# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 7467 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:43 PST 2017) # negatives: 7467 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ZBTB11-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:43 PST 2017) # host: surya # when: Wed Nov 22 13:04:16 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.207 C 0.293 G 0.294 T 0.206 MOTIF SMGGAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST SMGGAA TTCCKS 4357 1756 1.3e-419 5.8e-415 # CCGGAA TTCCGG 1878 437 6.4e-248 2.9e-243 # CAGGAA TTCCTG 1493 522 4.7e-124 2.1e-119 # GCGGAA TTCCGC 1082 390 2.2e-083 9.8e-079 # GAGGAA TTCCTC 1173 572 5.8e-054 2.6e-049 letter-probability matrix: alength= 4 w= 6 nsites= 6478 E= 5.8e-415 0.000000 0.618555 0.381445 0.000000 0.466502 0.533498 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RRACTACA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RRACTACA TGTAGTYY 427 36 1.4e-088 6.4e-084 # GAACTACA TGTAGTTC 137 6 5.6e-034 2.5e-029 # GGACTACA TGTAGTCC 138 12 7.7e-029 3.4e-024 # AAACTACA TGTAGTTT 104 8 7.3e-023 3.2e-018 # AGACTACA TGTAGTCT 80 10 4.5e-015 2.0e-010 letter-probability matrix: alength= 4 w= 8 nsites= 484 E= 6.4e-084 0.390496 0.000000 0.609504 0.000000 0.518595 0.000000 0.481405 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGAAVY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGAAVY RBTTCC 2858 1846 1.2e-071 5.1e-067 # GGAAGT ACTTCC 622 307 3.4e-027 1.5e-022 # GGAACC GGTTCC 651 389 1.7e-017 7.5e-013 # GGAAAC GTTTCC 590 344 4.2e-017 1.9e-012 # GGAAAT ATTTCC 394 216 8.7e-014 3.9e-009 # GGAACT AGTTCC 520 336 5.1e-011 2.2e-006 # GGAAGC GCTTCC 650 478 5.6e-008 2.5e-003 letter-probability matrix: alength= 4 w= 6 nsites= 3578 E= 5.1e-067 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.286193 0.342091 0.371716 0.000000 0.000000 0.551705 0.000000 0.448295 MOTIF SYGGGA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST SYGGGA TCCCRS 2713 1889 1.1e-048 4.9e-044 # CTGGGA TCCCAG 1067 578 4.9e-038 2.1e-033 # CCGGGA TCCCGG 764 536 2.0e-011 8.8e-007 # GTGGGA TCCCAC 627 445 4.5e-009 2.0e-004 # GCGGGA TCCCGC 710 531 6.3e-008 2.8e-003 letter-probability matrix: alength= 4 w= 6 nsites= 3458 E= 4.9e-044 0.000000 0.587334 0.412666 0.000000 0.000000 0.464430 0.000000 0.535570 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCNGCNGC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GCNGCNGC GCNGCNGC 789 427 7.5e-028 3.3e-023 # GCCGCCGC GCGGCGGC 217 82 8.3e-016 3.6e-011 # GCAGCAGC GCTGCTGC 123 53 5.8e-008 2.5e-003 # GCGGCCGC GCGGCCGC 88 44 7.5e-005 3.3e+000 # GCGGCAGC GCTGCCGC 100 53 8.3e-005 3.6e+000 # GCCGCAGC GCTGCGGC 93 50 1.9e-004 8.3e+000 # GCAGCCGC GCGGCTGC 107 62 3.1e-004 1.4e+001 # GCAGCGGC GCCGCTGC 95 56 8.9e-004 3.9e+001 # GCTGCAGC GCTGCAGC 53 27 2.4e-003 1.0e+002 # GCAGCTGC GCAGCTGC 54 28 2.7e-003 1.2e+002 # GCCGCGGC GCCGCGGC 70 41 3.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 885 E= 3.3e-023 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.223729 0.266667 0.301695 0.207910 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.206780 0.307345 0.279096 0.206780 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACHGC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CACHGC GCDGTG 1540 1106 7.2e-021 3.1e-016 # CACAGC GCTGTG 603 380 9.5e-014 4.1e-009 # CACCGC GCGGTG 529 385 5.0e-007 2.2e-002 # CACTGC GCAGTG 533 397 2.3e-006 1.0e-001 letter-probability matrix: alength= 4 w= 6 nsites= 1732 E= 3.1e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.362009 0.318707 0.000000 0.319284 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GKRACAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GKRACAC GTGTYMC 455 233 1.7e-018 7.2e-014 # GTGACAC GTGTCAC 120 48 1.1e-008 4.8e-004 # GTAACAC GTGTTAC 85 35 2.6e-006 1.1e-001 # GGGACAC GTGTCCC 164 101 5.7e-005 2.4e+000 # GGAACAC GTGTTCC 97 54 2.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 483 E= 7.2e-014 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.556936 0.443064 0.385093 0.000000 0.614907 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF SWGATAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST SWGATAA TTATCWS 323 134 6.5e-020 2.8e-015 # GAGATAA TTATCTC 120 34 7.4e-013 3.2e-008 # GTGATAA TTATCAC 47 14 1.3e-005 5.6e-001 # CAGATAA TTATCTG 99 51 5.1e-005 2.2e+000 # CTGATAA TTATCAG 72 39 1.1e-003 4.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 342 E= 2.8e-015 0.000000 0.508772 0.491228 0.000000 0.646199 0.000000 0.000000 0.353801 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF KTCCCCR DREME-9 # Word RC Word Pos Neg P-value E-value # BEST KTCCCCR YGGGGAM 742 482 4.5e-015 1.9e-010 # GTCCCCA TGGGGAC 227 133 3.0e-007 1.3e-002 # TTCCCCA TGGGGAA 187 112 7.0e-006 3.0e-001 # GTCCCCG CGGGGAC 226 161 4.8e-004 2.0e+001 # TTCCCCG CGGGGAA 134 94 4.6e-003 1.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 795 E= 1.9e-010 0.000000 0.000000 0.589937 0.410063 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.537107 0.000000 0.462893 0.000000 MOTIF ACMCGGA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACMCGGA TCCGKGT 214 87 4.8e-014 2.0e-009 # ACCCGGA TCCGGGT 155 62 8.4e-011 3.6e-006 # ACACGGA TCCGTGT 60 26 1.5e-004 6.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 218 E= 2.0e-009 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.275229 0.724771 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACATCCK DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACATCCK MGGATGT 179 66 1.0e-013 4.3e-009 # ACATCCG CGGATGT 87 18 2.1e-012 9.0e-008 # ACATCCT AGGATGT 93 48 8.8e-005 3.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 184 E= 4.3e-009 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.483696 0.516304 MOTIF RACTACRA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST RACTACRA TYGTAGTY 74 12 2.1e-012 8.8e-008 # GACTACAA TTGTAGTC 25 3 1.4e-005 5.8e-001 # AACTACAA TTGTAGTT 13 0 1.2e-004 5.2e+000 # AACTACGA TCGTAGTT 15 2 1.2e-003 5.0e+001 # GACTACGA TCGTAGTC 21 7 6.2e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 8.8e-008 0.373333 0.000000 0.626667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.506667 0.000000 0.493333 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCMCGCCC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CCMCGCCC GGGCGKGG 310 166 9.7e-012 4.1e-007 # CCCCGCCC GGGCGGGG 239 132 1.0e-008 4.3e-004 # CCACGCCC GGGCGTGG 74 35 1.1e-004 4.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 325 E= 4.1e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.227692 0.772308 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCTGCAS DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GCTGCAS STGCAGC 293 156 2.6e-011 1.1e-006 # GCTGCAG CTGCAGC 166 79 1.1e-008 4.7e-004 # GCTGCAC GTGCAGC 130 77 1.3e-004 5.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 303 E= 1.1e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.438944 0.561056 0.000000 MOTIF WAAATR DREME-15 # Word RC Word Pos Neg P-value E-value # BEST WAAATR YATTTW 894 650 3.0e-011 1.3e-006 # TAAATA TATTTA 179 108 1.4e-005 5.9e-001 # AAAATA TATTTT 287 196 1.5e-005 6.4e-001 # TAAATG CATTTA 201 126 1.6e-005 6.9e-001 # AAAATG CATTTT 359 286 1.9e-003 7.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 1060 E= 1.3e-006 0.637736 0.000000 0.000000 0.362264 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.458491 0.000000 0.541509 0.000000 MOTIF ATGGCGRC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST ATGGCGRC GYCGCCAT 68 12 5.4e-011 2.3e-006 # ATGGCGGC GCCGCCAT 51 7 1.1e-009 4.8e-005 # ATGGCGAC GTCGCCAT 17 5 8.4e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.3e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.246377 0.000000 0.753623 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGRAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AGRAA TTYCT 2122 1785 1.9e-010 8.2e-006 # AGAAA TTTCT 1703 1454 3.3e-007 1.4e-002 # AGGAA TTCCT 600 461 5.4e-006 2.3e-001 letter-probability matrix: alength= 4 w= 5 nsites= 2636 E= 8.2e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.760243 0.000000 0.239757 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACACAS DREME-18 # Word RC Word Pos Neg P-value E-value # BEST ACACAS STGTGT 560 397 2.9e-008 1.2e-003 # ACACAC GTGTGT 300 202 5.0e-006 2.1e-001 # ACACAG CTGTGT 295 211 8.4e-005 3.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 628 E= 1.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.533439 0.466561 0.000000 MOTIF CTCCGCC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CTCCGCC GGCGGAG 343 218 4.2e-008 1.8e-003 # CTCCGCC GGCGGAG 343 218 4.2e-008 1.8e-003 letter-probability matrix: alength= 4 w= 7 nsites= 361 E= 1.8e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGARGGA DREME-20 # Word RC Word Pos Neg P-value E-value # BEST GGARGGA TCCYTCC 454 313 9.8e-008 4.1e-003 # GGAGGGA TCCCTCC 353 243 2.5e-006 1.0e-001 # GGAAGGA TCCTTCC 123 80 1.5e-003 6.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 487 E= 4.1e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.246407 0.000000 0.753593 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 795.53 seconds