Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/USF2-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Database contains 3542 sequences, 1771000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
BCACRTG 7 TCACGTG
ATTGGYY 7 ATTGGCC
VGGAAR 6 GGGAAG
CYCCKCCC 8 CCCCGCCC
RACTACA 7 GACTACA
GCAARGGA 8 GCAAGGGA
ATGGCBGC 8 ATGGCGGC
CCAATCAS 8 CCAATCAG
CACMTGAC 8 CACCTGAC
RKAAA 5 AGAAA
GAGGCGGR 8 GAGGCGGG
GGGMGGGA 8 GGGCGGGA
TGACGTCA 8 TGACGTCA
CGCAKGCG 8 CGCAGGCG
AGAWGGCG 8 AGAAGGCG
AAAGCAAG 8 AAAGCAAG
CKCGTGAC 8 CGCGTGAC
ACTTCTGY 8 ACTTCTGC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.228 C 0.272 G 0.272 T 0.228

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
RACTACA DREME-5 chr20 - 584661 584667 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 2548689 2548695 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 2667368 2667374 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 2667566 2667572 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 3295960 3295966 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 3990433 3990439 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 5058102 5058108 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 5823141 5823147 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 - 6583365 6583371 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 6604217 6604223 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 8996361 8996367 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 9053305 9053311 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 10044633 10044639 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 10412576 10412582 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 10412619 10412625 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 10472655 10472661 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 10879305 10879311 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 12554030 12554036 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 - 12842586 12842592 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 13921695 13921701 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 14321769 14321775 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 14366623 14366629 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 15498370 15498376 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 16786225 16786231 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 17101892 17101898 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 17399642 17399648 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 17416301 17416307 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 17610341 17610347 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 - 17704235 17704241 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 17750169 17750175 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr8 - 17922695 17922701 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 17923821 17923827 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 17932726 17932732 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 18452793 18452799 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 19144813 19144819 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 19179564 19179570 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 19420341 19420347 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 19628672 19628678 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 19966383 19966389 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 20440989 20440995 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 20447881 20447887 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 20540449 20540455 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 21323190 21323196 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 21951173 21951179 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 22218287 22218293 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 23275246 23275252 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 25323285 25323291 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 25878676 25878682 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 25906578 25906584 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 27564599 27564605 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 27893922 27893928 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 27893922 27893928 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 29158000 29158006 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 30135928 30135934 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 31220797 31220803 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 31392917 31392923 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 32494913 32494919 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr21 - 33968516 33968522 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 - 34049496 34049502 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 - 34049496 34049502 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr21 - 34062228 34062234 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 34343204 34343210 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 35092936 35092942 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 35328022 35328028 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 - 36289493 36289499 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 36741643 36741649 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr21 - 37449589 37449595 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 - 37632597 37632603 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 38746194 38746200 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 - 39490379 39490385 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 39682915 39682921 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 40100798 40100804 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 40996901 40996907 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 40997134 40997140 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX - 40997177 40997183 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 41283514 41283520 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 41283587 41283593 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 41661851 41661857 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 41664833 41664839 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 42268719 42268725 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 44345278 44345284 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 - 44400614 44400620 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 44736507 44736513 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 44739070 44739076 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 45334330 45334336 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 45443215 45443221 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 46546734 46546740 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 46971538 46971544 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 47150906 47150912 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 47181516 47181522 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 47266309 47266315 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr18 - 49460739 49460745 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 49749603 49749609 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr14 - 49917227 49917233 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 50335382 50335388 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 - 50369410 50369416 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 50499319 50499325 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 - 50499607 50499613 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 51153702 51153708 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 51372871 51372877 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 - 51844783 51844789 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 52703641 52703647 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr14 - 53002579 53002585 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 54242476 54242482 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 58870950 58870956 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr18 - 59417036 59417042 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr8 - 60285020 60285026 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 - 61792674 61792680 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 64609158 64609164 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 65296736 65296742 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 65323274 65323280 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 - 69630268 69630274 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr10 - 69994512 69994518 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr10 - 70529009 70529015 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr10 - 71323637 71323643 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 75855574 75855580 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 76192077 76192083 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 78583370 78583376 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 - 78796483 78796489 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 - 79728794 79728800 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 - 83599477 83599483 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 - 83757129 83757135 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr10 - 86753772 86753778 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 88864860 88864866 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 89040941 89040947 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 - 91291917 91291923 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 93193194 93193200 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 93232252 93232258 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr8 - 96134650 96134656 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr14 - 96762936 96762942 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 97130472 97130478 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 101736064 101736070 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr14 - 101948364 101948370 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 - 105614322 105614328 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 106598958 106598964 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 107593968 107593974 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 112716687 112716693 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 113368627 113368633 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 114525182 114525188 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 116738417 116738423 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 116892560 116892566 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 117005890 117005896 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 118197508 118197514 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 - 122793959 122793965 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 - 124231336 124231342 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 - 124595775 124595781 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 - 127233099 127233105 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 - 128506046 128506052 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 - 128723653 128723659 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 130896949 130896955 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 - 131243157 131243163 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr5 - 138633193 138633199 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 140398574 140398580 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 - 141370431 141370437 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 - 150368767 150368773 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 151160904 151160910 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 157261655 157261661 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 - 157790177 157790183 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 159614008 159614014 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 - 163550157 163550163 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 - 185768902 185768908 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 - 219713318 219713324 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 222712840 222712846 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 - 223379006 223379012 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 + 97379 97385 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 797202 797208 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr20 + 968260 968266 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 1573584 1573590 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr16 + 1827212 1827218 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 + 2047837 2047843 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 3070916 3070922 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 3073649 3073655 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 3162644 3162650 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr4 + 3756499 3756505 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 4180287 4180293 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 4180515 4180521 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 4815558 4815564 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 4815725 4815731 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 5407527 5407533 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 5790772 5790778 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr10 + 5845420 5845426 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr4 + 6373069 6373075 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr9 + 6757683 6757689 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 6761169 6761175 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 8846805 8846811 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr16 + 9140069 9140075 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr11 + 9384539 9384545 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 10074410 10074416 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 11319344 11319350 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 12682153 12682159 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 12791861 12791867 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 13401541 13401547 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 13557923 13557929 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 13558152 13558158 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr3 + 14319747 14319753 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 14632439 14632445 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 14800044 14800050 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr20 + 17525797 17525803 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 17610529 17610535 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 17671991 17671997 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 17672011 17672017 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 18039278 18039284 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 18592537 18592543 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 19162651 19162657 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 20656988 20656994 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 21053758 21053764 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 21647231 21647237 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 21773085 21773091 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 + 21784951 21784957 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 22428783 22428789 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 23061006 23061012 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 + 23597314 23597320 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 25240399 25240405 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 + 27564907 27564913 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 + 27688109 27688115 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr16 + 28217749 28217755 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 28649126 28649132 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 28860376 28860382 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 29157814 29157820 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 + 30720140 30720146 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 + 32853019 32853025 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr22 + 32904190 32904196 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr3 + 34285100 34285106 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 36224362 36224368 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 + 36618500 36618506 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr22 + 37292106 37292112 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 37572770 37572776 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr21 + 37626265 37626271 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 37816762 37816768 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr9 + 37920553 37920559 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 37947047 37947053 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr2 + 38543078 38543084 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 40876551 40876557 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 42050490 42050496 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 42244800 42244806 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr17 + 42833062 42833068 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 + 43014161 43014167 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 43946667 43946673 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 43974810 43974816 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 44608058 44608064 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr14 + 44962097 44962103 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 45039349 45039355 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr10 + 45595123 45595129 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 + 45646736 45646742 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr2 + 46500484 46500490 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 46531198 46531204 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 46546922 46546928 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr20 + 47181642 47181648 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 47266116 47266122 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 + 47317531 47317537 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr16 + 48099593 48099599 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr20 + 49385604 49385610 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr20 + 49502029 49502035 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 49623596 49623602 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 49749523 49749529 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr20 + 50468166 50468172 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 50760009 50760015 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr19 + 50772561 50772567 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 51025203 51025209 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 55408447 55408453 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr19 + 58466832 58466838 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr11 + 64444753 64444759 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr11 + 65932856 65932862 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr11 + 68974809 68974815 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 69198338 69198344 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr11 + 70699828 70699834 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr9 + 71911410 71911416 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr10 + 72638007 72638013 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 74393017 74393023 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr17 + 75855497 75855503 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 + 78002875 78002881 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr10 + 78134992 78134998 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr10 + 80684378 80684384 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr16 + 84014750 84014756 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 + 84266511 84266517 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr16 + 84637095 84637101 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr2 + 85539943 85539949 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chrX + 86047665 86047671 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr16 + 86634446 86634452 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 87287113 87287119 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr15 + 87582338 87582344 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr2 + 88545320 88545326 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr15 + 90087856 90087862 5.45e-05 0.569 GACTAca
RACTACA DREME-5 chr13 + 90624638 90624644 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr15 + 92661098 92661104 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr7 + 93232307 93232313 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr4 + 94485000 94485006 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr8 + 96134628 96134634 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr8 + 101153872 101153878 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr8 + 102751220 102751226 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr14 + 102757112 102757118 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr6 + 107280906 107280912 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 + 107716820 107716826 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr12 + 110590995 110591001 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 110783404 110783410 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 + 113230414 113230420 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr7 + 116631163 116631169 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 + 117377903 117377909 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr12 + 118618864 118618870 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr12 + 119229965 119229971 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr12 + 120430936 120430942 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr8 + 123447906 123447912 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr10 + 123945683 123945689 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr9 + 124231314 124231320 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr12 + 124240618 124240624 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr12 + 124744804 124744810 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr11 + 126211683 126211689 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 + 127697583 127697589 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr7 + 129224751 129224757 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 + 129690525 129690531 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr9 + 130240745 130240751 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr9 + 130254803 130254809 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr7 + 130941665 130941671 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 + 131255765 131255771 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr12 + 131415939 131415945 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr5 + 134008293 134008299 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr8 + 134334170 134334176 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr3 + 134486144 134486150 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr9 + 136773851 136773857 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr3 + 141849668 141849674 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 148389124 148389130 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr7 + 153190615 153190621 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr5 + 153832135 153832141 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr1 + 156746731 156746737 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 + 157915053 157915059 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr5 + 158213101 158213107 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr2 + 159614114 159614120 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 161117567 161117573 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 + 161215043 161215049 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr6 + 166586904 166586910 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr5 + 168579733 168579739 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr3 + 185342143 185342149 5.45e-05 0.569 gactaca
RACTACA DREME-5 chr3 + 197959858 197959864 5.45e-05 0.569 GACTACA
RACTACA DREME-5 chr1 + 206631226 206631232 5.45e-05 0.569 GActaca
RACTACA DREME-5 chr2 + 241508689 241508695 5.45e-05 0.569 GACTACA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_10 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif RACTACA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/USF2-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_10
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/USF2-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/USF2-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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