# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TFDP1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TFDP1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TFDP1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 22558 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TFDP1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:45 PST 2017) # negatives: 22558 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TFDP1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:45 PST 2017) # host: indra # when: Wed Nov 22 12:59:52 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.216 C 0.282 G 0.285 T 0.218 MOTIF VGCGGGAR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST VGCGGGAR YTCCCGCB 2758 969 1.5e-213 6.8e-209 # GGCGGGAA TTCCCGCC 862 136 1.5e-132 6.9e-128 # GGCGGGAG CTCCCGCC 878 309 1.9e-065 8.5e-061 # CGCGGGAA TTCCCGCG 317 92 1.4e-030 6.4e-026 # AGCGGGAA TTCCCGCT 225 63 6.0e-023 2.7e-018 # CGCGGGAG CTCCCGCG 445 236 2.9e-016 1.3e-011 # AGCGGGAG CTCCCGCT 273 168 2.9e-007 1.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 3060 E= 6.8e-209 0.161765 0.250654 0.587582 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.464379 0.000000 0.535621 0.000000 MOTIF CACGTG DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CACGTG CACGTG 1206 254 3.6e-153 1.6e-148 # CACGTG CACGTG 1206 254 3.6e-153 1.6e-148 letter-probability matrix: alength= 4 w= 6 nsites= 1268 E= 1.6e-148 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CNGGRA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CNGGRA TYCCNG 11019 8577 1.8e-119 8.2e-115 # CTGGGA TCCCAG 2682 1720 3.7e-053 1.7e-048 # CAGGAA TTCCTG 2317 1450 7.4e-050 3.4e-045 # CCGGGA TCCCGG 2108 1428 4.2e-033 1.9e-028 # CCGGAA TTCCGG 1225 810 2.2e-021 9.9e-017 # CGGGGA TCCCCG 2072 1572 3.0e-018 1.3e-013 # CGGGAA TTCCCG 990 694 1.0e-013 4.6e-009 # CTGGAA TTCCAG 1730 1369 9.9e-012 4.4e-007 # CAGGGA TCCCTG 2037 1770 3.3e-006 1.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 15246 E= 8.2e-115 0.000000 1.000000 0.000000 0.000000 0.294963 0.207792 0.198675 0.298570 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.403647 0.000000 0.596353 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARATAH DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ARATAH DTATYT 4837 3164 3.1e-095 1.4e-090 # AGATAA TTATCT 1347 672 2.1e-054 9.2e-050 # AAATAT ATATTT 1112 663 5.4e-028 2.4e-023 # AAATAA TTATTT 1568 1058 5.0e-025 2.2e-020 # AAATAC GTATTT 872 512 3.2e-023 1.4e-018 # AGATAT ATATCT 545 438 3.1e-004 1.4e+001 # AGATAC GTATCT 485 393 9.6e-004 4.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 6272 E= 1.4e-090 1.000000 0.000000 0.000000 0.000000 0.606983 0.000000 0.393017 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.509885 0.222736 0.000000 0.267379 MOTIF CAAVATGG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CAAVATGG CCATBTTG 800 210 1.2e-083 5.5e-079 # CAAGATGG CCATCTTG 424 80 1.8e-058 8.0e-054 # CAAAATGG CCATTTTG 233 73 4.6e-021 2.0e-016 # CAACATGG CCATGTTG 148 58 1.3e-010 5.9e-006 letter-probability matrix: alength= 4 w= 8 nsites= 819 E= 5.5e-079 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.291819 0.183150 0.525031 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGGMGGGR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGGMGGGR YCCCKCCC 2017 1054 1.0e-073 4.5e-069 # GGGCGGGG CCCCGCCC 1053 529 7.0e-042 3.1e-037 # GGGAGGGG CCCCTCCC 563 286 2.5e-022 1.1e-017 # GGGCGGGA TCCCGCCC 211 80 3.6e-015 1.6e-010 # GGGAGGGA TCCCTCCC 356 186 9.0e-014 4.0e-009 letter-probability matrix: alength= 4 w= 8 nsites= 2304 E= 4.5e-069 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.403212 0.596788 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.246962 0.000000 0.753038 0.000000 MOTIF GCCRCYGC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCCRCYGC GCRGYGGC 1701 925 8.4e-056 3.7e-051 # GCCGCCGC GCGGCGGC 902 453 5.4e-036 2.4e-031 # GCCACTGC GCAGTGGC 286 120 3.6e-017 1.6e-012 # GCCACCGC GCGGTGGC 318 155 2.0e-014 8.7e-010 # GCCGCTGC GCAGCGGC 372 246 1.9e-007 8.3e-003 letter-probability matrix: alength= 4 w= 8 nsites= 1936 E= 3.7e-051 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.310950 0.000000 0.689050 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.671488 0.000000 0.328512 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGRAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST RGRAA TTYCY 11611 10169 2.6e-042 1.1e-037 # GGAAA TTTCC 4220 3382 2.9e-026 1.3e-021 # AGAAA TTTCT 5504 4671 3.4e-021 1.5e-016 # AGGAA TTCCT 4311 3575 3.9e-020 1.7e-015 # GGGAA TTCCC 3969 3354 2.2e-015 9.6e-011 letter-probability matrix: alength= 4 w= 5 nsites= 17933 E= 1.1e-037 0.608877 0.000000 0.391123 0.000000 0.000000 0.000000 1.000000 0.000000 0.562148 0.000000 0.437852 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CVGCCTC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CVGCCTC GAGGCBG 2570 1735 2.9e-041 1.2e-036 # CAGCCTC GAGGCTG 982 574 2.3e-026 9.8e-022 # CCGCCTC GAGGCGG 971 648 1.5e-016 6.3e-012 # CGGCCTC GAGGCCG 802 591 5.1e-009 2.2e-004 letter-probability matrix: alength= 4 w= 7 nsites= 2805 E= 1.2e-036 0.000000 1.000000 0.000000 0.000000 0.357576 0.355793 0.286631 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCCTGTAR DREME-10 # Word RC Word Pos Neg P-value E-value # BEST GCCTGTAR YTACAGGC 332 89 1.3e-034 5.4e-030 # GCCTGTAA TTACAGGC 225 49 1.4e-028 6.1e-024 # GCCTGTAG CTACAGGC 107 40 1.4e-008 6.2e-004 letter-probability matrix: alength= 4 w= 8 nsites= 332 E= 5.4e-030 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.677711 0.000000 0.322289 0.000000 MOTIF CAGCCTGG DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CAGCCTGG CCAGGCTG 419 158 7.1e-029 3.0e-024 # CAGCCTGG CCAGGCTG 419 158 7.1e-029 3.0e-024 letter-probability matrix: alength= 4 w= 8 nsites= 425 E= 3.0e-024 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ASWCAC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ASWCAC GTGWST 3643 2825 2.2e-028 9.2e-024 # AGTCAC GTGACT 1122 792 6.7e-015 2.8e-010 # ACACAC GTGTGT 1046 756 1.7e-012 7.1e-008 # ACTCAC GTGAGT 962 747 6.3e-008 2.7e-003 # AGACAC GTGTCT 920 801 1.9e-003 7.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 4328 E= 9.2e-024 1.000000 0.000000 0.000000 0.000000 0.000000 0.527726 0.472274 0.000000 0.517560 0.000000 0.000000 0.482440 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GASGTCAS DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GASGTCAS STGACSTC 439 176 1.6e-027 6.8e-023 # GACGTCAC GTGACGTC 94 19 1.9e-013 8.0e-009 # GAGGTCAG CTGACCTC 180 76 3.0e-011 1.2e-006 # GACGTCAG CTGACGTC 75 27 1.0e-006 4.4e-002 # GAGGTCAC GTGACCTC 115 56 3.6e-006 1.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 444 E= 6.8e-023 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.335586 0.664414 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.457207 0.542793 0.000000 MOTIF AAAAMAAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 723 384 1.8e-025 7.5e-021 # AAAAAAAA TTTTTTTT 488 257 5.4e-018 2.3e-013 # AAAACAAA TTTGTTTT 268 137 3.0e-011 1.3e-006 letter-probability matrix: alength= 4 w= 8 nsites= 896 E= 7.5e-021 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.677455 0.322545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AYGTG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AYGTG CACRT 3992 3258 2.6e-021 1.1e-016 # ATGTG CACAT 2957 2449 9.6e-014 4.0e-009 # ACGTG CACGT 1164 913 9.4e-009 4.0e-004 letter-probability matrix: alength= 4 w= 5 nsites= 4488 E= 1.1e-016 1.000000 0.000000 0.000000 0.000000 0.000000 0.270945 0.000000 0.729055 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CDSCTCC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CDSCTCC GGAGSHG 3406 2739 2.9e-020 1.2e-015 # CTCCTCC GGAGGAG 915 640 6.8e-013 2.8e-008 # CAGCTCC GGAGCTG 711 527 6.4e-008 2.6e-003 # CGGCTCC GGAGCCG 615 503 3.8e-004 1.6e+001 # CACCTCC GGAGGTG 546 451 1.3e-003 5.4e+001 # CGCCTCC GGAGGCG 471 397 6.2e-003 2.6e+002 # CTGCTCC GGAGCAG 578 497 6.7e-003 2.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 3777 E= 1.2e-015 0.000000 1.000000 0.000000 0.000000 0.327244 0.000000 0.286736 0.386021 0.000000 0.499603 0.500397 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TTTWAAAW DREME-17 # Word RC Word Pos Neg P-value E-value # BEST TTTWAAAW WTTTWAAA 469 245 1.1e-017 4.6e-013 # TTTAAAAA TTTTTAAA 258 118 1.6e-013 6.8e-009 # TTTTAAAA TTTTAAAA 164 73 1.5e-009 6.1e-005 # TTTAAAAT ATTTTAAA 156 95 6.8e-005 2.8e+000 # TTTTAAAT ATTTAAAA 124 80 1.2e-003 5.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 477 E= 4.6e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.681342 0.000000 0.000000 0.318658 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.549266 0.000000 0.000000 0.450734 MOTIF RAACCAGA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RAACCAGA TCTGGTTY 249 95 1.8e-017 7.5e-013 # GAACCAGA TCTGGTTC 167 48 5.6e-017 2.3e-012 # AAACCAGA TCTGGTTT 82 47 1.3e-003 5.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 249 E= 7.5e-013 0.329317 0.000000 0.670683 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACASAGC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST ACASAGC GCTSTGT 782 489 3.6e-017 1.5e-012 # ACAGAGC GCTCTGT 487 276 6.0e-015 2.5e-010 # ACACAGC GCTGTGT 299 215 1.1e-004 4.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 792 E= 1.5e-012 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.381313 0.618687 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAATTASC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST AAATTASC GSTAATTT 193 63 6.7e-017 2.8e-012 # AAATTAGC GCTAATTT 146 38 1.7e-016 7.2e-012 # AAATTACC GGTAATTT 47 25 6.4e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 2.8e-012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.243523 0.756477 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCRCGCGS DREME-21 # Word RC Word Pos Neg P-value E-value # BEST GCRCGCGS SCGCGYGC 1175 823 4.1e-016 1.7e-011 # GCGCGCGC GCGCGCGC 409 267 2.1e-008 8.6e-004 # GCACGCGC GCGCGTGC 244 144 1.9e-007 8.0e-003 # GCGCGCGG CCGCGCGC 553 433 6.3e-005 2.6e+000 # GCACGCGG CCGCGTGC 155 95 8.6e-005 3.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 1315 E= 1.7e-011 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.302662 0.000000 0.697338 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.479087 0.520913 0.000000 MOTIF BTTATCA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST BTTATCA TGATAAV 675 416 9.8e-016 4.1e-011 # TTTATCA TGATAAA 283 167 2.2e-008 8.9e-004 # CTTATCA TGATAAG 243 158 1.2e-005 4.9e-001 # GTTATCA TGATAAC 158 97 7.7e-005 3.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 694 E= 4.1e-011 0.000000 0.360231 0.230548 0.409222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACCAYG DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CCACCAYG CRTGGTGG 232 96 1.6e-014 6.5e-010 # CCACCACG CGTGGTGG 130 39 5.6e-013 2.3e-008 # CCACCATG CATGGTGG 102 57 2.2e-004 9.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 232 E= 6.5e-010 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.560345 0.000000 0.439655 0.000000 0.000000 1.000000 0.000000 MOTIF CTCTGACA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CTCTGACA TGTCAGAG 190 71 4.4e-014 1.8e-009 # CTCTGACA TGTCAGAG 190 71 4.4e-014 1.8e-009 letter-probability matrix: alength= 4 w= 8 nsites= 190 E= 1.8e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF MTGAGTCA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST MTGAGTCA TGACTCAK 215 88 8.4e-014 3.5e-009 # CTGAGTCA TGACTCAG 129 53 7.9e-009 3.3e-004 # ATGAGTCA TGACTCAT 87 35 1.4e-006 5.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 226 E= 3.5e-009 0.398230 0.601770 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATTGGCYG DREME-26 # Word RC Word Pos Neg P-value E-value # BEST ATTGGCYG CRGCCAAT 218 90 8.6e-014 3.6e-009 # ATTGGCTG CAGCCAAT 158 57 1.6e-012 6.7e-008 # ATTGGCCG CGGCCAAT 64 34 1.6e-003 6.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 227 E= 3.6e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.290749 0.000000 0.709251 0.000000 0.000000 1.000000 0.000000 MOTIF CAGTGAS DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CAGTGAS STCACTG 637 404 1.4e-013 5.7e-009 # CAGTGAG CTCACTG 438 267 4.5e-011 1.8e-006 # CAGTGAC GTCACTG 200 137 3.4e-004 1.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 642 E= 5.7e-009 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.314642 0.685358 0.000000 MOTIF AGGCAGGA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST AGGCAGGA TCCTGCCT 190 80 7.6e-012 3.1e-007 # AGGCAGGA TCCTGCCT 190 80 7.6e-012 3.1e-007 letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 3.1e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGACRGA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST GAGACRGA TCYGTCTC 204 90 1.1e-011 4.4e-007 # GAGACGGA TCCGTCTC 84 31 3.9e-007 1.6e-002 # GAGACAGA TCTGTCTC 121 59 2.1e-006 8.7e-002 letter-probability matrix: alength= 4 w= 8 nsites= 213 E= 4.4e-007 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.605634 0.000000 0.394366 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRCCATGK DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CRCCATGK MCATGGYG 226 101 1.6e-012 6.7e-008 # CGCCATGG CCATGGCG 99 47 9.8e-006 4.0e-001 # CACCATGT ACATGGTG 37 10 4.9e-005 2.0e+000 # CGCCATGT ACATGGCG 41 14 1.8e-004 7.3e+000 # CACCATGG CCATGGTG 55 31 6.3e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 229 E= 6.7e-008 0.000000 1.000000 0.000000 0.000000 0.393013 0.000000 0.606987 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.659389 0.340611 MOTIF CCMCACCC DREME-31 # Word RC Word Pos Neg P-value E-value # BEST CCMCACCC GGGTGKGG 584 382 2.7e-011 1.1e-006 # CCCCACCC GGGTGGGG 419 263 9.5e-010 3.9e-005 # CCACACCC GGGTGTGG 169 122 3.4e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 596 E= 1.1e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285235 0.714765 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAACCCHG DREME-32 # Word RC Word Pos Neg P-value E-value # BEST AAACCCHG CDGGGTTT 267 139 8.7e-011 3.6e-006 # AAACCCCG CGGGGTTT 80 29 5.3e-007 2.2e-002 # AAACCCAG CTGGGTTT 96 54 3.7e-004 1.5e+001 # AAACCCTG CAGGGTTT 94 56 1.2e-003 4.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 271 E= 3.6e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.354244 0.298893 0.000000 0.346863 0.000000 0.000000 1.000000 0.000000 MOTIF CAGCCCHG DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CAGCCCHG CDGGGCTG 766 545 3.2e-010 1.3e-005 # CAGCCCCG CGGGGCTG 264 173 7.1e-006 2.9e-001 # CAGCCCAG CTGGGCTG 279 188 1.3e-005 5.5e-001 # CAGCCCTG CAGGGCTG 239 190 9.9e-003 4.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 785 E= 1.3e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.355414 0.340127 0.000000 0.304459 0.000000 0.000000 1.000000 0.000000 MOTIF TCTACTAA DREME-34 # Word RC Word Pos Neg P-value E-value # BEST TCTACTAA TTAGTAGA 80 20 5.4e-010 2.2e-005 # TCTACTAA TTAGTAGA 80 20 5.4e-010 2.2e-005 letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 2.2e-005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATTTHA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST CATTTHA TDAAATG 804 582 7.6e-010 3.1e-005 # CATTTTA TAAAATG 306 192 1.6e-007 6.5e-003 # CATTTAA TTAAATG 217 166 5.1e-003 2.1e+002 # CATTTCA TGAAATG 291 236 8.9e-003 3.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 826 E= 3.1e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.265133 0.355932 0.000000 0.378935 1.000000 0.000000 0.000000 0.000000 MOTIF CGCATGCG DREME-36 # Word RC Word Pos Neg P-value E-value # BEST CGCATGCG CGCATGCG 81 21 8.2e-010 3.4e-005 # CGCATGCG CGCATGCG 81 21 8.2e-010 3.4e-005 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 3.4e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGATSGAG DREME-37 # Word RC Word Pos Neg P-value E-value # BEST AGATSGAG CTCSATCT 172 79 1.9e-009 8.0e-005 # AGATGGAG CTCCATCT 131 60 1.4e-007 5.9e-003 # AGATCGAG CTCGATCT 42 19 2.2e-003 9.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 176 E= 8.0e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.238636 0.761364 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAYTTTGG DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CAYTTTGG CCAAARTG 240 129 3.5e-009 1.4e-004 # CACTTTGG CCAAAGTG 173 86 3.2e-008 1.3e-003 # CATTTTGG CCAAAATG 69 43 8.8e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 243 E= 1.4e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.716049 0.000000 0.283951 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATAYATRC DREME-39 # Word RC Word Pos Neg P-value E-value # BEST ATAYATRC GYATRTAT 118 45 4.6e-009 1.9e-004 # ATACATGC GCATGTAT 32 7 3.5e-005 1.4e+000 # ATACATAC GTATGTAT 36 11 1.7e-004 7.1e+000 # ATATATGC GCATATAT 25 9 4.5e-003 1.9e+002 # ATATATAC GTATATAT 38 19 8.1e-003 3.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 130 E= 1.9e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.538462 0.000000 0.461538 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.584615 0.000000 0.415385 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF SGCGGGA DREME-40 # Word RC Word Pos Neg P-value E-value # BEST SGCGGGA TCCCGCS 414 266 5.9e-009 2.4e-004 # CGCGGGA TCCCGCG 242 159 1.8e-005 7.6e-001 # GGCGGGA TCCCGCC 175 107 2.9e-005 1.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 423 E= 2.4e-004 0.000000 0.581560 0.418440 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTSCAGCY DREME-41 # Word RC Word Pos Neg P-value E-value # BEST CTSCAGCY RGCTGSAG 691 475 7.9e-011 3.3e-006 # CTCCAGCC GGCTGGAG 197 132 1.9e-004 7.9e+000 # CTGCAGCC GGCTGCAG 218 151 2.7e-004 1.1e+001 # CTGCAGCT AGCTGCAG 164 109 5.0e-004 2.1e+001 # CTCCAGCT AGCTGGAG 143 99 2.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 701 E= 3.3e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.487874 0.512126 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.577746 0.000000 0.422254 MOTIF CTGTR DREME-42 # Word RC Word Pos Neg P-value E-value # BEST CTGTR YACAG 5715 5205 1.1e-008 4.5e-004 # CTGTA TACAG 2077 1772 1.5e-007 6.1e-003 # CTGTG CACAG 4033 3730 8.2e-005 3.4e+000 letter-probability matrix: alength= 4 w= 5 nsites= 6751 E= 4.5e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.326618 0.000000 0.673382 0.000000 MOTIF CCCAGGM DREME-43 # Word RC Word Pos Neg P-value E-value # BEST CCCAGGM KCCTGGG 1078 847 4.1e-008 1.6e-003 # CCCAGGC GCCTGGG 715 562 7.8e-006 3.2e-001 # CCCAGGA TCCTGGG 377 295 8.1e-004 3.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1104 E= 1.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.343297 0.656703 0.000000 0.000000 MOTIF ACTTCCGY DREME-44 # Word RC Word Pos Neg P-value E-value # BEST ACTTCCGY RCGGAAGT 145 68 6.6e-008 2.7e-003 # ACTTCCGC GCGGAAGT 104 50 7.8e-006 3.2e-001 # ACTTCCGT ACGGAAGT 41 18 1.9e-003 7.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 146 E= 2.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.719178 0.000000 0.280822 MOTIF CCAATCAG DREME-45 # Word RC Word Pos Neg P-value E-value # BEST CCAATCAG CTGATTGG 114 48 1.1e-007 4.3e-003 # CCAATCAG CTGATTGG 114 48 1.1e-007 4.3e-003 letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 4.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGCGATTC DREME-46 # Word RC Word Pos Neg P-value E-value # BEST AGCGATTC GAATCGCT 50 11 2.3e-007 9.1e-003 # AGCGATTC GAATCGCT 50 11 2.3e-007 9.1e-003 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 9.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGGCKGC DREME-47 # Word RC Word Pos Neg P-value E-value # BEST ATGGCKGC GCMGCCAT 183 99 3.0e-007 1.2e-002 # ATGGCGGC GCCGCCAT 100 46 4.5e-006 1.8e-001 # ATGGCTGC GCAGCCAT 83 53 6.2e-003 2.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 183 E= 1.2e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.546448 0.453552 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GARGCCA DREME-48 # Word RC Word Pos Neg P-value E-value # BEST GARGCCA TGGCYTC 865 672 3.0e-007 1.2e-002 # GAAGCCA TGGCTTC 347 235 1.7e-006 6.9e-002 # GAGGCCA TGGCCTC 526 445 4.7e-003 1.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 882 E= 1.2e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.393424 0.000000 0.606576 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTGGGTA DREME-49 # Word RC Word Pos Neg P-value E-value # BEST GCTGGGTA TACCCAGC 102 43 5.1e-007 2.0e-002 # GCTGGGTA TACCCAGC 102 43 5.1e-007 2.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 2.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GRACTACA DREME-50 # Word RC Word Pos Neg P-value E-value # BEST GRACTACA TGTAGTYC 86 34 1.1e-006 4.5e-002 # GGACTACA TGTAGTCC 49 17 5.0e-005 2.0e+000 # GAACTACA TGTAGTTC 37 17 4.5e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 4.5e-002 0.000000 0.000000 1.000000 0.000000 0.426966 0.000000 0.573034 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGTCWCA DREME-51 # Word RC Word Pos Neg P-value E-value # BEST AGGTCWCA TGWGACCT 144 74 1.2e-006 4.7e-002 # AGGTCTCA TGAGACCT 117 63 3.4e-005 1.4e+000 # AGGTCACA TGTGACCT 29 11 3.2e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 146 E= 4.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.198630 0.000000 0.000000 0.801370 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4926.69 seconds