000 0.000000 MOTIF AGGCBGAG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST AGGCBGAG CTCVGCCT 609 338 2.5e-019 1.1e-014 # AGGCTGAG CTCAGCCT 255 122 2.7e-012 1.2e-007 # AGGCCGAG CTCGGCCT 202 126 1.5e-005 6.4e-001 # AGGCGGAG CTCCGCCT 156 94 5.1e-005 2.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 618 E= 1.1e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.330097 0.257282 0.412621 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RGGAAR DREME-21 # Word RC Word Pos Neg P-value E-value # BEST RGGAAR YTTCCY 4689 3954 3.6e-018 1.5e-013 # GGGAAG CTTCCC 2081 1709 2.0e-010 8.5e-006 # AGGAAG CTTCCT 980 779 6.1e-007 2.6e-002 # GGGAAA TTTCCC 1290 1131 5.1e-004 2.1e+001 # AGGAAA TTTCCT 733 634 3.6e-003 1.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 5229 E= 1.5e-013 0.331612 0.000000 0.668388 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.394339 0.000000 0.605661 0.000000 MOTIF RRACTACA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST RRACTACA TGTAGTYY 354 168 9.9e-017 4.2e-012 # GGACTACA TGTAGTCC 107 42 4.8e-008 2.0e-003 # GAACTACA TGTAGTTC 89 31 5.4e-008 2.3e-003 # AAACTACA TGTAGTTT 97 57 7.8e-004 3.3e+001 # AGACTACA TGTAGTCT 67 38 3.0e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 371 E= 4.2e-012 0.447439 0.000000 0.552561 0.000000 0.509434 0.000000 0.490566 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAACCAGA DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GAACCAGA TCTGGTTC 221 81 1.5e-016 6.4e-012 # GAACCAGA TCTGGTTC 221 81 1.5e-016 6.4e-012 letter-probability matrix: alength= 4 w= 8 nsites= 221 E= 6.4e-012 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CSCRGCC DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CSCRGCC GGCYGSG 3706 3094 1.1e-015 4.8e-011 # CCCGGCC GGCCGGG 1280 1025 3.1e-008 1.3e-003 # CCCAGCC GGCTGGG 1124 921 2.6e-006 1.1e-001 # CGCGGCC GGCCGCG 1259 1072 4.1e-005 1.7e+000 # CGCAGCC GGCTGCG 512 424 2.1e-003 8.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 4304 E= 4.8e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.573420 0.426580 0.000000 0.000000 1.000000 0.000000 0.000000 0.384991 0.000000 0.615009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAATTAK DREME-25 # Word RC Word Pos Neg P-value E-value # BEST AAAATTAK MTAATTTT 248 103 2.6e-015 1.1e-010 # AAAATTAG CTAATTTT 165 58 2.0e-013 8.4e-009 # AAAATTAT ATAATTTT 84 45 3.7e-004 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 251 E= 1.1e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.657371 0.342629 MOTIF CTCACTGC DREME-26 # Word RC Word Pos Neg P-value E-value # BEST CTCACTGC GCAGTGAG 282 126 3.1e-015 1.3e-010 # CTCACTGC GCAGTGAG 282 126 3.1e-015 1.3e-010 letter-probability matrix: alength= 4 w= 8 nsites= 283 E= 1.3e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACCAYG DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CACCAYG CRTGGTG 653 409 2.0e-014 8.3e-010 # CACCATG CATGGTG 428 255 1.4e-011 5.8e-007 # CACCACG CGTGGTG 227 159 3.0e-004 1.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 664 E= 8.3e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.344880 0.000000 0.655120 0.000000 0.000000 1.000000 0.000000 MOTIF CTGTCTCH DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CTGTCTCH DGAGACAG 587 367 3.4e-013 1.4e-008 # CTGTCTCT AGAGACAG 213 126 1.2e-006 5.2e-002 # CTGTCTCC GGAGACAG 222 143 2.0e-005 8.3e-001 # CTGTCTCA TGAGACAG 160 101 1.5e-004 6.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 598 E= 1.4e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.267559 0.371237 0.000000 0.361204 MOTIF GCGCGYGY DREME-29 # Word RC Word Pos Neg P-value E-value # BEST GCGCGYGY RCRCGCGC 693 456 8.3e-013 3.5e-008 # GCGCGCGC GCGCGCGC 400 237 4.3e-011 1.8e-006 # GCGCGTGC GCACGCGC 208 126 4.0e-006 1.7e-001 # GCGCGCGT ACGCGCGC 170 97 4.4e-006 1.9e-001 # GCGCGTGT ACACGCGC 68 40 4.5e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 798 E= 3.5e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.676692 0.000000 0.323308 0.000000 0.000000 1.000000 0.000000 0.000000 0.760652 0.000000 0.239348 MOTIF GCCACTGY DREME-30 # Word RC Word Pos Neg P-value E-value # BEST GCCACTGY RCAGTGGC 358 194 1.1e-012 4.5e-008 # GCCACTGC GCAGTGGC 244 131 2.5e-009 1.1e-004 # GCCACTGT ACAGTGGC 114 63 7.6e-005 3.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 358 E= 4.5e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.681564 0.000000 0.318436 MOTIF ACGGAAST DREME-31 # Word RC Word Pos Neg P-value E-value # BEST ACGGAAST ASTTCCGT 108 28 1.3e-012 5.5e-008 # ACGGAAGT ACTTCCGT 66 13 5.3e-010 2.2e-005 # ACGGAACT AGTTCCGT 42 15 2.3e-004 9.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 109 E= 5.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.385321 0.614679 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CCVAGTAG DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CCVAGTAG CTACTBGG 250 120 5.3e-012 2.2e-007 # CCGAGTAG CTACTCGG 73 23 1.5e-007 6.4e-003 # CCCAGTAG CTACTGGG 91 47 1.1e-004 4.6e+000 # CCAAGTAG CTACTTGG 86 50 1.3e-003 5.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 250 E= 2.2e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.344000 0.364000 0.292000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CRSCTCC DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CRSCTCC GGAGSYG 2785 2317 3.2e-012 1.3e-007 # CGGCTCC GGAGCCG 792 613 7.3e-007 3.0e-002 # CACCTCC GGAGGTG 629 501 6.6e-005 2.8e+000 # CAGCTCC GGAGCTG 816 672 8.4e-005 3.5e+000 # CGCCTCC GGAGGCG 722 630 6.1e-003 2.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 3012 E= 1.3e-007 0.000000 1.000000 0.000000 0.000000 0.487052 0.000000 0.512948 0.000000 0.000000 0.454847 0.545153 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGACSTC DREME-34 # Word RC Word Pos Neg P-value E-value # BEST CTGACSTC GASGTCAG 285 147 1.2e-011 5.2e-007 # CTGACCTC GAGGTCAG 229 118 1.2e-009 4.9e-005 # CTGACGTC GACGTCAG 56 29 2.2e-003 9.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 289 E= 5.2e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.802768 0.197232 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TTTAWAA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST TTTAWAA TTWTAAA 475 296 4.4e-011 1.9e-006 # TTTAAAA TTTTAAA 330 197 3.2e-009 1.3e-004 # TTTATAA TTATAAA 149 107 5.0e-003 2.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 495 E= 1.9e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.694949 0.000000 0.000000 0.305051 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRTCTCTA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST CRTCTCTA TAGAGAYG 157 62 5.0e-011 2.1e-006 # CGTCTCTA TAGAGACG 78 17 7.9e-011 3.3e-006 # CATCTCTA TAGAGATG 79 45 1.4e-003 6.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 157 E= 2.1e-006 0.000000 1.000000 0.000000 0.000000 0.503185 0.000000 0.496815 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARCCACA DREME-37 # Word RC Word Pos Neg P-value E-value # BEST ARCCACA TGTGGYT 804 570 8.8e-011 3.7e-006 # AGCCACA TGTGGCT 462 329 1.1e-006 4.5e-002 # AACCACA TGTGGTT 346 245 1.7e-005 7.1e-001 letter-probability matrix: alength= 4 w= 7 nsites= 823 E= 3.7e-006 1.000000 0.000000 0.000000 0.000000 0.425273 0.000000 0.574727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TAATAATR DREME-38 # Word RC Word Pos Neg P-value E-value # BEST TAATAATR YATTATTA 105 31 6.3e-011 2.6e-006 # TAATAATA TATTATTA 67 18 4.1e-008 1.7e-003 # TAATAATG CATTATTA 43 14 7.6e-005 3.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 2.6e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.618182 0.000000 0.381818 0.000000 MOTIF ARATA DREME-39 # Word RC Word Pos Neg P-value E-value # BEST ARATA TATYT 1889 1531 1.4e-010 5.8e-006 # AGATA TATCT 1058 852 8.8e-007 3.7e-002 # AAATA TATTT 893 722 8.6e-006 3.6e-001 letter-probability matrix: alength= 4 w= 5 nsites= 2012 E= 5.8e-006 1.000000 0.000000 0.000000 0.000000 0.455765 0.000000 0.544235 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCTGACA DREME-40 # Word RC Word Pos Neg P-value E-value # BEST CTCTGACA TGTCAGAG 209 100 2.4e-010 1.0e-005 # CTCTGACA TGTCAGAG 209 100 2.4e-010 1.0e-005 letter-probability matrix: alength= 4 w= 8 nsites= 210 E= 1.0e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATCRCTTG DREME-41 # Word RC Word Pos Neg P-value E-value # BEST ATCRCTTG CAAGYGAT 172 80 3.1e-009 1.3e-004 # ATCGCTTG CAAGCGAT 68 26 8.5e-006 3.5e-001 # ATCACTTG CAAGTGAT 104 54 4.2e-005 1.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 172 E= 1.3e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.604651 0.000000 0.395349 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACCCGGA DREME-42 # Word RC Word Pos Neg P-value E-value # BEST ACCCGGA TCCGGGT 278 159 5.9e-009 2.5e-004 # ACCCGGA TCCGGGT 278 159 5.9e-009 2.5e-004 letter-probability matrix: alength= 4 w= 7 nsites= 283 E= 2.5e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CASATG DREME-43 # Word RC Word Pos Neg P-value E-value # BEST CASATG CATSTG 2332 1980 1.2e-008 5.2e-004 # CACATG CATGTG 1081 849 4.2e-008 1.7e-003 # CAGATG CATCTG 1311 1173 2.4e-003 1.0e+002 letter-probability matrix: alength= 4 w= 6 nsites= 2493 E= 5.2e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.454071 0.545929 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGSCTGGA DREME-44 # Word RC Word Pos Neg P-value E-value # BEST GGSCTGGA TCCAGSCC 527 363 1.7e-008 6.9e-004 # GGGCTGGA TCCAGCCC 287 200 4.4e-005 1.8e+000 # GGCCTGGA TCCAGGCC 241 164 7.2e-005 3.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 534 E= 6.9e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.456929 0.543071 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACTTTGG DREME-45 # Word RC Word Pos Neg P-value E-value # BEST CACTTTGG CCAAAGTG 182 91 1.8e-008 7.4e-004 # CACTTTGG CCAAAGTG 182 91 1.8e-008 7.4e-004 letter-probability matrix: alength= 4 w= 8 nsites= 182 E= 7.4e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACGGAGTC DREME-46 # Word RC Word Pos Neg P-value E-value # BEST ACGGAGTC GACTCCGT 65 19 2.3e-007 9.6e-003 # ACGGAGTC GACTCCGT 65 19 2.3e-007 9.6e-003 letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 9.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTAAACA DREME-47 # Word RC Word Pos Neg P-value E-value # BEST GTAAACA TGTTTAC 139 68 4.3e-007 1.8e-002 # GTAAACA TGTTTAC 139 68 4.3e-007 1.8e-002 letter-probability matrix: alength= 4 w= 7 nsites= 139 E= 1.8e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCCGGGCW DREME-48 # Word RC Word Pos Neg P-value E-value # BEST TCCGGGCW WGCCCGGA 204 116 4.6e-007 1.9e-002 # TCCGGGCT AGCCCGGA 107 60 1.7e-004 6.9e+000 # TCCGGGCA TGCCCGGA 97 56 5.7e-004 2.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 204 E= 1.9e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.475490 0.000000 0.000000 0.524510 MOTIF CTCCCTCC DREME-49 # Word RC Word Pos Neg P-value E-value # BEST CTCCCTCC GGAGGGAG 386 260 3.5e-007 1.4e-002 # CTCCCTCC GGAGGGAG 386 260 3.5e-007 1.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 397 E= 1.4e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GSCTGATA DREME-50 # Word RC Word Pos Neg P-value E-value # BEST GSCTGATA TATCAGSC 101 43 7.2e-007 3.0e-002 # GGCTGATA TATCAGCC 51 21 2.7e-004 1.1e+001 # GCCTGATA TATCAGGC 50 22 6.4e-004 2.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 101 E= 3.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.495050 0.504950 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGTTYCAC DREME-51 # Word RC Word Pos Neg P-value E-value # BEST GGTTYCAC GTGRAACC 192 109 9.3e-007 3.8e-002 # GGTTTCAC GTGAAACC 96 48 3.8e-005 1.6e+000 # GGTTCCAC GTGGAACC 96 61 3.2e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 192 E= 3.8e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CDCCGC DREME-52 # Word RC Word Pos Neg P-value E-value # BEST CDCCGC GCGGHG 4491 4086 1.0e-006 4.1e-002 # CACCGC GCGGTG 1175 1021 4.3e-004 1.8e+001 # CGCCGC GCGGCG 2477 2264 6.3e-004 2.6e+001 # CTCCGC GCGGAG 1470 1323 2.3e-003 9.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 5493 E= 4.1e-002 0.000000 1.000000 0.000000 0.000000 0.217003 0.000000 0.511378 0.271618 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CGCATGCG DREME-53 # Word RC Word Pos Neg P-value E-value # BEST CGCATGCG CGCATGCG 47 10 3.7e-007 1.5e-002 # CGCATGCG CGCATGCG 47 10 3.7e-007 1.5e-002 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.5e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGCTGTCC DREME-54 # Word RC Word Pos Neg P-value E-value # BEST CGCTGTCC GGACAGCG 117 53 4.9e-007 2.0e-002 # CGCTGTCC GGACAGCG 117 53 4.9e-007 2.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 2.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 6272.96 seconds