Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/USF2-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Database contains 3542 sequences, 1771000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TCGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 GCCATATGTT
M0178_1.02 10 AACAGCTGTT
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGG
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTG
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GGTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 AATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCGGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AATAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATTACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATT
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CCAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCCAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 ACCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 GTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTCTT
M1601_1.02 9 ATTGTTCTC
M1605_1.02 10 ATTCATCTTT
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACACTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATGATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATTTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCT
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAAA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCCA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 GTGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCAGC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCGGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGACTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGCGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCACCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGT
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTAGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 CTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAA
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CACAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACAGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 TTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAT
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGCCCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATCCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 GGTTGGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGTCACGTGCAGAGGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTGTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCCC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTT
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GATAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAGGGCGCGAAAC
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAACG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 GACCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATG
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTATT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 CTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTC
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ACTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATCATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 CCATTAAACT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CGTAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGAGTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TCTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTTTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAAGTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAA
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCCAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAGA
M6459_1.02 14 AACCACAAACCCCA
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 CCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTCTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCCCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAG
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 CCCCAGGTGG
M6529_1.02 7 TCTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAGTCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.228 C 0.272 G 0.272 T 0.228

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M6411_1.02 PAX8 chr12 - 129467450 129467463 2.34e-07 0.47 GTGACTCAAGCATG
M6411_1.02 PAX8 chr1 - 19300411 19300424 2.72e-07 0.47 TTCACTCAAGCATG
M6411_1.02 PAX8 chr16 + 14321778 14321791 5.46e-07 0.627 gtgactcaagcagg
M6411_1.02 PAX8 chr20 + 50325590 50325603 1.29e-06 0.852 ttcactgaagtata
M6411_1.02 PAX8 chr11 + 73983700 73983713 1.57e-06 0.852 GTAACTGACGCGTG
M6411_1.02 PAX8 chr8 + 10705121 10705134 1.7e-06 0.852 gtgattggagcaga
M6411_1.02 PAX8 chr6 + 137866972 137866985 2.13e-06 0.852 GTGACTCACGCGGG
M6411_1.02 PAX8 chr1 + 182840070 182840083 2.29e-06 0.852 GTGACTGGAGTGTG
M6411_1.02 PAX8 chr7 + 140200423 140200436 2.62e-06 0.852 TTCATTCACGCAGA
M6411_1.02 PAX8 chr11 - 102653848 102653861 2.91e-06 0.852 GTGACTGACGTGTG
M6411_1.02 PAX8 chr7 + 65429939 65429952 2.91e-06 0.852 GTGACTGACGTGTg
M6411_1.02 PAX8 chr16 + 30355526 30355539 3.17e-06 0.852 GTCATTCAAGCAGT
M6411_1.02 PAX8 chr14 - 75176406 75176419 3.67e-06 0.852 GTGACTGGCGCGTA
M6411_1.02 PAX8 chr2 - 61537317 61537330 3.78e-06 0.852 GTCATTCGCGTGTG
M6411_1.02 PAX8 chr17 - 51260337 51260350 3.81e-06 0.852 GTGACTGGAGTGGA
M6411_1.02 PAX8 chr8 + 9415818 9415831 4.23e-06 0.852 CTGACTGAAGCAGA
M6411_1.02 PAX8 chr7 + 65430176 65430189 4.75e-06 0.852 CTGATTGACGCGTG
M6411_1.02 PAX8 chr3 + 129690672 129690685 4.85e-06 0.852 ATCACTGAAGCATA
M6411_1.02 PAX8 chr11 + 62854275 62854288 5.03e-06 0.852 CTCATTGGAGCAGA
M6411_1.02 PAX8 chr17 - 46191974 46191987 5.43e-06 0.852 GTCACTGGAGCATT
M6411_1.02 PAX8 chr21 + 31490759 31490772 5.59e-06 0.852 ttcattcaagtgtt
M6411_1.02 PAX8 chr17 + 1203714 1203727 5.63e-06 0.852 GTGACTCGCGCAGG
M6411_1.02 PAX8 chr15 + 75335972 75335985 5.68e-06 0.852 CTCACTCGAGCAGG
M6411_1.02 PAX8 chr15 + 75758493 75758506 6.4e-06 0.92 CTCACTCGAGCAGA
M6411_1.02 PAX8 chr10 - 100373499 100373512 7.08e-06 0.977 CTGATTGGAGCAGA
M6411_1.02 PAX8 chr11 + 76788431 76788444 7.4e-06 0.982 GTGACTGAAGAATG
M6411_1.02 PAX8 chrX - 42028469 42028482 9.21e-06 1 CTCATTGGAGTAGA
M6411_1.02 PAX8 chr11 - 12116449 12116462 9.78e-06 1 GCCACTGGAGCGTG
M6411_1.02 PAX8 chr10 + 86753550 86753563 1.01e-05 1 TTCACTGAAGAGGA
M6411_1.02 PAX8 chr18 + 3218162 3218175 1.16e-05 1 TCCACTGAAGCAGG
M6411_1.02 PAX8 chr10 + 63132849 63132862 1.19e-05 1 ATCATTCGAGTGTG
M6411_1.02 PAX8 chr1 + 198159459 198159472 1.22e-05 1 GTGACTGAGGCGGG
M6411_1.02 PAX8 chr7 + 111708481 111708494 1.26e-05 1 TTCAATGAAGTATA
M6411_1.02 PAX8 chr1 + 37288873 37288886 1.35e-05 1 ttcattcacgtgtt
M6411_1.02 PAX8 chr11 + 62042281 62042294 1.35e-05 1 ATCACTGGAGTGTG
M6411_1.02 PAX8 chr1 - 28914157 28914170 1.38e-05 1 GTAACTCGCGTAGA
M6411_1.02 PAX8 chr6 - 27893655 27893668 1.45e-05 1 GTCATTGACGAAGG
M6411_1.02 PAX8 chr9 + 136949954 136949967 1.49e-05 1 ctcactggcgtgtg
M6411_1.02 PAX8 chr1 + 154220619 154220632 1.53e-05 1 GTGACTCAGGCAGG
M6411_1.02 PAX8 chr11 + 62081991 62082004 1.57e-05 1 TTAACTCAAGAATA
M6411_1.02 PAX8 chr12 + 57522145 57522158 1.64e-05 1 GTGACTGGAGTGGT
M6411_1.02 PAX8 chr1 - 94677909 94677922 1.66e-05 1 GTGATTGGACCAGG
M6411_1.02 PAX8 chr9 + 121249761 121249774 1.66e-05 1 gtgattggaccagg
M6411_1.02 PAX8 chr19 + 47256358 47256371 1.71e-05 1 GTAATTCAGGCAGA
M6411_1.02 PAX8 chr22 - 21982259 21982272 1.73e-05 1 GTAAATGAAGTAGG
M6411_1.02 PAX8 chr1 - 28647901 28647914 1.73e-05 1 ATGACTGAAGTAGA
M6411_1.02 PAX8 chr11 - 102654069 102654082 1.74e-05 1 GTGACTGATGTGTG
M6411_1.02 PAX8 chr7 - 156844603 156844616 1.74e-05 1 TTCATTCAGGTGTA
M6411_1.02 PAX8 chr11 - 62841490 62841503 1.77e-05 1 TTGAATGACGCGTG
M6411_1.02 PAX8 chr20 + 50468207 50468220 1.95e-05 1 gtgactgaggtatg
M6411_1.02 PAX8 chr1 + 22056285 22056298 1.96e-05 1 CTCATTGAAGTAGT
M6411_1.02 PAX8 chr7 + 65430438 65430451 1.96e-05 1 GTAATTGACGTGGT
M6411_1.02 PAX8 chr6 - 28542947 28542960 2e-05 1 GTGATTCAGGTGGG
M6411_1.02 PAX8 chr17 + 36601394 36601407 2e-05 1 TTCACTGGTGCGTG
M6411_1.02 PAX8 chr6 - 2667602 2667615 2.05e-05 1 GTCACTGGGGCAGG
M6411_1.02 PAX8 chr22 + 28873952 28873965 2.05e-05 1 GTGAATGGAGTGTA
M6411_1.02 PAX8 chr19 - 55408280 55408293 2.1e-05 1 GTCATTGGCCCATG
M6411_1.02 PAX8 chr6 + 147212030 147212043 2.1e-05 1 CTCATTCAAGAGGA
M6411_1.02 PAX8 chr19 + 40231702 40231715 2.14e-05 1 GTGACTCAAGCACG
M6411_1.02 PAX8 chr12 + 123364764 123364777 2.14e-05 1 GCGACTGGAgcgga
M6411_1.02 PAX8 chr12 + 131493543 131493556 2.16e-05 1 GTGATTGGTGCGGG
M6411_1.02 PAX8 chr8 - 132775305 132775318 2.21e-05 1 GTGACTCACGAGGG
M6411_1.02 PAX8 chr11 + 17407690 17407703 2.25e-05 1 gtgattcaggtgga
M6411_1.02 PAX8 chr19 + 5452907 5452920 2.27e-05 1 gTTACTCAAGTGTG
M6411_1.02 PAX8 chr1 + 58437920 58437933 2.38e-05 1 TTGACTCATGCAGG
M6411_1.02 PAX8 chr19 + 46530923 46530936 2.4e-05 1 gtgattggggcagg
M6411_1.02 PAX8 chr7 - 72006978 72006991 2.44e-05 1 CTCATTGGAGTGTT
M6411_1.02 PAX8 chr19 + 19489198 19489211 2.46e-05 1 GTGACTGGAGCCTG
M6411_1.02 PAX8 chr12 + 54159227 54159240 2.46e-05 1 CTCACTGAAGAAGG
M6411_1.02 PAX8 chr12 - 131164437 131164450 2.52e-05 1 GTGATTGGTGCAGG
M6411_1.02 PAX8 chr12 + 131493661 131493674 2.52e-05 1 gtgattggtgcagg
M6411_1.02 PAX8 chr13 + 20520552 20520565 2.58e-05 1 GTGATTGGACTGGG
M6411_1.02 PAX8 chr5 + 177390475 177390488 2.6e-05 1 gtaattgaggtagg
M6411_1.02 PAX8 chr22 - 40651839 40651852 2.71e-05 1 GTAACTGACCCGGA
M6411_1.02 PAX8 chr5 - 134007853 134007866 2.71e-05 1 GTTATTGAAGTGGA
M6411_1.02 PAX8 chr14 - 23320802 23320815 2.73e-05 1 GTGAATGAAGCATT
M6411_1.02 PAX8 chr7 - 44607137 44607150 2.77e-05 1 GCAACTCGAGCAGG
M6411_1.02 PAX8 chr12 - 131164319 131164332 2.81e-05 1 GTGATTGGTGCAGA
M6411_1.02 PAX8 chr16 + 78796258 78796271 2.81e-05 1 ttcactgacccaga
M6411_1.02 PAX8 chr15 - 78353299 78353312 2.88e-05 1 GTGACTCACGAAGA
M6411_1.02 PAX8 chr14 - 101948250 101948263 2.9e-05 1 GTGATTGGCCCATG
M6411_1.02 PAX8 chr19 + 45501581 45501594 2.93e-05 1 gtaattgaagagtt
M6411_1.02 PAX8 chr9 + 1018473 1018486 3e-05 1 GTAACTGGACTGTA
M6411_1.02 PAX8 chr3 + 186523301 186523314 3e-05 1 CCCACTGAAGCAGA
M6411_1.02 PAX8 chr16 - 29884359 29884372 3.06e-05 1 GTGATTCGCCCATG
M6411_1.02 PAX8 chr6 - 31739745 31739758 3.06e-05 1 TTGATTGGCGCAGT
M6411_1.02 PAX8 chr4 - 83757321 83757334 3.06e-05 1 GTGATCCAAGCAGA
M6411_1.02 PAX8 chr16 - 8995994 8996007 3.09e-05 1 GTGACTCACGCCTG
M6411_1.02 PAX8 chr3 - 10248285 10248298 3.09e-05 1 GCCACTCACGTGGG
M6411_1.02 PAX8 chr12 + 64609000 64609013 3.09e-05 1 gtgaatcacgtggg
M6411_1.02 PAX8 chr6 + 35920036 35920049 3.21e-05 1 TTCATTCAAGAATT
M6411_1.02 PAX8 chr1 - 37947106 37947119 3.23e-05 1 TTGACTCGGGCATG
M6411_1.02 PAX8 chr19 - 38619053 38619066 3.23e-05 1 GCAATTGGCGCGTG
M6411_1.02 PAX8 chr5 - 134007976 134007989 3.31e-05 1 GTCATTCGCCCAGA
M6411_1.02 PAX8 chr1 + 27013087 27013100 3.31e-05 1 GTGATTGGCCCGGG
M6411_1.02 PAX8 chr10 + 49679408 49679421 3.31e-05 1 ctgattcaaccaga
M6411_1.02 PAX8 chr8 + 123447878 123447891 3.36e-05 1 GTGACTGGTGTGTG
M6411_1.02 PAX8 chr12 - 132279291 132279304 3.38e-05 1 TTCATTGGCCCATA
M6411_1.02 PAX8 chr8 + 102751394 102751407 3.41e-05 1 gtaattcacgccta
M6411_1.02 PAX8 chr3 - 141308565 141308578 3.46e-05 1 CTAATTGAGGCATG
M6411_1.02 PAX8 chr21 - 37366530 37366543 3.49e-05 1 GTGATTCGCCCGGG
M6411_1.02 PAX8 chr15 - 67520970 67520983 3.49e-05 1 GTAACTCGGGCAGG
M6411_1.02 PAX8 chr22 - 21641810 21641823 3.52e-05 1 GTCACTGAATCGGG
M6411_1.02 PAX8 chr22 - 21641810 21641823 3.52e-05 1 GTCACTGAATCGGG
M6411_1.02 PAX8 chr2 - 39783103 39783116 3.57e-05 1 GTGATTGAATCATG
M6411_1.02 PAX8 chr1 - 45337806 45337819 3.57e-05 1 TTTACTGAAGTATG
M6411_1.02 PAX8 chr16 + 58226161 58226174 3.59e-05 1 gtgacccaagcaga
M6411_1.02 PAX8 chr20 + 62146192 62146205 3.59e-05 1 CTCACTCACGTGTT
M6411_1.02 PAX8 chr11 + 69594050 69594063 3.59e-05 1 gtgacccaagcaga
M6411_1.02 PAX8 chr6 - 27288907 27288920 3.62e-05 1 GACATTGAAGTGTA
M6411_1.02 PAX8 chr10 - 75175077 75175090 3.62e-05 1 CTCATTCAACTGGA
M6411_1.02 PAX8 chr12 - 124496796 124496809 3.68e-05 1 GTCACTGGCCCAGA
M6411_1.02 PAX8 chr5 - 2131676 2131689 3.72e-05 1 GTCACTGGCGAAGA
M6411_1.02 PAX8 chr11 + 102654197 102654210 3.78e-05 1 GTCATTAACGTATA
M6411_1.02 PAX8 chr13 - 114238029 114238042 3.81e-05 1 GTGACTGGAGCACG
M6411_1.02 PAX8 chr6 - 85678404 85678417 3.83e-05 1 TTAATTGGGGCGGA
M6411_1.02 PAX8 chr6 + 16215699 16215712 3.83e-05 1 CTGACTCATGCATG
M6411_1.02 PAX8 chr19 - 45501892 45501905 3.89e-05 1 TTGAATGGAGTGGA
M6411_1.02 PAX8 chr1 - 203320444 203320457 3.89e-05 1 TTCACTGGTGTGTA
M6411_1.02 PAX8 chr7 - 105014839 105014852 3.92e-05 1 TTCACTCAAGCGGC
M6411_1.02 PAX8 chr16 - 84138603 84138616 3.95e-05 1 TTCATCGAAGTATA
M6411_1.02 PAX8 chr4 - 1309243 1309256 3.98e-05 1 ATCACTCAAGAATG
M6411_1.02 PAX8 chr1 - 67137387 67137400 3.98e-05 1 GTCATTCAACAATG
M6411_1.02 PAX8 chr1 + 212988551 212988564 3.98e-05 1 CTGAATGAAGTGGG
M6411_1.02 PAX8 chr6 + 13814439 13814452 4.03e-05 1 TTCACTGGCCCGGG
M6411_1.02 PAX8 chr6 + 36594673 36594686 4.03e-05 1 CTCATTGGGGCATG
M6411_1.02 PAX8 chr1 - 153967974 153967987 4.21e-05 1 GTGACTGGAGCACA
M6411_1.02 PAX8 chr3 - 12797568 12797581 4.25e-05 1 CTCATTGGACCAGA
M6411_1.02 PAX8 chr16 + 4894970 4894983 4.3e-05 1 gtgattggtgtagg
M6411_1.02 PAX8 chr17 - 40068878 40068891 4.39e-05 1 CTCACTGATGTGTA
M6411_1.02 PAX8 chr19 + 46736994 46737007 4.39e-05 1 GTCACTGTCGCAGG
M6411_1.02 PAX8 chr6 + 27288785 27288798 4.43e-05 1 GTTACTGGAGTGTA
M6411_1.02 PAX8 chr12 + 122750136 122750149 4.43e-05 1 gtgactggcccagg
M6411_1.02 PAX8 chr22 - 23071688 23071701 4.46e-05 1 TGCACTCAAGCGGG
M6411_1.02 PAX8 chr17 + 62965770 62965783 4.49e-05 1 GTGACCGAAGTGGG
M6411_1.02 PAX8 chr5 + 112742456 112742469 4.52e-05 1 ctgactgaggcagg
M6411_1.02 PAX8 chr12 - 54324925 54324938 4.56e-05 1 CTCATTGGGGCGGG
M6411_1.02 PAX8 chr22 - 19771995 19772008 4.65e-05 1 GTGAATGAAGAGTA
M6411_1.02 PAX8 chr11 - 126211739 126211752 4.65e-05 1 GTGACTCGCCCAGG
M6411_1.02 PAX8 chr2 + 169415315 169415328 4.65e-05 1 ttcattcacgtctg
M6411_1.02 PAX8 chr15 - 90588591 90588604 4.75e-05 1 TTGACTGGCCCATG
M6411_1.02 PAX8 chr1 - 167985096 167985109 4.78e-05 1 GTAACTGAATCATG
M6411_1.02 PAX8 chr17 - 19648821 19648834 4.85e-05 1 TTCACTCGCCCAGG
M6411_1.02 PAX8 chr13 + 51453060 51453073 4.85e-05 1 TTAACTCGGGCAGG
M6411_1.02 PAX8 chr12 - 46393052 46393065 4.88e-05 1 TTAATTCGTGTGTG
M6411_1.02 PAX8 chrX + 54529886 54529899 4.92e-05 1 CTGATTCGGGCGTG
M6411_1.02 PAX8 chr16 + 15643628 15643641 4.98e-05 1 TTAAATGGCGCATA
M6411_1.02 PAX8 chr6 - 41283867 41283880 5.02e-05 1 CTCATTGACCTGTG
M6411_1.02 PAX8 chr11 - 113875920 113875933 5.02e-05 1 TTAACTCGCCCGTG
M6411_1.02 PAX8 chr1 + 23201087 23201100 5.09e-05 1 ctgattggaccagg
M6411_1.02 PAX8 chr16 + 23519467 23519480 5.09e-05 1 ctgattggaccagg
M6411_1.02 PAX8 chr1 - 27052721 27052734 5.09e-05 1 CTGATTGGACCAGG
M6411_1.02 PAX8 chr16 - 84537234 84537247 5.09e-05 1 CTGATTGGACCAGG
M6411_1.02 PAX8 chr14 + 102524771 102524784 5.09e-05 1 ctgattggaccagg
M6411_1.02 PAX8 chr6 + 6657396 6657409 5.16e-05 1 gtaacccgagcatg
M6411_1.02 PAX8 chr12 - 101924861 101924874 5.16e-05 1 GTGACTCACGTCTG
M6411_1.02 PAX8 chr22 + 19628407 19628420 5.2e-05 1 gtgaaTGAAGTGGT
M6411_1.02 PAX8 chr4 - 83013281 83013294 5.2e-05 1 CTCACTCAAGCACA
M6411_1.02 PAX8 chr8 - 103021220 103021233 5.2e-05 1 CTCACTGACCCAGG
M6411_1.02 PAX8 chr1 + 45381365 45381378 5.23e-05 1 tggactcaagcatg
M6411_1.02 PAX8 chr16 - 85571076 85571089 5.23e-05 1 GTCACTGGAGTACA
M6411_1.02 PAX8 chr1 - 65480914 65480927 5.27e-05 1 TTTATTGGAGTGTA
M6411_1.02 PAX8 chr19 - 45326336 45326349 5.3e-05 1 GTCACTGGCCTGGA
M6411_1.02 PAX8 chr20 + 47181390 47181403 5.3e-05 1 ctcattctagcagg
M6411_1.02 PAX8 chr3 + 38137730 38137743 5.34e-05 1 CTAACTGGAGAATG
M6411_1.02 PAX8 chr22 - 22168518 22168531 5.37e-05 1 GTCATTCAGGAATG
M6411_1.02 PAX8 chr14 + 45084095 45084108 5.46e-05 1 GACACTGACGCATG
M6411_1.02 PAX8 chr2 - 99490337 99490350 5.49e-05 1 GTGACCGGAGCAGG
M6411_1.02 PAX8 chr11 - 46723008 46723021 5.56e-05 1 TTCACTCAACAGTG
M6411_1.02 PAX8 chr2 + 54429908 54429921 5.6e-05 1 ctgattggaccaga
M6411_1.02 PAX8 chr16 - 57686740 57686753 5.6e-05 1 CTGATTGGACCAGA
M6411_1.02 PAX8 chr9 - 132669936 132669949 5.6e-05 1 GTCACCCACGCAGA
M6411_1.02 PAX8 chr1 - 186112548 186112561 5.6e-05 1 GTGACTCAATCAGG
M6411_1.02 PAX8 chr3 + 105614587 105614600 5.64e-05 1 CTTATTCAAGTGTG
M6411_1.02 PAX8 chr7 - 107322538 107322551 5.72e-05 1 GTCATTCCAGTGGG
M6411_1.02 PAX8 chr2 - 65523293 65523306 5.76e-05 1 GTGACCCACGCATA
M6411_1.02 PAX8 chr1 - 27608571 27608584 5.79e-05 1 CTAACTCAACTGGG
M6411_1.02 PAX8 chr1 - 52366354 52366367 5.88e-05 1 CTCATTGGAGCCGG
M6411_1.02 PAX8 chr19 - 48190559 48190572 5.92e-05 1 GCCAATCAAGTGTG
M6411_1.02 PAX8 chr1 - 182259315 182259328 5.95e-05 1 GTAACTGAAGCCTT
M6411_1.02 PAX8 chr1 + 3900402 3900415 6e-05 1 GACACTGGAGCAGG
M6411_1.02 PAX8 chr22 + 21450957 21450970 6e-05 1 ctCACTGGGGCAGG
M6411_1.02 PAX8 chr1 - 186112567 186112580 6e-05 1 TCCATTCAAGAATG
M6411_1.02 PAX8 chr1 - 233658873 233658886 6e-05 1 CTCACTCACCCAGA
M6411_1.02 PAX8 chr16 + 4847326 4847339 6.04e-05 1 CCCATTGGAGTGGG
M6411_1.02 PAX8 chr12 - 117005523 117005536 6.07e-05 1 GTGACTCCAGCAGG
M6411_1.02 PAX8 chr12 - 131194491 131194504 6.07e-05 1 GCCATTCAACCAGA
M6411_1.02 PAX8 chr9 - 132945136 132945149 6.12e-05 1 TTCACCCACGCGGG
M6411_1.02 PAX8 chr17 + 40100679 40100692 6.16e-05 1 GGCACTGGAGCAGG
M6411_1.02 PAX8 chr17 - 58659132 58659145 6.16e-05 1 GTGATTGAACTAGT
M6411_1.02 PAX8 chr18 - 26226084 26226097 6.29e-05 1 TTCAATCACGCATT
M6411_1.02 PAX8 chr3 - 33732743 33732756 6.29e-05 1 GTGATTGGATCATG
M6411_1.02 PAX8 chr7 + 102081385 102081398 6.29e-05 1 gtgattggatcatg
M6411_1.02 PAX8 chr8 + 10671657 10671670 6.37e-05 1 GTCATTGAAGACTA
M6411_1.02 PAX8 chr21 - 37449319 37449332 6.37e-05 1 GTCATTGGACTATT
M6411_1.02 PAX8 chr5 + 173867343 173867356 6.54e-05 1 ttaactgaatCATG
M6411_1.02 PAX8 chr1 + 114820771 114820784 6.58e-05 1 TCCATTCAAGAATA
M6411_1.02 PAX8 chr6 + 36594429 36594442 6.63e-05 1 CTCATCGGAGCGTG
M6411_1.02 PAX8 chr6 + 36594314 36594327 6.67e-05 1 GTGATTCCAGTATG
M6411_1.02 PAX8 chr20 + 48725778 48725791 6.72e-05 1 gtcattggatcaga
M6411_1.02 PAX8 chr9 - 129069469 129069482 6.9e-05 1 CTGACTGGGGCGGG
M6411_1.02 PAX8 chr12 - 124804233 124804246 6.95e-05 1 TTCACTCCAGCAGA
M6411_1.02 PAX8 chr17 - 29069841 29069854 6.99e-05 1 TTCATTGGCGCACG
M6411_1.02 PAX8 chr2 - 2860601 2860614 7.04e-05 1 TTCACTCTCGTGTG
M6411_1.02 PAX8 chr5 + 177116984 177116997 7.04e-05 1 CTGATTGGCCCGTG
M6411_1.02 PAX8 chr5 + 36725417 36725430 7.09e-05 1 gtcattgactcagg
M6411_1.02 PAX8 chr5 - 149960905 149960918 7.09e-05 1 CTGACTGAGGTGGA
M6411_1.02 PAX8 chr14 - 64503899 64503912 7.13e-05 1 GCCACTGAGGCGGG
M6411_1.02 PAX8 chr19 - 49151747 49151760 7.18e-05 1 CCAACTCAAGTAGG
M6411_1.02 PAX8 chr12 + 121352304 121352317 7.18e-05 1 GGGATTGAAGTAGA
M6411_1.02 PAX8 chr1 - 28456394 28456407 7.23e-05 1 GTGACTGGATCATG
M6411_1.02 PAX8 chr8 - 123041592 123041605 7.23e-05 1 GTCACCCACGTGGG
M6411_1.02 PAX8 chr11 - 65487899 65487912 7.28e-05 1 TGCATTGGAGCAGG
M6411_1.02 PAX8 chr9 - 94166162 94166175 7.28e-05 1 CTGATTGAAGTGCG
M6411_1.02 PAX8 chr16 - 86181788 86181801 7.38e-05 1 CTCACTGACCTGGG
M6411_1.02 PAX8 chr22 + 19762527 19762540 7.43e-05 1 GTCACTGAGCCAGG
M6411_1.02 PAX8 chr22 - 37291922 37291935 7.43e-05 1 GTCACTGAGCCAGG
M6411_1.02 PAX8 chr10 + 72889878 72889891 7.43e-05 1 gccactgaactgta
M6411_1.02 PAX8 chr10 + 72889878 72889891 7.43e-05 1 gccactgaactgta
M6411_1.02 PAX8 chr22 - 21594082 21594095 7.48e-05 1 GGCACTCACGCAGG
M6411_1.02 PAX8 chr22 - 35156559 35156572 7.48e-05 1 TTGATTGGCCTGGG
M6411_1.02 PAX8 chr11 - 44066105 44066118 7.48e-05 1 GCCACTCAGGCGGG
M6411_1.02 PAX8 chrX + 71365962 71365975 7.48e-05 1 GTGACTCGAGCAGC
M6411_1.02 PAX8 chr7 + 99472735 99472748 7.48e-05 1 TTGATTGGCCTGGG
M6411_1.02 PAX8 chr1 + 164745976 164745989 7.48e-05 1 GTCACTGACCTGTT
M6411_1.02 PAX8 chr10 + 48306251 48306264 7.52e-05 1 ATCACTCAGGTGTG
M6411_1.02 PAX8 chr12 + 53004553 53004566 7.52e-05 1 ctaattaacgcgtg
M6411_1.02 PAX8 chr10 + 71860626 71860639 7.52e-05 1 GTCACTGTAGCAGT
M6411_1.02 PAX8 chr6 + 105992493 105992506 7.52e-05 1 ATCACTCAGGTGTG
M6411_1.02 PAX8 chr3 + 197031663 197031676 7.52e-05 1 GTCATTCAGCTGTG
M6411_1.02 PAX8 chr2 - 168851672 168851685 7.57e-05 1 GTCATTGAAACATG
M6411_1.02 PAX8 chr17 - 45309631 45309644 7.63e-05 1 GTGATTGGACAGTG
M6411_1.02 PAX8 chr9 + 136966295 136966308 7.63e-05 1 gtcactcaggagga
M6411_1.02 PAX8 chr18 - 3644110 3644123 7.68e-05 1 GTCATTGCCGCAGG
M6411_1.02 PAX8 chr1 - 36224500 36224513 7.73e-05 1 CTCACTCACCTGGG
M6411_1.02 PAX8 chr6 - 37242829 37242842 7.73e-05 1 GTCACTGGGGCAGT
M6411_1.02 PAX8 chr17 + 39200250 39200263 7.78e-05 1 GAAATTGGAGCAGG
M6411_1.02 PAX8 chr3 + 42489367 42489380 7.78e-05 1 ctcattggcccagg
M6411_1.02 PAX8 chr12 + 117377817 117377830 7.78e-05 1 TAAACTGAAGCAGA
M6411_1.02 PAX8 chr9 - 127396900 127396913 7.78e-05 1 CCAATTGGAGTGTA
M6411_1.02 PAX8 chr3 - 168096733 168096746 7.78e-05 1 GTAACTGATGTGTT
M6411_1.02 PAX8 chr12 + 26114610 26114623 7.82e-05 1 GAGACTGGAGCAGG
M6411_1.02 PAX8 chr5 + 57441859 57441872 7.88e-05 1 ACAACTGAAGCAGG
M6411_1.02 PAX8 chr1 + 70641843 70641856 7.88e-05 1 TTGACTGAACAATG
M6411_1.02 PAX8 chr17 + 19977933 19977946 7.93e-05 1 GTGACCCGCGCGTG
M6411_1.02 PAX8 chr10 - 79083128 79083141 7.93e-05 1 ATAACTCAGGCATG
M6411_1.02 PAX8 chr14 + 101948179 101948192 7.99e-05 1 GAGATTCACGCGGA
M6411_1.02 PAX8 chr5 + 146947368 146947381 7.99e-05 1 gtgattggatcagg
M6411_1.02 PAX8 chr20 - 49984083 49984096 8.04e-05 1 GAGACTGAAGTAGA
M6411_1.02 PAX8 chr15 + 72118217 72118230 8.04e-05 1 GCCACTGGAGAGTA
M6411_1.02 PAX8 chr19 + 12945598 12945611 8.09e-05 1 TTCATTTGAGCGTG
M6411_1.02 PAX8 chr17 + 38718808 38718821 8.09e-05 1 CTAATTGGTGCAGG
M6411_1.02 PAX8 chr12 - 110079942 110079955 8.2e-05 1 CTGATTGGACTAGG
M6411_1.02 PAX8 chr15 + 41283870 41283883 8.25e-05 1 TTGATTGACGTGCA
M6411_1.02 PAX8 chr4 + 98996690 98996703 8.25e-05 1 CAGACTGAAGCGTG
M6411_1.02 PAX8 chr5 + 132963625 132963638 8.25e-05 1 GTGACTGACGCAGC
M6411_1.02 PAX8 chr6 - 37029552 37029565 8.3e-05 1 GTGACTCATCCATG
M6411_1.02 PAX8 chr17 - 51261463 51261476 8.42e-05 1 ATCAATCACGCAGG
M6411_1.02 PAX8 chr19 + 55408377 55408390 8.42e-05 1 GCAAATGAAGTGTG
M6411_1.02 PAX8 chr17 - 74873182 74873195 8.42e-05 1 TTAAATCGCGTATA
M6411_1.02 PAX8 chr3 + 197960012 197960025 8.42e-05 1 CCCACTCACGTGGG
M6411_1.02 PAX8 chr4 + 992543 992556 8.48e-05 1 GTGACTGGCGTCTG
M6411_1.02 PAX8 chr19 - 8090428 8090441 8.53e-05 1 CTCATTGGCCCAGA
M6411_1.02 PAX8 chr1 - 27052662 27052675 8.53e-05 1 GAAATTGGAGCAGA
M6411_1.02 PAX8 chr14 + 35122124 35122137 8.53e-05 1 GTCACTGCCGCGGA
M6411_1.02 PAX8 chr17 - 65323010 65323023 8.53e-05 1 CTCATTGAACTGTT
M6411_1.02 PAX8 chr14 + 76258163 76258176 8.53e-05 1 ctcattggcccaga
M6411_1.02 PAX8 chr13 + 92341919 92341932 8.53e-05 1 GAAATTGGAGCAGA
M6411_1.02 PAX8 chr1 + 53135610 53135623 8.64e-05 1 ACAACTGAAGCAGA
M6411_1.02 PAX8 chr17 - 58230916 58230929 8.76e-05 1 CTCATTCATGCATT
M6411_1.02 PAX8 chr16 - 58515559 58515572 8.76e-05 1 GCCACTCACCCGTG
M6411_1.02 PAX8 chr7 + 129829295 129829308 8.82e-05 1 ATGACTCAGGCAGG
M6411_1.02 PAX8 chr9 - 71911630 71911643 8.93e-05 1 GTCAATGACCCGGA
M6411_1.02 PAX8 chr2 + 28956431 28956444 8.98e-05 1 ttaactgcagcagg
M6411_1.02 PAX8 chr7 + 99472778 99472791 8.98e-05 1 CCCACTCGCGCGGG
M6411_1.02 PAX8 chr6 + 111259312 111259325 8.98e-05 1 GTGACCCGCGCATG
M6411_1.02 PAX8 chr10 + 69902010 69902023 9.04e-05 1 gtaacagaagcagg
M6411_1.02 PAX8 chr1 - 20666947 20666960 9.1e-05 1 GTGATTGGTGCAGT
M6411_1.02 PAX8 chr6 - 159989558 159989571 9.1e-05 1 TTAACTCAACAGTA
M6411_1.02 PAX8 chr17 - 38628858 38628871 9.17e-05 1 TGAATTCAAGTATA
M6411_1.02 PAX8 chr1_KI270711v1_random - 8450 8463 9.23e-05 1 TTCATTGCAGTAGA
M6411_1.02 PAX8 chr6 - 24774931 24774944 9.28e-05 1 CCAACTGACGCAGA
M6411_1.02 PAX8 chr1 - 40876558 40876571 9.28e-05 1 TTCATTCATGTAGT
M6411_1.02 PAX8 chr19 - 50994162 50994175 9.35e-05 1 GTCTTTCAAGCATG
M6411_1.02 PAX8 chr7 - 101165630 101165643 9.35e-05 1 GTCAATGGGGCGGG
M6411_1.02 PAX8 chr3 + 5520452 5520465 9.41e-05 1 gtcactgaagagca
M6411_1.02 PAX8 chrX + 318851 318864 9.47e-05 1 GTGATTGGCGTGCG
M6411_1.02 PAX8 chrX + 319027 319040 9.47e-05 1 GTGATTGGCGTGCG
M6411_1.02 PAX8 chr16 - 2520336 2520349 9.53e-05 1 CTGACTGAAGCGGC
M6411_1.02 PAX8 chr7 + 102081290 102081303 9.53e-05 1 accattcacgcagg
M6411_1.02 PAX8 chr17 - 45147081 45147094 9.6e-05 1 GTCACTGAGGCCTA
M6411_1.02 PAX8 chr5 - 140547580 140547593 9.6e-05 1 GTCACTCAACCCGA
M6411_1.02 PAX8 chr1 - 24715875 24715888 9.66e-05 1 TTCATTGGACTGGT
M6411_1.02 PAX8 chr16 + 86181915 86181928 9.66e-05 1 TTCCTTCAAGCATA
M6411_1.02 PAX8 chr5 - 135315575 135315588 9.66e-05 1 GCCAATGGAGTGTG
M6411_1.02 PAX8 chr6 + 166586958 166586971 9.66e-05 1 gccaatggagtgtg
M6411_1.02 PAX8 chr6 - 167649658 167649671 9.66e-05 1 GCCAATGGAGTGTG
M6411_1.02 PAX8 chr6 - 32128448 32128461 9.79e-05 1 ATCACTGGAGCCTG
M6411_1.02 PAX8 chr22 - 32904472 32904485 9.79e-05 1 CTCAATCAAGAGTA
M6411_1.02 PAX8 chr3 + 14538168 14538181 9.85e-05 1 CTCACTGACGCACA
M6411_1.02 PAX8 chr13 + 91534635 91534648 9.91e-05 1 TTCACTGAAGACTA
M6411_1.02 PAX8 chr10 + 49201044 49201057 9.98e-05 1 ttcactcacgtgtc
M6411_1.02 PAX8 chr7 + 65430669 65430682 9.98e-05 1 GTGACTGAAACGTG
M6411_1.02 PAX8 chr16 - 66552752 66552765 9.98e-05 1 CACACTGAAGCAGA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_12 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif M6411_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/USF2-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_12
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/USF2-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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