******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:129614603-129614703 1.0000 100 chr8:30731092-30731192 1.0000 100 chr16:18801178-18801278 1.0000 100 chr12:54326252-54326352 1.0000 100 chr6:28104485-28104585 1.0000 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chr16:28539193-28539293 1.0000 100 chr3:136752627-136752727 1.0000 100 chr13:90259758-90259858 1.0000 100 chr2:208025258-208025358 1.0000 100 chr18:9016308-9016408 1.0000 100 chr11:118435715-11843581 1.0000 100 chr5:126777011-126777111 1.0000 100 chr4:49161183-49161283 1.0000 100 chr17:80254642-80254742 1.0000 100 chr17:27969098-27969198 1.0000 100 chr1:244047763-244047863 1.0000 100 chr1:23559141-23559241 1.0000 100 chr8:37905198-37905298 1.0000 100 chr12:56752000-56752100 1.0000 100 chr11:47944232-47944332 1.0000 100 chr7:99438352-99438452 1.0000 100 chrX:24025825-24025925 1.0000 100 chr14:69191463-69191563 1.0000 100 chr17:77509293-77509393 1.0000 100 chr6:27467742-27467842 1.0000 100 chrX:49155818-49155918 1.0000 100 chr3:40309655-40309755 1.0000 100 chr8:74350287-74350387 1.0000 100 chr4:76086977-76087077 1.0000 100 chr15:43800485-43800585 1.0000 100 chr9:98049586-98049686 1.0000 100 chr1:24704980-24705080 1.0000 100 chr6:149546136-149546236 1.0000 100 chr4:87422277-87422377 1.0000 100 chr13:46052350-46052450 1.0000 100 chr6:137904455-137904555 1.0000 100 chr16:3282897-3282997 1.0000 100 chr5:136466511-136466611 1.0000 100 chr10:119165061-11916516 1.0000 100 chr7:142854105-142854205 1.0000 100 chr3:14178167-14178267 1.0000 100 chr1:12449086-12449186 1.0000 100 chr10:9825459-9825559 1.0000 100 chr3:184298638-184298738 1.0000 100 chr8:37762651-37762751 1.0000 100 chr1:212791710-212791810 1.0000 100 chr17:45333072-45333172 1.0000 100 chrX:49123770-49123870 1.0000 100 chr17:76397619-76397719 1.0000 100 chr14:75278620-75278720 1.0000 100 chrX:71365547-71365647 1.0000 100 chr1:154386572-154386672 1.0000 100 chr10:119892410-11989251 1.0000 100 chr10:96129595-96129695 1.0000 100 chr1:212791488-212791588 1.0000 100 chr12:52010170-52010270 1.0000 100 chr6:82558249-82558349 1.0000 100 chr4:168480853-168480953 1.0000 100 chr12:53501220-53501320 1.0000 100 chr19:49877551-49877651 1.0000 100 chr1:26744301-26744401 1.0000 100 chr11:59548923-59549023 1.0000 100 chr1:25906143-25906243 1.0000 100 chr13:60396832-60396932 1.0000 100 chr14:23285676-23285776 1.0000 100 chr1:156337884-156337984 1.0000 100 chr11:67262895-67262995 1.0000 100 chr7:150432228-150432328 1.0000 100 chr11:67463963-67464063 1.0000 100 chr6:41318876-41318976 1.0000 100 chr8:43093606-43093706 1.0000 100 chr12:108562507-10856260 1.0000 100 chr19:10754907-10755007 1.0000 100 chr15:63793668-63793768 1.0000 100 chr5:68628058-68628158 1.0000 100 chr7:66740144-66740244 1.0000 100 chr15:64381107-64381207 1.0000 100 chr7:138355243-138355343 1.0000 100 chr7:25927487-25927587 1.0000 100 chr1:151281478-151281578 1.0000 100 chr10:121928022-12192812 1.0000 100 chr2:207772698-207772798 1.0000 100 chr9:33515572-33515672 1.0000 100 chr6:146912809-146912909 1.0000 100 chr1:70460945-70461045 1.0000 100 chr14:23556172-23556272 1.0000 100 chr11:73982340-73982440 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.218 C 0.282 G 0.282 T 0.218 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.221 C 0.279 G 0.279 T 0.221 ******************************************************************************** ******************************************************************************** MOTIF WTCAARATGGAGTYACTCWKGT MEME-1 width = 22 sites = 27 llr = 546 E-value = 1.1e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3119a4a:::a:::7:::52:: pos.-specific C 118:::::::::16:7:7:1:2 probability G :1:1:6::aa:a::31:1:49: matrix T 661::::a::::93119253:7 bits 2.2 ** * 2.0 * ** * 1.7 * ******* * 1.5 * ******* * Relative 1.3 ** ******* * * Entropy 1.1 ** ******* * * ** (29.1 bits) 0.9 * ************* * * ** 0.7 * ***************** ** 0.4 ******************* ** 0.2 ********************** 0.0 ---------------------- Multilevel TTCAAGATGGAGTCACTCTGGT consensus A A TG AT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:32021229-32021329 + 64 6.95e-14 ttagccccta ttcaagatggagtcactctggt tcatacgcct chr4:143362617-143362717 + 66 6.95e-14 cccagcccca ttcaagatggagtcactctggt tcaaatgcct chr3:101643742-101643842 - 64 6.95e-14 CCAGCCCCTA TTCAAGATGGAGTCACTCTGGT TCTAACAGCT chr9:98049586-98049686 + 48 4.60e-13 ctagccccca ttcaagatggagtcactctagt tcaaatgcct chr7:106639629-106639729 - 1 4.60e-13 CCAGTCACTA TTCAAGATGGAGTCACTCTAGT chr16:50457849-50457949 - 32 1.22e-12 CCAGCCTCTA TTCAAGATGGAGTCGCTCTGGT TCGAATGCCT chr2:39467956-39468056 - 40 3.06e-12 CCAGCTCCTA TTCAAGATGGAGTTGCTCTGGT TCACACACCT chr17:27907844-27907944 - 55 3.06e-12 CCAGCACCTA TTCAAGATGGAGTTGCTCTTGT TCAAACGCCT chr5:68628058-68628158 - 2 4.94e-12 CCAGCTTCTA TTCAAAATGGAGTTGCTCTGGT T chr7:138355243-138355343 - 24 2.41e-11 ATCCTAATGT CTCAAAATGGAGTTACTCATGT TAGGTGGAAT chr12:48235663-48235763 - 17 3.51e-11 GGAGGTTGGA AGCAAGATGGAGTCACTTAGGT CAGATCTCTT chr5:178475802-178475902 - 49 3.93e-11 CAGATTAGCG TCCAAGATGGAGTCACTGTTGT GTCCACACCA chr17:62634579-62634679 + 10 6.34e-11 cagcccctt ttaaagatggagttgctctggt ttgaacacct chr1:36016633-36016733 - 23 7.10e-11 ACCATACCAA ACCAAAATGGAGTCACTCATGC TAAGCGTGAG chr15:58352295-58352395 + 18 2.84e-10 ccaccctcta tatgagatggagtcactctggt tccacagcct chr15:29673184-29673284 + 3 3.13e-10 ta ctcaagatggagtcgctgtggt tcaaacacct chr7:140486629-140486729 + 13 3.79e-10 ggaggttaga agcaagatggagtcagttaagt tagatctctc chr3:183521031-183521131 + 42 8.14e-10 cgtagtacag aacaaaatggagtttcttatgt cttcttcatt chr6:33376539-33376639 + 69 1.43e-09 ggaggttaga agcaaaatggagtcggttaagt tagatttctt chr17:15526786-15526886 + 12 2.77e-09 agtagaccaa accaaaatggagttactcacgg taaagttcca chr8:79691765-79691865 + 45 6.63e-09 tgaggctaga agcaagatggagttagccatgc tagacttctc chr13:92438700-92438800 - 9 1.02e-08 ATTTTTCATG TTTGAAATGGAGCCACTCATTT TTTCCAGC chr1:52330569-52330669 + 56 1.02e-08 ccagcccctg ttcaagatggagtcaaacaact ctgacaGCAC chr1:236352080-236352180 - 54 1.29e-08 AACAGACCAA ACTAAAATGGAGCCATTCATGC TGAAGTTCCA chr6:16031353-16031453 + 41 2.24e-08 aggaaaataa aacaacatggagtaattcaggc taaagacctg chr16:28539193-28539293 + 56 2.36e-08 cttttttttt tttgaaatggagtctctgtcgc ccggctggag chr17:33908250-33908350 - 60 8.56e-08 TGAGACGCTG TTATCAATGGAGTTAGTTATGC TTTCTTGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:32021229-32021329 7e-14 63_[+1]_15 chr4:143362617-143362717 7e-14 65_[+1]_13 chr3:101643742-101643842 7e-14 63_[-1]_15 chr9:98049586-98049686 4.6e-13 47_[+1]_31 chr7:106639629-106639729 4.6e-13 [-1]_78 chr16:50457849-50457949 1.2e-12 31_[-1]_47 chr2:39467956-39468056 3.1e-12 39_[-1]_39 chr17:27907844-27907944 3.1e-12 54_[-1]_24 chr5:68628058-68628158 4.9e-12 1_[-1]_77 chr7:138355243-138355343 2.4e-11 23_[-1]_55 chr12:48235663-48235763 3.5e-11 16_[-1]_62 chr5:178475802-178475902 3.9e-11 48_[-1]_30 chr17:62634579-62634679 6.3e-11 9_[+1]_69 chr1:36016633-36016733 7.1e-11 22_[-1]_56 chr15:58352295-58352395 2.8e-10 17_[+1]_61 chr15:29673184-29673284 3.1e-10 2_[+1]_76 chr7:140486629-140486729 3.8e-10 12_[+1]_66 chr3:183521031-183521131 8.1e-10 41_[+1]_37 chr6:33376539-33376639 1.4e-09 68_[+1]_10 chr17:15526786-15526886 2.8e-09 11_[+1]_67 chr8:79691765-79691865 6.6e-09 44_[+1]_34 chr13:92438700-92438800 1e-08 8_[-1]_70 chr1:52330569-52330669 1e-08 55_[+1]_23 chr1:236352080-236352180 1.3e-08 53_[-1]_25 chr6:16031353-16031453 2.2e-08 40_[+1]_38 chr16:28539193-28539293 2.4e-08 55_[+1]_23 chr17:33908250-33908350 8.6e-08 59_[-1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTCAARATGGAGTYACTCWKGT width=22 seqs=27 chr12:32021229-32021329 ( 64) TTCAAGATGGAGTCACTCTGGT 1 chr4:143362617-143362717 ( 66) TTCAAGATGGAGTCACTCTGGT 1 chr3:101643742-101643842 ( 64) TTCAAGATGGAGTCACTCTGGT 1 chr9:98049586-98049686 ( 48) TTCAAGATGGAGTCACTCTAGT 1 chr7:106639629-106639729 ( 1) TTCAAGATGGAGTCACTCTAGT 1 chr16:50457849-50457949 ( 32) TTCAAGATGGAGTCGCTCTGGT 1 chr2:39467956-39468056 ( 40) TTCAAGATGGAGTTGCTCTGGT 1 chr17:27907844-27907944 ( 55) TTCAAGATGGAGTTGCTCTTGT 1 chr5:68628058-68628158 ( 2) TTCAAAATGGAGTTGCTCTGGT 1 chr7:138355243-138355343 ( 24) CTCAAAATGGAGTTACTCATGT 1 chr12:48235663-48235763 ( 17) AGCAAGATGGAGTCACTTAGGT 1 chr5:178475802-178475902 ( 49) TCCAAGATGGAGTCACTGTTGT 1 chr17:62634579-62634679 ( 10) TTAAAGATGGAGTTGCTCTGGT 1 chr1:36016633-36016733 ( 23) ACCAAAATGGAGTCACTCATGC 1 chr15:58352295-58352395 ( 18) TATGAGATGGAGTCACTCTGGT 1 chr15:29673184-29673284 ( 3) CTCAAGATGGAGTCGCTGTGGT 1 chr7:140486629-140486729 ( 13) AGCAAGATGGAGTCAGTTAAGT 1 chr3:183521031-183521131 ( 42) AACAAAATGGAGTTTCTTATGT 1 chr6:33376539-33376639 ( 69) AGCAAAATGGAGTCGGTTAAGT 1 chr17:15526786-15526886 ( 12) ACCAAAATGGAGTTACTCACGG 1 chr8:79691765-79691865 ( 45) AGCAAGATGGAGTTAGCCATGC 1 chr13:92438700-92438800 ( 9) TTTGAAATGGAGCCACTCATTT 1 chr1:52330569-52330669 ( 56) TTCAAGATGGAGTCAAACAACT 1 chr1:236352080-236352180 ( 54) ACTAAAATGGAGCCATTCATGC 1 chr6:16031353-16031453 ( 41) AACAACATGGAGTAATTCAGGC 1 chr16:28539193-28539293 ( 56) TTTGAAATGGAGTCTCTGTCGC 1 chr17:33908250-33908350 ( 60) TTATCAATGGAGTTAGTTATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.3462 E= 1.1e-082 60 -191 -1140 143 -99 -91 -91 143 -157 148 -1140 -57 195 -1140 -133 -257 213 -291 -1140 -1140 75 -291 108 -1140 218 -1140 -1140 -1140 -1140 -1140 -1140 218 -1140 -1140 184 -1140 -1140 -1140 184 -1140 218 -1140 -1140 -1140 -1140 -1140 184 -1140 -1140 -191 -1140 207 -257 117 -1140 60 160 -1140 -11 -157 -257 141 -91 -157 -257 -291 -1140 207 -1140 133 -133 -25 113 -1140 -1140 123 -25 -191 54 60 -1140 -291 173 -257 -1140 -33 -291 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 27 E= 1.1e-082 0.333333 0.074074 0.000000 0.592593 0.111111 0.148148 0.148148 0.592593 0.074074 0.777778 0.000000 0.148148 0.851852 0.000000 0.111111 0.037037 0.962963 0.037037 0.000000 0.000000 0.370370 0.037037 0.592593 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.074074 0.000000 0.925926 0.037037 0.629630 0.000000 0.333333 0.666667 0.000000 0.259259 0.074074 0.037037 0.740741 0.148148 0.074074 0.037037 0.037037 0.000000 0.925926 0.000000 0.703704 0.111111 0.185185 0.481481 0.000000 0.000000 0.518519 0.185185 0.074074 0.407407 0.333333 0.000000 0.037037 0.925926 0.037037 0.000000 0.222222 0.037037 0.740741 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCAARATGGAGTYACTCWKGT MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TCAA[GA]ATGGAGT[CT][AG]CTC[TA][GT]G[TC] -------------------------------------------------------------------------------- Time 354.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 width = 27 sites = 16 llr = 427 E-value = 1.0e-066 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::::51::::::79614::::11a1: pos.-specific C :99:9::88:99a1::11:9:::::11 probability G 7::::591::1::2144:a::a99::: matrix T 211a1::13a11::::44:1a::::89 bits 2.2 * * * * 2.0 * * * * 1.7 * * * * ** * 1.5 *** * * ** * ***** * * Relative 1.3 **** * * ** * ********* Entropy 1.1 ************ ** ********* (38.5 bits) 0.9 *************** ********* 0.7 **************** ********** 0.4 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel GCCTCAGCCTCCCAAAGAGCTGGGATT consensus G T GTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr3:186860972-186861072 - 23 6.71e-16 TAATCCATTG GCCTCGGCCTCCCAAAGTGCTGGGATT ACAGGCATGA chr8:43093606-43093706 - 23 6.66e-15 CGATCCTCCC GCCTCGGCCTCCCAAAGCGCTGGGATT ACAGGCTGGA chr7:101252483-101252583 - 62 1.09e-14 TGATCCGCCC GCCTCGGCTTCCCAAAATGCTGGGATT ACAGGAGTGA chr22:20023387-20023487 - 12 1.29e-14 TGATCCACCC GCCTCGGCCTCCCAAACTGCTGGGATT ACAGGCGTGA chr7:14002793-14002893 + 28 2.23e-14 tgatccgccc acctcggcttcccaaagtgctgggatt acaggcgtga chr5:135116667-135116767 + 10 2.23e-14 gatctgccc gcctcagcctcccaaagtgttgggatt acaggcgtga chrX:9353490-9353590 - 11 3.93e-14 TGATTCTCCT GCCTCAACCTCCCAAGTAGCTGGGATT ACAGGTGCGT chr3:183357828-183357928 - 4 3.93e-14 TCATCTGCCC TTCTCGGCCTCCCAAAGTGCTGGGATT ACA chr2:207772698-207772798 + 34 9.95e-14 caattcttgt gcctcagcctcccaggaagctgggatt acaggcctac chr1:32008557-32008657 + 69 3.01e-13 cgattctcct gcctcaggttcccgagtagctgggatt acagg chr16:87389894-87389994 - 66 3.95e-13 ATTCTCCT GCCTCAGCCTCCCCAGTAGCTGGGAAT ACAGGTGCCT chr1:244833845-244833945 + 43 3.72e-12 ctattctcct tcctcaggctgccgagtagctgggatt acaggcgccc chr18:9016308-9016408 + 35 5.15e-12 cgatcctctt gcctcagcctcccgagtagctggaacc acaggtatgg chr17:82287777-82287877 + 48 1.09e-11 tgatcctccc gctttggccttccaaagcgctgggatt acgagcatga chr6:143806456-143806556 - 42 4.09e-11 TGATCCTCTC ACCTCAGTTTCTCAAAGTGCTGAAATT ACAGGCATGA chr14:104752169-10475226 - 7 5.68e-11 CGATCCTCCC TTCTCGGCCTCCCCGGTAGCTGGGACC GCAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:186860972-186861072 6.7e-16 22_[-2]_51 chr8:43093606-43093706 6.7e-15 22_[-2]_51 chr7:101252483-101252583 1.1e-14 61_[-2]_12 chr22:20023387-20023487 1.3e-14 11_[-2]_62 chr7:14002793-14002893 2.2e-14 27_[+2]_46 chr5:135116667-135116767 2.2e-14 9_[+2]_64 chrX:9353490-9353590 3.9e-14 10_[-2]_63 chr3:183357828-183357928 3.9e-14 3_[-2]_70 chr2:207772698-207772798 1e-13 33_[+2]_40 chr1:32008557-32008657 3e-13 68_[+2]_5 chr16:87389894-87389994 3.9e-13 65_[-2]_8 chr1:244833845-244833945 3.7e-12 42_[+2]_31 chr18:9016308-9016408 5.2e-12 34_[+2]_39 chr17:82287777-82287877 1.1e-11 47_[+2]_26 chr6:143806456-143806556 4.1e-11 41_[-2]_32 chr14:104752169-10475226 5.7e-11 6_[-2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTCRGCCTCCCAARKWGCTGGGATT width=27 seqs=16 chr3:186860972-186861072 ( 23) GCCTCGGCCTCCCAAAGTGCTGGGATT 1 chr8:43093606-43093706 ( 23) GCCTCGGCCTCCCAAAGCGCTGGGATT 1 chr7:101252483-101252583 ( 62) GCCTCGGCTTCCCAAAATGCTGGGATT 1 chr22:20023387-20023487 ( 12) GCCTCGGCCTCCCAAACTGCTGGGATT 1 chr7:14002793-14002893 ( 28) ACCTCGGCTTCCCAAAGTGCTGGGATT 1 chr5:135116667-135116767 ( 10) GCCTCAGCCTCCCAAAGTGTTGGGATT 1 chrX:9353490-9353590 ( 11) GCCTCAACCTCCCAAGTAGCTGGGATT 1 chr3:183357828-183357928 ( 4) TTCTCGGCCTCCCAAAGTGCTGGGATT 1 chr2:207772698-207772798 ( 34) GCCTCAGCCTCCCAGGAAGCTGGGATT 1 chr1:32008557-32008657 ( 69) GCCTCAGGTTCCCGAGTAGCTGGGATT 1 chr16:87389894-87389994 ( 66) GCCTCAGCCTCCCCAGTAGCTGGGAAT 1 chr1:244833845-244833945 ( 43) TCCTCAGGCTGCCGAGTAGCTGGGATT 1 chr18:9016308-9016408 ( 35) GCCTCAGCCTCCCGAGTAGCTGGAACC 1 chr17:82287777-82287877 ( 48) GCTTTGGCCTTCCAAAGCGCTGGGATT 1 chr6:143806456-143806556 ( 42) ACCTCAGTTTCTCAAAGTGCTGAAATT 1 chr14:104752169-10475226 ( 7) TTCTCGGCCTCCCCGGTAGCTGGGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 11.4378 E= 1.0e-066 -82 -1064 130 -23 -1064 165 -1064 -82 -1064 175 -1064 -182 -1064 -1064 -1064 218 -1064 175 -1064 -182 118 -1064 84 -1064 -182 -1064 175 -1064 -1064 154 -116 -182 -1064 142 -1064 18 -1064 -1064 -1064 218 -1064 165 -216 -182 -1064 175 -1064 -182 -1064 184 -1064 -1064 164 -116 -57 -1064 199 -1064 -116 -1064 135 -1064 65 -1064 -82 -216 65 77 99 -116 -1064 99 -1064 -1064 184 -1064 -1064 175 -1064 -182 -1064 -1064 -1064 218 -1064 -1064 184 -1064 -182 -1064 175 -1064 -82 -1064 165 -1064 218 -1064 -1064 -1064 -182 -116 -1064 188 -1064 -116 -1064 199 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 16 E= 1.0e-066 0.125000 0.000000 0.687500 0.187500 0.000000 0.875000 0.000000 0.125000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.937500 0.000000 0.062500 0.500000 0.000000 0.500000 0.000000 0.062500 0.000000 0.937500 0.000000 0.000000 0.812500 0.125000 0.062500 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.062500 0.062500 0.000000 0.937500 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 0.687500 0.125000 0.187500 0.000000 0.875000 0.000000 0.125000 0.000000 0.562500 0.000000 0.437500 0.000000 0.125000 0.062500 0.437500 0.375000 0.437500 0.125000 0.000000 0.437500 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.125000 0.000000 0.812500 0.000000 0.125000 0.000000 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCRGCCTCCCAARKWGCTGGGATT MEME-2 regular expression -------------------------------------------------------------------------------- GCCTC[AG]GC[CT]TCCCAA[AG][GT][AT]GCTGGGATT -------------------------------------------------------------------------------- Time 662.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 width = 50 sites = 7 llr = 382 E-value = 7.4e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::1:a1::::11:a1:1:1::::7::::a9::::1111:::43:1 pos.-specific C a:1:::::a:::1:7:31::a:9::a:71a::a::aa:a7:79:aa4::: probability G ::9a:a:9::9:9a:7:7:::::7a::::::a::1:::::9::::::6a7 matrix T :a::::a::::a::3161:9:911::a31:a::::::a:1:1:a::11:1 bits 2.2 * * * * * * * * * * * 2.0 * * * * * * * * * * * 1.7 ** **** ** * * * * *** ***** **** *** * 1.5 ** **** ** * * **** *** ********** *** * Relative 1.3 ************** ***** *** ********** * **** * Entropy 1.1 *************** ***** *************** * **** * (78.7 bits) 0.9 **************** **************************** ** 0.7 ************************************************** 0.4 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel CTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCAGGG consensus T C T CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chrX:49123770-49123870 + 21 2.05e-29 gtttcacagg ctggagtgcagtggcgtgatctcggctcactgcaacctccgcctcccagg ttcaagcgat chr1:32008557-32008657 + 3 1.80e-28 ga ctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccagg gtccaacgat chr17:75858491-75858591 - 7 1.19e-26 GTTGCCCAGG CTGGAGTGCAGTGGCTTGATCTCAGCTCACTGCAACCTCCGTCTCCAGGG TTCAAG chr12:23559706-23559806 + 51 1.78e-26 gtcgcccagg ctggagtacaatggcgtgatctcggctcactgcaacctccgcctccaggt chr1:148334988-148335088 + 27 1.94e-24 gtcgcccagg ctggagtgcagtcgcatcatctctgcttcctgcaacctccgcctccaggg ttgaagcgat chr12:121927130-12192723 + 13 2.25e-24 ctcacccagg ctggagtgcagtggtgctatcttggctctctgcaacctctgcctccctgg gttcaagtga chr1:234372902-234373002 - 38 1.01e-21 TCCGCCCAGT CTCGAGTGCAGTGGTGAGAACACGGCTTACTGCAGCCTCAAAATCCTGGA CCCAAAAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:49123770-49123870 2e-29 20_[+3]_30 chr1:32008557-32008657 1.8e-28 2_[+3]_48 chr17:75858491-75858591 1.2e-26 6_[-3]_44 chr12:23559706-23559806 1.8e-26 50_[+3] chr1:148334988-148335088 1.9e-24 26_[+3]_24 chr12:121927130-12192723 2.2e-24 12_[+3]_38 chr1:234372902-234373002 1e-21 37_[-3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG width=50 seqs=7 chrX:49123770-49123870 ( 21) CTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCCAGG 1 chr1:32008557-32008657 ( 3) CTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCAGG 1 chr17:75858491-75858591 ( 7) CTGGAGTGCAGTGGCTTGATCTCAGCTCACTGCAACCTCCGTCTCCAGGG 1 chr12:23559706-23559806 ( 51) CTGGAGTACAATGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCAGGT 1 chr1:148334988-148335088 ( 27) CTGGAGTGCAGTCGCATCATCTCTGCTTCCTGCAACCTCCGCCTCCAGGG 1 chr12:121927130-12192723 ( 13) CTGGAGTGCAGTGGTGCTATCTTGGCTCTCTGCAACCTCTGCCTCCCTGG 1 chr1:234372902-234373002 ( 38) CTCGAGTGCAGTGGTGAGAACACGGCTTACTGCAGCCTCAAAATCCTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30600 bayes= 11.0728 E= 7.4e-056 -945 184 -945 -945 -945 -945 -945 218 -945 -97 162 -945 -945 -945 184 -945 218 -945 -945 -945 -945 -945 184 -945 -945 -945 -945 218 -63 -945 162 -945 -945 184 -945 -945 218 -945 -945 -945 -63 -945 162 -945 -945 -945 -945 218 -945 -97 162 -945 -945 -945 184 -945 -945 135 -945 37 -63 -945 135 -63 -63 3 -945 137 -945 -97 135 -63 218 -945 -945 -945 -63 -945 -945 196 -945 184 -945 -945 -63 -945 -945 196 -945 162 -945 -63 -63 -945 135 -63 -945 -945 184 -945 -945 184 -945 -945 -945 -945 -945 218 -945 135 -945 37 169 -97 -945 -63 -945 184 -945 -945 -945 -945 -945 218 -945 -945 184 -945 -945 184 -945 -945 218 -945 -945 -945 196 -945 -97 -945 -945 184 -945 -945 -945 184 -945 -945 -945 -945 -945 218 -945 184 -945 -945 -63 135 -945 -63 -63 -945 162 -945 -63 135 -945 -63 -63 162 -945 -945 -945 -945 -945 218 -945 184 -945 -945 -945 184 -945 -945 96 62 -945 -63 37 -945 103 -63 -945 -945 184 -945 -63 -945 135 -63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 7 E= 7.4e-056 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.142857 0.000000 0.714286 0.142857 0.142857 0.285714 0.000000 0.571429 0.000000 0.142857 0.714286 0.142857 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.857143 0.000000 0.142857 0.142857 0.000000 0.714286 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 0.714286 0.142857 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.714286 0.000000 0.142857 0.142857 0.000000 0.857143 0.000000 0.142857 0.714286 0.000000 0.142857 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.428571 0.000000 0.142857 0.285714 0.000000 0.571429 0.142857 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.714286 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGTGCAGTGGCGYGATCTCGGCTCACTGCAACCTCCGCCTCCMRGG MEME-3 regular expression -------------------------------------------------------------------------------- CTGGAGTGCAGTGG[CT]G[TC]GATCTCGGCT[CT]ACTGCAACCTCCGCCTCC[AC][GA]GG -------------------------------------------------------------------------------- Time 970.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:129614603-129614703 4.67e-01 100 chr8:30731092-30731192 4.61e-01 100 chr16:18801178-18801278 3.97e-01 100 chr12:54326252-54326352 1.26e-01 100 chr6:28104485-28104585 1.78e-01 100 chr12:45215806-45215906 9.65e-02 100 chr7:140486629-140486729 4.90e-06 12_[+1(3.79e-10)]_66 chr17:42017090-42017190 2.08e-01 100 chr17:1715917-1716017 2.00e-01 100 chr1:52330569-52330669 4.86e-05 55_[+1(1.02e-08)]_23 chr1:174742890-174742990 4.02e-05 55_[-2(4.11e-07)]_18 chr5:36876026-36876126 8.40e-02 100 chr1:1230880-1230980 1.09e-01 100 chr22:19286472-19286572 6.09e-01 100 chr2:88627739-88627839 1.27e-01 100 chr1:182300068-182300168 3.14e-01 100 chr6:30814395-30814495 2.63e-02 24_[+3(3.72e-05)]_26 chr18:1553124-1553224 6.26e-01 100 chr12:29380798-29380898 4.72e-01 100 chr13:92570877-92570977 7.92e-03 44_[+1(1.89e-05)]_34 chr1:33472538-33472638 1.79e-01 100 chr5:176646765-176646865 7.67e-01 100 chr5:181027762-181027862 4.39e-01 100 chr4:24584097-24584197 8.56e-01 100 chr17:4796042-4796142 7.61e-01 100 chr1:75785645-75785745 6.79e-06 73_[+2(5.56e-09)] chr1:33126918-33127018 5.80e-01 100 chr11:111879093-11187919 3.14e-01 100 chr1:55215312-55215412 3.98e-01 100 chr1:51879083-51879183 4.93e-01 100 chr1:205631996-205632096 3.21e-01 100 chr20:25696484-25696584 8.70e-01 100 chr10:11894405-11894505 1.86e-01 100 chr16:27268651-27268751 8.28e-01 100 chr2:69644743-69644843 7.57e-01 100 chr1:46303027-46303127 1.84e-01 100 chr3:183521031-183521131 1.69e-06 41_[+1(8.14e-10)]_37 chr7:12403140-12403240 3.80e-01 100 chr5:140639536-140639636 1.42e-01 100 chr17:21612669-21612769 2.69e-01 100 chr1:58896417-58896517 8.71e-01 100 chr1:159077257-159077357 6.22e-01 100 chr14:28830087-28830187 1.92e-01 100 chr12:6753185-6753285 4.72e-01 100 chr15:60397042-60397142 7.46e-01 100 chr1:234372902-234373002 2.03e-17 37_[-3(1.01e-21)]_13 chr20:45911025-45911125 3.83e-01 100 chr16:29995724-29995824 8.72e-01 100 chr17:35567611-35567711 8.34e-01 100 chr14:23094784-23094884 6.70e-01 100 chrX:30652360-30652460 9.59e-01 100 chr12:104138304-10413840 6.01e-01 100 chr11:108009156-10800925 2.10e-01 100 chr10:35126301-35126401 8.62e-01 100 chr10:24921293-24921393 8.87e-01 100 chr8:103415352-103415452 6.34e-01 100 chr9:128078092-128078192 8.12e-01 100 chr7:149028225-149028325 1.66e-01 100 chr1:25998194-25998294 6.77e-02 100 chr1:155127805-155127905 1.80e-01 100 chr5:141849631-141849731 1.20e-01 100 chr1:161398914-161399014 3.21e-01 100 chr6:31897594-31897694 9.15e-02 100 chr6:26187851-26187951 8.42e-02 46_[-1(4.10e-05)]_32 chr20:35147612-35147712 4.26e-01 100 chr20:50690971-50691071 4.46e-01 100 chr20:52191378-52191478 6.35e-01 100 chr5:169583637-169583737 9.50e-01 100 chr3:9986571-9986671 1.30e-01 100 chr4:187814768-187814868 1.86e-01 100 chr16:22297234-22297334 7.27e-01 100 chr17:39653679-39653779 8.96e-02 100 chr12:108629967-10863006 8.54e-01 100 chr17:78214032-78214132 9.49e-01 100 chr6:26538010-26538110 4.57e-01 100 chr1:25232169-25232269 1.85e-01 100 chr8:6746749-6746849 3.19e-01 100 chr17:62634579-62634679 8.34e-07 9_[+1(6.34e-11)]_35_[+1(8.74e-05)]_\ 12 chr21:36319825-36319925 3.71e-01 100 chr10:74151235-74151335 6.34e-01 100 chr15:89002749-89002849 9.32e-01 100 chr7:134932935-134933035 2.01e-01 100 chr16:87389894-87389994 7.21e-09 65_[-2(3.95e-13)]_8 chr12:93572402-93572502 1.98e-01 100 chr1:99849887-99849987 9.67e-01 100 chr20:50818181-50818281 5.15e-01 100 chr7:91940679-91940779 2.87e-01 100 chr11:17353576-17353676 2.24e-01 100 chr1:212284696-212284796 1.12e-01 100 chr6:136565953-136566053 9.27e-01 100 chr10:48506409-48506509 6.95e-01 100 chrX:135344130-135344230 1.86e-01 100 chr2:24075900-24076000 2.33e-01 100 chr17:48998105-48998205 1.34e-01 100 chr2:68063893-68063993 2.09e-01 100 chrX:47561554-47561654 2.17e-02 26_[-1(7.73e-06)]_52 chr10:102854078-10285417 2.84e-01 100 chr7:101122009-101122109 6.40e-01 100 chr6:73520718-73520818 9.14e-01 100 chr12:38316542-38316642 5.05e-01 100 chr20:32574875-32574975 4.21e-01 100 chr12:104986087-10498618 6.03e-01 100 chr17:42773133-42773233 7.63e-01 100 chr2:151289820-151289920 7.26e-01 100 chr16:71845525-71845625 7.68e-01 100 chr3:101643742-101643842 1.43e-10 63_[-1(6.95e-14)]_15 chr1:239408028-239408128 5.12e-01 100 chr1:92831930-92832030 1.30e-01 100 chr14:73950140-73950240 8.90e-01 100 chr5:173766079-173766179 9.34e-01 100 chr22:17628791-17628891 7.67e-01 100 chr22:19943561-19943661 7.02e-01 100 chr6:83065393-83065493 8.69e-01 100 chr6:157021734-157021834 3.37e-01 100 chr8:128047171-128047271 1.16e-01 100 chr2:69893738-69893838 6.32e-01 100 chr3:170181387-170181487 8.75e-01 100 chr2:27051184-27051284 2.91e-01 100 chr14:55103020-55103120 9.93e-01 100 chr19:40433478-40433578 8.02e-01 100 chr14:72924633-72924733 5.00e-01 100 chr11:123061750-12306185 5.09e-01 100 chr7:12713386-12713486 6.01e-01 100 chr2:3575117-3575217 7.40e-01 100 chr10:68550795-68550895 1.86e-01 100 chr19:51440890-51440990 4.58e-01 100 chr20:35411684-35411784 1.54e-01 100 chr19:44212473-44212573 3.61e-01 100 chr9:97237893-97237993 4.80e-01 100 chr9:41643448-41643548 2.32e-01 100 chr1:151328063-151328163 3.81e-01 100 chr4:7753880-7753980 1.23e-01 100 chr6:2726010-2726110 1.54e-01 77_[+1(7.50e-05)]_1 chr16:9090844-9090944 5.72e-02 100 chr2:8681855-8681955 2.99e-01 100 chr9:134135465-134135565 4.07e-01 100 chr10:30434452-30434552 1.22e-01 100 chr7:106777925-106778025 4.36e-02 100 chr5:178475802-178475902 2.61e-07 48_[-1(3.93e-11)]_30 chr11:9363910-9364010 1.87e-02 67_[+2(4.39e-05)]_6 chr8:126341450-126341550 8.77e-01 100 chr10:73496136-73496236 2.64e-03 23_[+1(3.68e-05)]_55 chr18:3594967-3595067 8.11e-01 100 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chr1:24704980-24705080 8.96e-01 100 chr6:149546136-149546236 9.29e-01 100 chr4:87422277-87422377 5.99e-02 100 chr13:46052350-46052450 7.55e-01 100 chr6:137904455-137904555 4.33e-01 100 chr16:3282897-3282997 3.17e-01 100 chr5:136466511-136466611 9.38e-02 100 chr10:119165061-11916516 2.77e-02 41_[+3(9.37e-05)]_9 chr7:142854105-142854205 1.61e-01 100 chr3:14178167-14178267 6.40e-01 100 chr1:12449086-12449186 1.41e-01 100 chr10:9825459-9825559 2.03e-03 15_[-3(5.78e-05)]_35 chr3:184298638-184298738 9.61e-02 100 chr8:37762651-37762751 5.52e-02 100 chr1:212791710-212791810 6.62e-02 100 chr17:45333072-45333172 3.83e-01 100 chrX:49123770-49123870 6.48e-27 20_[+3(2.05e-29)]_30 chr17:76397619-76397719 4.68e-02 11_[-1(2.44e-05)]_67 chr14:75278620-75278720 3.03e-01 100 chrX:71365547-71365647 2.89e-01 100 chr1:154386572-154386672 4.29e-01 100 chr10:119892410-11989251 4.81e-01 100 chr10:96129595-96129695 1.64e-01 100 chr1:212791488-212791588 1.67e-01 100 chr12:52010170-52010270 6.53e-02 100 chr6:82558249-82558349 5.96e-01 100 chr4:168480853-168480953 1.79e-01 100 chr12:53501220-53501320 4.49e-01 100 chr19:49877551-49877651 6.82e-01 100 chr1:26744301-26744401 1.41e-02 7_[-3(7.12e-05)]_43 chr11:59548923-59549023 4.72e-01 100 chr1:25906143-25906243 7.60e-01 100 chr13:60396832-60396932 1.62e-01 100 chr14:23285676-23285776 5.87e-01 100 chr1:156337884-156337984 1.73e-01 100 chr11:67262895-67262995 3.31e-01 100 chr7:150432228-150432328 6.64e-01 100 chr11:67463963-67464063 6.74e-01 100 chr6:41318876-41318976 7.44e-02 100 chr8:43093606-43093706 7.19e-13 22_[-2(6.66e-15)]_51 chr12:108562507-10856260 1.19e-01 100 chr19:10754907-10755007 9.53e-01 100 chr15:63793668-63793768 6.90e-01 100 chr5:68628058-68628158 1.09e-08 1_[-1(4.94e-12)]_77 chr7:66740144-66740244 1.48e-01 100 chr15:64381107-64381207 6.12e-01 100 chr7:138355243-138355343 9.66e-09 23_[-1(2.41e-11)]_55 chr7:25927487-25927587 1.08e-01 100 chr1:151281478-151281578 7.38e-02 50_[+3(5.55e-05)] chr10:121928022-12192812 8.83e-01 100 chr2:207772698-207772798 1.03e-10 33_[+2(9.95e-14)]_40 chr9:33515572-33515672 6.43e-01 100 chr6:146912809-146912909 1.47e-01 100 chr1:70460945-70461045 5.66e-01 100 chr14:23556172-23556272 4.63e-01 100 chr11:73982340-73982440 8.52e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: indra ********************************************************************************