# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 17340 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:46 PST 2017) # negatives: 17340 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:46 PST 2017) # host: indra # when: Wed Nov 22 12:59:22 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.233 C 0.266 G 0.268 T 0.233 MOTIF CAYGTGAY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAYGTGAY RTCACRTG 7484 178 8.2e-2376 3.7e-2371 # CACGTGAC GTCACGTG 3842 27 2.0e-1199 9.0e-1195 # CATGTGAC GTCACATG 2338 63 5.2e-633 2.4e-628 # CACGTGAT ATCACGTG 1627 14 9.2e-478 4.2e-473 # CATGTGAT ATCACATG 530 76 2.5e-086 1.1e-081 letter-probability matrix: alength= 4 w= 8 nsites= 7947 E= 3.7e-2371 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.623506 0.000000 0.376494 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.763307 0.000000 0.236693 MOTIF CACGTGBB DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CACGTGBB VVCACGTG 1325 173 5.5e-229 2.5e-224 # CACGTGGT ACCACGTG 435 27 2.9e-097 1.3e-092 # CACGTGGG CCCACGTG 427 30 2.6e-092 1.2e-087 # CACGTGGC GCCACGTG 380 37 7.3e-074 3.3e-069 # CACGTGTC GACACGTG 204 27 2.6e-035 1.2e-030 # CACGTGCT AGCACGTG 184 25 1.4e-031 6.4e-027 # CACGTGCC GGCACGTG 171 36 1.2e-022 5.3e-018 # CACGTGTT AACACGTG 124 26 7.2e-017 3.3e-012 # CACGTGCG CGCACGTG 88 16 1.5e-013 6.6e-009 # CACGTGTG CACACGTG 120 35 1.9e-012 8.6e-008 letter-probability matrix: alength= 4 w= 8 nsites= 1366 E= 2.5e-224 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.193265 0.592240 0.214495 0.000000 0.345534 0.301611 0.352855 MOTIF VGGAAR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST VGGAAR YTTCCB 7343 4871 5.2e-171 2.3e-166 # AGGAAG CTTCCT 2257 1304 1.3e-064 5.7e-060 # GGGAAA TTTCCC 1796 1044 8.8e-050 3.9e-045 # AGGAAA TTTCCT 1718 1015 3.2e-045 1.4e-040 # GGGAAG CTTCCC 2119 1340 8.3e-045 3.7e-040 # CGGAAG CTTCCG 787 548 1.4e-011 6.2e-007 # CGGAAA TTTCCG 405 331 3.2e-003 1.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 9560 E= 2.3e-166 0.438703 0.131172 0.430126 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.425314 0.000000 0.574686 0.000000 MOTIF GCCAATVR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GCCAATVR YBATTGGC 1223 272 3.5e-150 1.5e-145 # GCCAATCA TGATTGGC 432 57 1.5e-073 6.6e-069 # GCCAATGA TCATTGGC 324 61 3.8e-045 1.7e-040 # GCCAATGG CCATTGGC 290 70 1.5e-033 6.8e-029 # GCCAATAG CTATTGGC 96 29 6.7e-010 3.0e-005 # GCCAATCG CGATTGGC 63 16 4.6e-008 2.0e-003 # GCCAATAA TTATTGGC 64 39 8.7e-003 3.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1317 E= 1.5e-145 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.121488 0.406986 0.471526 0.000000 0.657555 0.000000 0.342445 0.000000 MOTIF TTATYW DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TTATYW WRATAA 3347 1786 5.4e-125 2.4e-120 # TTATCT AGATAA 1412 485 1.3e-110 5.6e-106 # TTATCA TGATAA 994 565 3.2e-029 1.4e-024 # TTATTT AAATAA 932 553 3.4e-024 1.5e-019 # TTATTA TAATAA 443 356 1.0e-003 4.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 3969 E= 2.4e-120 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.647014 0.000000 0.352986 0.368355 0.000000 0.000000 0.631645 MOTIF CYCCDCCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CYCCDCCC GGGHGGRG 2073 1026 3.9e-088 1.7e-083 # CCCCGCCC GGGCGGGG 656 227 1.8e-050 7.9e-046 # CCCCTCCC GGGAGGGG 504 238 1.4e-023 6.1e-019 # CTCCTCCC GGGAGGAG 388 192 8.4e-017 3.7e-012 # CCCCACCC GGGTGGGG 381 199 1.1e-014 4.7e-010 # CTCCGCCC GGGCGGAG 231 103 7.8e-013 3.4e-008 # CTCCACCC GGGTGGAG 198 141 1.1e-003 4.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 2417 E= 1.7e-083 0.000000 1.000000 0.000000 0.000000 0.000000 0.657427 0.000000 0.342573 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.235830 0.000000 0.390153 0.374017 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACMTGAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CACMTGAC GTCAKGTG 670 156 1.4e-078 6.1e-074 # CACATGAC GTCATGTG 436 63 7.6e-071 3.3e-066 # CACCTGAC GTCAGGTG 237 93 4.5e-016 2.0e-011 letter-probability matrix: alength= 4 w= 8 nsites= 686 E= 6.1e-074 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.651603 0.348397 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGAYTACA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST RGAYTACA TGTARTCY 485 136 6.0e-048 2.6e-043 # GGATTACA TGTAATCC 124 18 5.0e-021 2.2e-016 # AGACTACA TGTAGTCT 172 51 6.4e-017 2.8e-012 # GGACTACA TGTAGTCC 135 35 2.0e-015 8.8e-011 # AGATTACA TGTAATCT 55 32 8.8e-003 3.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 488 E= 2.6e-043 0.465164 0.000000 0.534836 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.633197 0.000000 0.366803 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGATTGGW DREME-9 # Word RC Word Pos Neg P-value E-value # BEST TGATTGGW WCCAATCA 416 113 1.3e-042 5.5e-038 # TGATTGGT ACCAATCA 288 59 6.0e-038 2.6e-033 # TGATTGGA TCCAATCA 137 55 1.3e-009 5.8e-005 letter-probability matrix: alength= 4 w= 8 nsites= 459 E= 5.5e-038 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.309368 0.000000 0.000000 0.690632 MOTIF AARATGGM DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AARATGGM KCCATYTT 602 234 2.6e-039 1.1e-034 # AAGATGGA TCCATCTT 212 52 1.5e-024 6.4e-020 # AAGATGGC GCCATCTT 172 73 9.5e-011 4.1e-006 # AAAATGGC GCCATTTT 107 50 3.0e-006 1.3e-001 # AAAATGGA TCCATTTT 121 60 3.2e-006 1.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 619 E= 1.1e-034 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.371567 0.000000 0.628433 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.542811 0.457189 0.000000 0.000000 MOTIF RGAAA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST RGAAA TTTCY 5150 4205 1.5e-030 6.6e-026 # AGAAA TTTCT 4202 3396 6.7e-026 2.9e-021 # GGAAA TTTCC 1328 1090 2.9e-007 1.2e-002 letter-probability matrix: alength= 4 w= 5 nsites= 6454 E= 6.6e-026 0.783545 0.000000 0.216455 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CNGCCTCC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CNGCCTCC GGAGGCNG 882 486 2.6e-028 1.1e-023 # CCGCCTCC GGAGGCGG 249 109 3.7e-014 1.6e-009 # CAGCCTCC GGAGGCTG 294 152 6.2e-012 2.7e-007 # CGGCCTCC GGAGGCCG 155 87 6.8e-006 3.0e-001 # CTGCCTCC GGAGGCAG 230 148 1.3e-005 5.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 937 E= 1.1e-023 0.000000 1.000000 0.000000 0.000000 0.314835 0.268943 0.165422 0.250800 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGCTR DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CAGCTR YAGCTG 2152 1567 1.6e-024 6.9e-020 # CAGCTG CAGCTG 1372 923 1.4e-022 6.1e-018 # CAGCTA TAGCTG 840 688 3.8e-005 1.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 2313 E= 6.9e-020 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.375703 0.000000 0.624297 0.000000 MOTIF CBCGTGAC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CBCGTGAC GTCACGVG 263 86 1.7e-022 7.4e-018 # CTCGTGAC GTCACGAG 100 22 2.1e-013 8.9e-009 # CGCGTGAC GTCACGCG 82 27 6.0e-008 2.6e-003 # CCCGTGAC GTCACGGG 81 37 3.1e-005 1.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 265 E= 7.4e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.305660 0.316981 0.377358 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GSCTGGR DREME-15 # Word RC Word Pos Neg P-value E-value # BEST GSCTGGR YCCAGSC 2275 1709 8.0e-022 3.4e-017 # GGCTGGG CCCAGCC 828 572 1.5e-012 6.6e-008 # GCCTGGG CCCAGGC 726 505 7.7e-011 3.3e-006 # GGCTGGA TCCAGCC 492 376 3.8e-005 1.6e+000 # GCCTGGA TCCAGGC 448 347 1.6e-004 7.0e+000 letter-probability matrix: alength= 4 w= 7 nsites= 2480 E= 3.4e-017 0.000000 0.000000 1.000000 0.000000 0.000000 0.466532 0.533468 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.370968 0.000000 0.629032 0.000000 MOTIF TGACTCAB DREME-16 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 502 249 3.2e-021 1.4e-016 # TGACTCAG CTGAGTCA 209 97 5.8e-011 2.5e-006 # TGACTCAC GTGAGTCA 176 91 9.8e-008 4.2e-003 # TGACTCAT ATGAGTCA 129 63 1.0e-006 4.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 532 E= 1.4e-016 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.332707 0.415414 0.251880 MOTIF AAAMAAAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AAAMAAAA TTTTKTTT 333 147 3.6e-018 1.5e-013 # AAAAAAAA TTTTTTTT 212 74 5.2e-017 2.2e-012 # AAACAAAA TTTTGTTT 138 75 8.9e-006 3.8e-001 letter-probability matrix: alength= 4 w= 8 nsites= 388 E= 1.5e-013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.628866 0.371134 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGGMGGGA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST GGGMGGGA TCCCKCCC 367 177 7.9e-017 3.4e-012 # GGGAGGGA TCCCTCCC 216 109 1.3e-009 5.4e-005 # GGGCGGGA TCCCGCCC 153 70 1.3e-008 5.4e-004 letter-probability matrix: alength= 4 w= 8 nsites= 371 E= 3.4e-012 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.582210 0.417790 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGACGTMA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST TGACGTMA TKACGTCA 97 16 1.2e-015 5.0e-011 # TGACGTCA TGACGTCA 77 8 1.3e-015 5.5e-011 # TGACGTAA TTACGTCA 22 8 8.0e-003 3.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 5.0e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.220000 0.780000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATTTW DREME-20 # Word RC Word Pos Neg P-value E-value # BEST TATTTW WAAATA 762 491 3.1e-015 1.3e-010 # TATTTT AAAATA 485 305 4.9e-011 2.1e-006 # TATTTA TAAATA 298 198 3.5e-006 1.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 803 E= 1.3e-010 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.381071 0.000000 0.000000 0.618929 MOTIF AACCASAG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST AACCASAG CTSTGGTT 296 140 2.2e-014 9.3e-010 # AACCAGAG CTCTGGTT 180 81 3.6e-010 1.5e-005 # AACCACAG CTGTGGTT 116 59 9.4e-006 4.0e-001 letter-probability matrix: alength= 4 w= 8 nsites= 296 E= 9.3e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.391892 0.608108 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCCATGTK DREME-22 # Word RC Word Pos Neg P-value E-value # BEST GCCATGTK MACATGGC 252 116 4.2e-013 1.8e-008 # GCCATGTT AACATGGC 126 46 3.9e-010 1.7e-005 # GCCATGTG CACATGGC 127 71 4.0e-005 1.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 254 E= 1.8e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 MOTIF GCGGCBGC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GCGGCBGC GCVGCCGC 506 307 8.3e-013 3.5e-008 # GCGGCGGC GCCGCCGC 289 164 1.8e-009 7.7e-005 # GCGGCTGC GCAGCCGC 146 88 8.6e-005 3.7e+000 # GCGGCCGC GCGGCCGC 118 74 8.9e-004 3.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 558 E= 3.5e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.206093 0.539427 0.254480 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TWTAWA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST TWTAWA TWTAWA 913 645 2.0e-012 8.5e-008 # TTTAAA TTTAAA 394 267 3.5e-007 1.5e-002 # TATAAA TTTATA 421 312 2.7e-005 1.1e+000 # TATATA TATATA 158 99 1.3e-004 5.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 979 E= 8.5e-008 0.000000 0.000000 0.000000 1.000000 0.371808 0.000000 0.000000 0.628192 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.620020 0.000000 0.000000 0.379980 1.000000 0.000000 0.000000 0.000000 MOTIF YTGGCCAR DREME-25 # Word RC Word Pos Neg P-value E-value # BEST YTGGCCAR YTGGCCAR 354 196 5.5e-012 2.3e-007 # CTGGCCAA TTGGCCAG 167 97 9.1e-006 3.9e-001 # CTGGCCAG CTGGCCAG 125 72 9.4e-005 4.0e+000 # TTGGCCAA TTGGCCAA 63 28 1.5e-004 6.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 356 E= 2.3e-007 0.000000 0.601124 0.000000 0.398876 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.426966 0.000000 0.573034 0.000000 MOTIF CAGAGSC DREME-26 # Word RC Word Pos Neg P-value E-value # BEST CAGAGSC GSCTCTG 1141 853 1.7e-011 7.1e-007 # CAGAGGC GCCTCTG 653 438 2.0e-011 8.5e-007 # CAGAGCC GGCTCTG 516 431 2.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1186 E= 7.1e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.438449 0.561551 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF SCGCGCGS DREME-27 # Word RC Word Pos Neg P-value E-value # BEST SCGCGCGS SCGCGCGS 397 236 5.5e-011 2.3e-006 # GCGCGCGC GCGCGCGC 180 90 2.0e-008 8.7e-004 # CCGCGCGC GCGCGCGG 213 137 2.6e-005 1.1e+000 # CCGCGCGG CCGCGCGG 80 48 2.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 477 E= 2.3e-006 0.000000 0.425577 0.574423 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.616352 0.383648 0.000000 MOTIF AGCCTCCY DREME-28 # Word RC Word Pos Neg P-value E-value # BEST AGCCTCCY RGGAGGCT 231 117 4.1e-010 1.7e-005 # AGCCTCCC GGGAGGCT 143 59 1.4e-009 6.0e-005 # AGCCTCCT AGGAGGCT 89 58 6.4e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 232 E= 1.7e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.616379 0.000000 0.383621 MOTIF TAAAATGR DREME-29 # Word RC Word Pos Neg P-value E-value # BEST TAAAATGR YCATTTTA 120 43 6.0e-010 2.5e-005 # TAAAATGA TCATTTTA 84 30 2.0e-007 8.6e-003 # TAAAATGG CCATTTTA 36 14 1.3e-003 5.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 2.5e-005 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 MOTIF ATTAGCCR DREME-30 # Word RC Word Pos Neg P-value E-value # BEST ATTAGCCR YGGCTAAT 88 25 9.7e-010 4.1e-005 # ATTAGCCA TGGCTAAT 55 18 8.3e-006 3.5e-001 # ATTAGCCG CGGCTAAT 33 7 2.1e-005 8.9e-001 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 4.1e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.629213 0.000000 0.370787 0.000000 MOTIF CGCAKGCG DREME-31 # Word RC Word Pos Neg P-value E-value # BEST CGCAKGCG CGCMTGCG 164 73 1.4e-009 6.1e-005 # CGCAGGCG CGCCTGCG 124 61 2.0e-006 8.4e-002 # CGCATGCG CGCATGCG 44 13 2.3e-005 9.9e-001 letter-probability matrix: alength= 4 w= 8 nsites= 171 E= 6.1e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.742690 0.257310 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCTGAGAY DREME-32 # Word RC Word Pos Neg P-value E-value # BEST GCTGAGAY RTCTCAGC 189 93 4.9e-009 2.1e-004 # GCTGAGAC GTCTCAGC 110 52 2.9e-006 1.2e-001 # GCTGAGAT ATCTCAGC 79 41 3.3e-004 1.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 189 E= 2.1e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.582011 0.000000 0.417989 MOTIF SCCRGGA DREME-33 # Word RC Word Pos Neg P-value E-value # BEST SCCRGGA TCCYGGS 1253 964 1.2e-010 5.2e-006 # GCCGGGA TCCCGGC 254 180 2.0e-004 8.7e+000 # GCCAGGA TCCTGGC 367 282 4.3e-004 1.8e+001 # CCCGGGA TCCCGGG 222 157 4.6e-004 2.0e+001 # CCCAGGA TCCTGGG 451 366 1.5e-003 6.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1316 E= 5.2e-006 0.000000 0.520517 0.479483 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.633739 0.000000 0.366261 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGAASTG DREME-34 # Word RC Word Pos Neg P-value E-value # BEST CAGAASTG CASTTCTG 303 178 5.2e-009 2.2e-004 # CAGAACTG CAGTTCTG 144 75 1.7e-006 7.2e-002 # CAGAAGTG CACTTCTG 160 104 3.3e-004 1.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 306 E= 2.2e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.470588 0.529412 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RAACTACA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST RAACTACA TGTAGTTY 136 58 9.6e-009 4.1e-004 # GAACTACA TGTAGTTC 68 26 8.4e-006 3.6e-001 # AAACTACA TGTAGTTT 70 32 1.0e-004 4.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 4.1e-004 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGAGAGA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST GAGAGAGA TCTCTCTC 217 118 3.0e-008 1.3e-003 # GAGAGAGA TCTCTCTC 217 118 3.0e-008 1.3e-003 letter-probability matrix: alength= 4 w= 8 nsites= 250 E= 1.3e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATYCCAG DREME-37 # Word RC Word Pos Neg P-value E-value # BEST AATYCCAG CTGGRATT 141 64 3.6e-008 1.5e-003 # AATCCCAG CTGGGATT 87 34 7.5e-007 3.2e-002 # AATTCCAG CTGGAATT 54 30 5.8e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 142 E= 1.5e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.619718 0.000000 0.380282 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATGTGGCY DREME-38 # Word RC Word Pos Neg P-value E-value # BEST ATGTGGCY RGCCACAT 186 96 4.0e-008 1.7e-003 # ATGTGGCC GGCCACAT 101 50 1.9e-005 8.2e-001 # ATGTGGCT AGCCACAT 88 47 2.6e-004 1.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 190 E= 1.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.536842 0.000000 0.463158 MOTIF CATTGGTC DREME-39 # Word RC Word Pos Neg P-value E-value # BEST CATTGGTC GACCAATG 110 43 2.8e-008 1.2e-003 # CATTGGTC GACCAATG 110 43 2.8e-008 1.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARGTCAC DREME-40 # Word RC Word Pos Neg P-value E-value # BEST ARGTCAC GTGACYT 556 394 5.5e-008 2.3e-003 # AGGTCAC GTGACCT 306 220 9.1e-005 3.9e+000 # AAGTCAC GTGACTT 255 178 1.1e-004 4.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 565 E= 2.3e-003 1.000000 0.000000 0.000000 0.000000 0.454867 0.000000 0.545133 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGCAGTKA DREME-41 # Word RC Word Pos Neg P-value E-value # BEST TGCAGTKA TMACTGCA 220 123 7.9e-008 3.3e-003 # TGCAGTGA TCACTGCA 145 86 6.0e-005 2.5e+000 # TGCAGTTA TAACTGCA 77 37 1.1e-004 4.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 224 E= 3.3e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.656250 0.343750 1.000000 0.000000 0.000000 0.000000 MOTIF CATATGAC DREME-42 # Word RC Word Pos Neg P-value E-value # BEST CATATGAC GTCATATG 87 31 1.2e-007 5.0e-003 # CATATGAC GTCATATG 87 31 1.2e-007 5.0e-003 letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 5.0e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCACGCCY DREME-43 # Word RC Word Pos Neg P-value E-value # BEST CCACGCCY RGGCGTGG 199 109 1.5e-007 6.2e-003 # CCACGCCC GGGCGTGG 139 79 2.8e-005 1.2e+000 # CCACGCCT AGGCGTGG 60 30 1.0e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 206 E= 6.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.703883 0.000000 0.296117 MOTIF ACACACAS DREME-44 # Word RC Word Pos Neg P-value E-value # BEST ACACACAS STGTGTGT 332 214 2.0e-007 8.6e-003 # ACACACAC GTGTGTGT 215 131 3.3e-006 1.4e-001 # ACACACAG CTGTGTGT 146 104 4.6e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 487 E= 8.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.714579 0.285421 0.000000 MOTIF AGATAGSA DREME-45 # Word RC Word Pos Neg P-value E-value # BEST AGATAGSA TSCTATCT 138 69 8.6e-007 3.7e-002 # AGATAGGA TCCTATCT 70 35 4.0e-004 1.7e+001 # AGATAGCA TGCTATCT 68 34 4.8e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 138 E= 3.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.492754 0.507246 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 3439.31 seconds