******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:35468410-35468510 1.0000 100 chr22:32423645-32423745 1.0000 100 chr1:28505844-28505944 1.0000 100 chr19:5690065-5690165 1.0000 100 chr11:66723681-66723781 1.0000 100 chr1:153990733-153990833 1.0000 100 chr1:26408466-26408566 1.0000 100 chr17:41678430-41678530 1.0000 100 chr17:59837721-59837821 1.0000 100 chr6:159789346-159789446 1.0000 100 chr3:41199261-41199361 1.0000 100 chr7:131298551-131298651 1.0000 100 chr1:156590483-156590583 1.0000 100 chr17:12438825-12438925 1.0000 100 chr2:88016214-88016314 1.0000 100 chr4:2008676-2008776 1.0000 100 chr6:27146998-27147098 1.0000 100 chr1:223731817-223731917 1.0000 100 chr1:146376773-146376873 1.0000 100 chr1:93079054-93079154 1.0000 100 chr11:66868258-66868358 1.0000 100 chr6:31834884-31834984 1.0000 100 chr11:65423525-65423625 1.0000 100 chr6:27133671-27133771 1.0000 100 chr1:207605691-207605791 1.0000 100 chr15:65423517-65423617 1.0000 100 chr1:168225402-168225502 1.0000 100 chr1:145465320-145465420 1.0000 100 chr3:12841226-12841326 1.0000 100 chr16:57682792-57682892 1.0000 100 chr12:109093340-10909344 1.0000 100 chr16:9557254-9557354 1.0000 100 chr8:33513327-33513427 1.0000 100 chr6:27890463-27890563 1.0000 100 chr1:244652150-244652250 1.0000 100 chr1:144551483-144551583 1.0000 100 chr6:35468202-35468302 1.0000 100 chr1:37325984-37326084 1.0000 100 chr19:38374556-38374656 1.0000 100 chr3:71873012-71873112 1.0000 100 chr1:120354792-120354892 1.0000 100 chr10:50625397-50625497 1.0000 100 chr11:73787729-73787829 1.0000 100 chr11:125625765-12562586 1.0000 100 chr6:30616942-30617042 1.0000 100 chr4:80069830-80069930 1.0000 100 chr1:148388785-148388885 1.0000 100 chr3:193942513-193942613 1.0000 100 chr7:127392430-127392530 1.0000 100 chr12:6943661-6943761 1.0000 100 chr1:148038457-148038557 1.0000 100 chr7:104983661-104983761 1.0000 100 chr14:50668377-50668477 1.0000 100 chr2:215787471-215787571 1.0000 100 chr10:128695303-12869540 1.0000 100 chr16:67401501-67401601 1.0000 100 chr4:10116910-10117010 1.0000 100 chr11:65051009-65051109 1.0000 100 chr1:16905004-16905104 1.0000 100 chr7:26200457-26200557 1.0000 100 chr6:157323476-157323576 1.0000 100 chr16:17031667-17031767 1.0000 100 chr17:76737022-76737122 1.0000 100 chr14:92575100-92575200 1.0000 100 chr16:88560672-88560772 1.0000 100 chr3:10215409-10215509 1.0000 100 chr7:12687426-12687526 1.0000 100 chr3:198106183-198106283 1.0000 100 chr7:99679530-99679630 1.0000 100 chr10:72691915-72692015 1.0000 100 chr1:84756353-84756453 1.0000 100 chr17:7685857-7685957 1.0000 100 chr7:104943325-104943425 1.0000 100 chr14:105603290-10560339 1.0000 100 chr9:19379963-19380063 1.0000 100 chr2:108356183-108356283 1.0000 100 chr14:72907862-72907962 1.0000 100 chr19:56186817-56186917 1.0000 100 chr20:2470511-2470611 1.0000 100 chrX:41332280-41332380 1.0000 100 chr1:27026881-27026981 1.0000 100 chr3:13002521-13002621 1.0000 100 chr7:100533410-100533510 1.0000 100 chr5:69369528-69369628 1.0000 100 chr6:63572087-63572187 1.0000 100 chr7:130051107-130051207 1.0000 100 chr19:46955412-46955512 1.0000 100 chr1:44775362-44775462 1.0000 100 chr5:62265553-62265653 1.0000 100 chr2:130922329-130922429 1.0000 100 chr2:216932073-216932173 1.0000 100 chr20:63520892-63520992 1.0000 100 chr11:62841558-62841658 1.0000 100 chr4:108620446-108620546 1.0000 100 chr6:47242343-47242443 1.0000 100 chr7:25855081-25855181 1.0000 100 chr22:42661920-42662020 1.0000 100 chr5:119417779-119417879 1.0000 100 chr17:58658931-58659031 1.0000 100 chr11:65502897-65502997 1.0000 100 chr20:5610738-5610838 1.0000 100 chr6:69610052-69610152 1.0000 100 chr8:124815422-124815522 1.0000 100 chr11:65501442-65501542 1.0000 100 chr6:63572288-63572388 1.0000 100 chr11:65503946-65504046 1.0000 100 chr12:50221443-50221543 1.0000 100 chr17:58679321-58679421 1.0000 100 chr6:37257746-37257846 1.0000 100 chr5:96068179-96068279 1.0000 100 chr6:146886695-146886795 1.0000 100 chr14:60734518-60734618 1.0000 100 chr3:197949995-197950095 1.0000 100 chr7:139359661-139359761 1.0000 100 chr1:12448764-12448864 1.0000 100 chr4:151099476-151099576 1.0000 100 chr20:53753014-53753114 1.0000 100 chr14:34982060-34982160 1.0000 100 chr2:2846698-2846798 1.0000 100 chr13:30182193-30182293 1.0000 100 chr5:79588655-79588755 1.0000 100 chr3:24495386-24495486 1.0000 100 chr2:240582924-240583024 1.0000 100 chr1:44721504-44721604 1.0000 100 chr11:47425971-47426071 1.0000 100 chr15:45549067-45549167 1.0000 100 chr3:129399797-129399897 1.0000 100 chr2:195471084-195471184 1.0000 100 chr17:81349749-81349849 1.0000 100 chr15:69452593-69452693 1.0000 100 chr21:46324156-46324256 1.0000 100 chr9:136727916-136728016 1.0000 100 chr6:135192782-135192882 1.0000 100 chr9:127423788-127423888 1.0000 100 chr17:58631497-58631597 1.0000 100 chr17:8110922-8111022 1.0000 100 chr6:26204398-26204498 1.0000 100 chr19:12945625-12945725 1.0000 100 chr2:47176237-47176337 1.0000 100 chr8:124140493-124140593 1.0000 100 chr1:226212601-226212701 1.0000 100 chr16:30775300-30775400 1.0000 100 chr3:156604202-156604302 1.0000 100 chr1:144546186-144546286 1.0000 100 chr3:65607834-65607934 1.0000 100 chr2:26487076-26487176 1.0000 100 chr5:170306236-170306336 1.0000 100 chr3:149186121-149186221 1.0000 100 chr6:27132328-27132428 1.0000 100 chr12:53006317-53006417 1.0000 100 chr8:58553036-58553136 1.0000 100 chr22:22023539-22023639 1.0000 100 chr21:33234519-33234619 1.0000 100 chr6:26216269-26216369 1.0000 100 chr1:28648674-28648774 1.0000 100 chr1:75786065-75786165 1.0000 100 chr6:26285026-26285126 1.0000 100 chr2:178557698-178557798 1.0000 100 chr6:26033297-26033397 1.0000 100 chr6:2714282-2714382 1.0000 100 chr2:101002284-101002384 1.0000 100 chr13:95239879-95239979 1.0000 100 chr17:8162686-8162786 1.0000 100 chr10:87093862-87093962 1.0000 100 chr9:83920665-83920765 1.0000 100 chr16:88686689-88686789 1.0000 100 chr1:16073576-16073676 1.0000 100 chr22:37657557-37657657 1.0000 100 chr3:138863525-138863625 1.0000 100 chr1:145280965-145281065 1.0000 100 chr13:41306326-41306426 1.0000 100 chr1:143720319-143720419 1.0000 100 chr19:17985072-17985172 1.0000 100 chr11:64271524-64271624 1.0000 100 chr15:88621422-88621522 1.0000 100 chr17:47176347-47176447 1.0000 100 chr17:16216945-16217045 1.0000 100 chr1:120942442-120942542 1.0000 100 chr19:2269295-2269395 1.0000 100 chr8:145052219-145052319 1.0000 100 chr1:37474579-37474679 1.0000 100 chr15:65295968-65296068 1.0000 100 chr7:35800660-35800760 1.0000 100 chr3:170490796-170490896 1.0000 100 chr2:65438672-65438772 1.0000 100 chr1:37474379-37474479 1.0000 100 chr1:28581584-28581684 1.0000 100 chr6:26157559-26157659 1.0000 100 chr1:153990533-153990633 1.0000 100 chr17:29847236-29847336 1.0000 100 chrX:48521082-48521182 1.0000 100 chr15:30999621-30999721 1.0000 100 chr16:24537744-24537844 1.0000 100 chr19:46788334-46788434 1.0000 100 chr8:21918733-21918833 1.0000 100 chr2:152719174-152719274 1.0000 100 chr11:65497325-65497425 1.0000 100 chr1:45521605-45521705 1.0000 100 chr2:68354810-68354910 1.0000 100 chr6:27528638-27528738 1.0000 100 chr17:50866062-50866162 1.0000 100 chr1:16513752-16513852 1.0000 100 chr6:15020284-15020384 1.0000 100 chr1:182869193-182869293 1.0000 100 chr1:154999057-154999157 1.0000 100 chr6:37423786-37423886 1.0000 100 chr5:176837550-176837650 1.0000 100 chr19:3985171-3985271 1.0000 100 chr1:28509887-28509987 1.0000 100 chr5:91379928-91380028 1.0000 100 chr11:120236494-12023659 1.0000 100 chr5:181243611-181243711 1.0000 100 chr2:121530747-121530847 1.0000 100 chr2:71130426-71130526 1.0000 100 chr6:26031775-26031875 1.0000 100 chr17:43875607-43875707 1.0000 100 chr7:156949503-156949603 1.0000 100 chr1:146051838-146051938 1.0000 100 chr18:3448204-3448304 1.0000 100 chr1:144552087-144552187 1.0000 100 chr12:14923936-14924036 1.0000 100 chr3:152205370-152205470 1.0000 100 chr1:11909551-11909651 1.0000 100 chr11:61498990-61499090 1.0000 100 chr11:1940710-1940810 1.0000 100 chr1:27154857-27154957 1.0000 100 chr5:139273891-139273991 1.0000 100 chr12:122423740-12242384 1.0000 100 chr6:7156295-7156395 1.0000 100 chr7:149624451-149624551 1.0000 100 chr6:20401675-20401775 1.0000 100 chr5:132666263-132666363 1.0000 100 chr5:8014104-8014204 1.0000 100 chr6:15210971-15211071 1.0000 100 chr6:67888890-67888990 1.0000 100 chr3:169266976-169267076 1.0000 100 chr6:26026971-26027071 1.0000 100 chr3:196081811-196081911 1.0000 100 chr2:68438722-68438822 1.0000 100 chr12:109477425-10947752 1.0000 100 chr3:12556762-12556862 1.0000 100 chr5:181244003-181244103 1.0000 100 chr14:35367199-35367299 1.0000 100 chr17:42017382-42017482 1.0000 100 chr6:26056115-26056215 1.0000 100 chr1:156282521-156282621 1.0000 100 chr10:16891739-16891839 1.0000 100 chr3:197484254-197484354 1.0000 100 chr10:72626307-72626407 1.0000 100 chr6:30955430-30955530 1.0000 100 chr21:36320487-36320587 1.0000 100 chr5:54310513-54310613 1.0000 100 chr6:73520728-73520828 1.0000 100 chr2:38751079-38751179 1.0000 100 chr17:37400338-37400438 1.0000 100 chr7:65927800-65927900 1.0000 100 chr1:210373899-210373999 1.0000 100 chr21:45073641-45073741 1.0000 100 chr17:49764173-49764273 1.0000 100 chr8:127566655-127566755 1.0000 100 chr5:16528296-16528396 1.0000 100 chr6:159082062-159082162 1.0000 100 chr1:51878413-51878513 1.0000 100 chr17:75784884-75784984 1.0000 100 chr6:44246883-44246983 1.0000 100 chr6:157323265-157323365 1.0000 100 chr4:151055549-151055649 1.0000 100 chr6:28220682-28220782 1.0000 100 chr3:133425230-133425330 1.0000 100 chr11:62841351-62841451 1.0000 100 chr21:35272401-35272501 1.0000 100 chr1:35580890-35580990 1.0000 100 chr11:66421543-66421643 1.0000 100 chr19:48970040-48970140 1.0000 100 chr11:65423326-65423426 1.0000 100 chr5:91383032-91383132 1.0000 100 chr10:73742076-73742176 1.0000 100 chr1:156491850-156491950 1.0000 100 chr6:7723490-7723590 1.0000 100 chr6:42781685-42781785 1.0000 100 chr19:5821671-5821771 1.0000 100 chr11:118126367-11812646 1.0000 100 chr7:24979371-24979471 1.0000 100 chr5:138465584-138465684 1.0000 100 chr1:11908258-11908358 1.0000 100 chr6:26156862-26156962 1.0000 100 chr21:35964147-35964247 1.0000 100 chr5:172958297-172958397 1.0000 100 chr4:793578-793678 1.0000 100 chr11:68468169-68468269 1.0000 100 chr1:37469589-37469689 1.0000 100 chr15:58111668-58111768 1.0000 100 chr17:42017631-42017731 1.0000 100 chr17:45148260-45148360 1.0000 100 chr1:109930564-109930664 1.0000 100 chr11:9051236-9051336 1.0000 100 chr5:103119516-103119616 1.0000 100 chr17:59527615-59527715 1.0000 100 chr5:10353487-10353587 1.0000 100 chr11:2699724-2699824 1.0000 100 chr11:1351488-1351588 1.0000 100 chr6:27592624-27592724 1.0000 100 chr6:27592424-27592524 1.0000 100 chr1:173867669-173867769 1.0000 100 chr12:49161370-49161470 1.0000 100 chr16:2155034-2155134 1.0000 100 chr5:123512035-123512135 1.0000 100 chr8:21918533-21918633 1.0000 100 chr12:24933815-24933915 1.0000 100 chr1:108706660-108706760 1.0000 100 chr15:87576762-87576862 1.0000 100 chr7:100119094-100119194 1.0000 100 chr7:2873972-2874072 1.0000 100 chr17:58328876-58328976 1.0000 100 chr13:44692197-44692297 1.0000 100 chr7:75842973-75843073 1.0000 100 chr6:43759419-43759519 1.0000 100 chr21:29555595-29555695 1.0000 100 chr5:112548169-112548269 1.0000 100 chr4:99949984-99950084 1.0000 100 chr19:13155329-13155429 1.0000 100 chr7:99465868-99465968 1.0000 100 chr4:74095524-74095624 1.0000 100 chr1:16895960-16896060 1.0000 100 chrX:153925543-153925643 1.0000 100 chr18:3448437-3448537 1.0000 100 chrX:154398164-154398264 1.0000 100 chr19:5308846-5308946 1.0000 100 chr1:19878309-19878409 1.0000 100 chr6:29814830-29814930 1.0000 100 chr3:112640971-112641071 1.0000 100 chr11:121226416-12122651 1.0000 100 chr10:50326783-50326883 1.0000 100 chr2:112584302-112584402 1.0000 100 chr18:9013985-9014085 1.0000 100 chr11:93741206-93741306 1.0000 100 chr14:57009813-57009913 1.0000 100 chr6:3938953-3939053 1.0000 100 chr17:43361025-43361125 1.0000 100 chr6:26103787-26103887 1.0000 100 chr20:45934671-45934771 1.0000 100 chr7:130141427-130141527 1.0000 100 chr22:50117232-50117332 1.0000 100 chr19:48445341-48445441 1.0000 100 chr22:22703675-22703775 1.0000 100 chr5:174188233-174188333 1.0000 100 chrX:16771479-16771579 1.0000 100 chr9:137670685-137670785 1.0000 100 chr6:26216853-26216953 1.0000 100 chr2:10448150-10448250 1.0000 100 chr1:37479476-37479576 1.0000 100 chr17:18182954-18183054 1.0000 100 chr6:42050313-42050413 1.0000 100 chr21:42462369-42462469 1.0000 100 chr1:148388240-148388340 1.0000 100 chr11:111926989-11192708 1.0000 100 chr10:68331832-68331932 1.0000 100 chr2:168453352-168453452 1.0000 100 chr9:4656537-4656637 1.0000 100 chr1:148263352-148263452 1.0000 100 chr12:55966150-55966250 1.0000 100 chr3:186783363-186783463 1.0000 100 chr22:30444808-30444908 1.0000 100 chr2:63218755-63218855 1.0000 100 chr1:146409803-146409903 1.0000 100 chr6:85678458-85678558 1.0000 100 chr6:27837259-27837359 1.0000 100 chr6:28220473-28220573 1.0000 100 chr15:90233802-90233902 1.0000 100 chr17:58666365-58666465 1.0000 100 chr1:26695449-26695549 1.0000 100 chr11:448215-448315 1.0000 100 chr15:65610911-65611011 1.0000 100 chr6:30720132-30720232 1.0000 100 chrUn_KI270467v1:2058-25 1.0000 100 chr7:105013379-105013479 1.0000 100 chr21:45167863-45167963 1.0000 100 chr19:11597420-11597520 1.0000 100 chr6:31736271-31736371 1.0000 100 chr9:134206275-134206375 1.0000 100 chr12:83150384-83150484 1.0000 100 chr1:150235838-150235938 1.0000 100 chr6:37497228-37497328 1.0000 100 chr1:207605895-207605995 1.0000 100 chr5:179732605-179732705 1.0000 100 chr10:101818203-10181830 1.0000 100 chr8:49046529-49046629 1.0000 100 chr4:183349178-183349278 1.0000 100 chr6:26122932-26123032 1.0000 100 chr20:50958265-50958365 1.0000 100 chr12:76745608-76745708 1.0000 100 chr1:109099971-109100071 1.0000 100 chr3:9396287-9396387 1.0000 100 chr22:42615142-42615242 1.0000 100 chr19:48204132-48204232 1.0000 100 chr5:134758560-134758660 1.0000 100 chr2:46331993-46332093 1.0000 100 chr7:25124980-25125080 1.0000 100 chr1:46340571-46340671 1.0000 100 chr6:15211174-15211274 1.0000 100 chr5:138465384-138465484 1.0000 100 chr19:54638702-54638802 1.0000 100 chr1:245561706-245561806 1.0000 100 chr16:70523649-70523749 1.0000 100 chr12:103907673-10390777 1.0000 100 chr1:160726024-160726124 1.0000 100 chr12:120291701-12029180 1.0000 100 chr1:170073321-170073421 1.0000 100 chr6:136289763-136289863 1.0000 100 chr6:27132964-27133064 1.0000 100 chr1:27830626-27830726 1.0000 100 chr1:120850677-120850777 1.0000 100 chr2:161160188-161160288 1.0000 100 chr11:62855627-62855727 1.0000 100 chr16:70804699-70804799 1.0000 100 chr16:87774768-87774868 1.0000 100 chr7:18123441-18123541 1.0000 100 chr17:76601951-76602051 1.0000 100 chr7:55928269-55928369 1.0000 100 chr10:42782488-42782588 1.0000 100 chr15:44726894-44726994 1.0000 100 chr2:65438472-65438572 1.0000 100 chr14:92108691-92108791 1.0000 100 chr1:160343112-160343212 1.0000 100 chr12:14257489-14257589 1.0000 100 chr11:10454802-10454902 1.0000 100 chr1_KI270713v1_random:2 1.0000 100 chr19:1021444-1021544 1.0000 100 chr6:30872493-30872593 1.0000 100 chr1:9009397-9009497 1.0000 100 chr14:74946233-74946333 1.0000 100 chr6:15621615-15621715 1.0000 100 chr4:105708456-105708556 1.0000 100 chr7:139359395-139359495 1.0000 100 chr9:135009843-135009943 1.0000 100 chr16:2152795-2152895 1.0000 100 chr17:64506017-64506117 1.0000 100 chr5:138465820-138465920 1.0000 100 chr15:92900130-92900230 1.0000 100 chr2:121075014-121075114 1.0000 100 chr3:170699514-170699614 1.0000 100 chr7:111528179-111528279 1.0000 100 chr5:77778936-77779036 1.0000 100 chr4:38323083-38323183 1.0000 100 chr3:39406492-39406592 1.0000 100 chr22:38034523-38034623 1.0000 100 chr9:98789697-98789797 1.0000 100 chr20:50790609-50790709 1.0000 100 chrX:118719899-118719999 1.0000 100 chr19:46955208-46955308 1.0000 100 chr16:2152593-2152693 1.0000 100 chr17:51153352-51153452 1.0000 100 chr10:103367770-10336787 1.0000 100 chr4:83034601-83034701 1.0000 100 chr1:93079260-93079360 1.0000 100 chr1:39897186-39897286 1.0000 100 chr10:99620875-99620975 1.0000 100 chr6:27809860-27809960 1.0000 100 chr11:12764454-12764554 1.0000 100 chr15:35548307-35548407 1.0000 100 chr2:54589091-54589191 1.0000 100 chr2:178522933-178523033 1.0000 100 chr6:27867224-27867324 1.0000 100 chr3:9397171-9397271 1.0000 100 chr22:29152545-29152645 1.0000 100 chr1:146387304-146387404 1.0000 100 chr22:17638555-17638655 1.0000 100 chr4:77075725-77075825 1.0000 100 chr1:23691584-23691684 1.0000 100 chr12:101678092-10167819 1.0000 100 chr17:43367736-43367836 1.0000 100 chr6:26156201-26156301 1.0000 100 chr7:1028145-1028245 1.0000 100 chr6:28720263-28720363 1.0000 100 chr2:190272228-190272328 1.0000 100 chr3:71063753-71063853 1.0000 100 chr3:24519655-24519755 1.0000 100 chr12:131671211-13167131 1.0000 100 chr19:49728617-49728717 1.0000 100 chr2:69893716-69893816 1.0000 100 chr15:65304560-65304660 1.0000 100 chr19:50329477-50329577 1.0000 100 chr6:42217600-42217700 1.0000 100 chr6:31665335-31665435 1.0000 100 chr3:142883929-142884029 1.0000 100 chr11:134254388-13425448 1.0000 100 chr6:110874556-110874656 1.0000 100 chr6:33271895-33271995 1.0000 100 chr1:224113881-224113981 1.0000 100 chr12:120292867-12029296 1.0000 100 chr6:26204604-26204704 1.0000 100 chr16:31179926-31180026 1.0000 100 chr10:17022793-17022893 1.0000 100 chr22:42615343-42615443 1.0000 100 chr17:10790828-10790928 1.0000 100 chr7:104983861-104983961 1.0000 100 chr19:51136851-51136951 1.0000 100 chr12:12267161-12267261 1.0000 100 chr2:30661140-30661240 1.0000 100 chr11:65051215-65051315 1.0000 100 chr1:179882553-179882653 1.0000 100 chr1:78004200-78004300 1.0000 100 chr11:64484270-64484370 1.0000 100 chr12:120291482-12029158 1.0000 100 chr1:25430102-25430202 1.0000 100 chr11:73656930-73657030 1.0000 100 chr19:58387032-58387132 1.0000 100 chr20:35741937-35742037 1.0000 100 chr1:232868839-232868939 1.0000 100 chr15:65304773-65304873 1.0000 100 chr6:27892863-27892963 1.0000 100 chr6:3118065-3118165 1.0000 100 chr1:27066158-27066258 1.0000 100 chr6:41787484-41787584 1.0000 100 chr7:107010093-107010193 1.0000 100 chr21:25607235-25607335 1.0000 100 chr2:178076096-178076196 1.0000 100 chr2:101002082-101002182 1.0000 100 chr16:23678466-23678566 1.0000 100 chr1:212791610-212791710 1.0000 100 chr1:148522410-148522510 1.0000 100 chr5:67003691-67003791 1.0000 100 chr5:91380130-91380230 1.0000 100 chr2:68426372-68426472 1.0000 100 chr5:91381640-91381740 1.0000 100 chr1:44819659-44819759 1.0000 100 chr1:101167174-101167274 1.0000 100 chr2:61538030-61538130 1.0000 100 chr6:170552951-170553051 1.0000 100 chr6:14967116-14967216 1.0000 100 chr16:8109513-8109613 1.0000 100 chr20:34303116-34303216 1.0000 100 chr9:133030767-133030867 1.0000 100 chr19:1438280-1438380 1.0000 100 chr6:27133185-27133285 1.0000 100 chr16:5187458-5187558 1.0000 100 chr1:144412413-144412513 1.0000 100 chr17:58332205-58332305 1.0000 100 chr12:6890775-6890875 1.0000 100 chr11:130069670-13006977 1.0000 100 chr15:74760265-74760365 1.0000 100 chr4:73259016-73259116 1.0000 100 chr1:144546392-144546492 1.0000 100 chr7:155069870-155069970 1.0000 100 chr16:8991899-8991999 1.0000 100 chr5:95729014-95729114 1.0000 100 chr8:116602420-116602520 1.0000 100 chr3:9396084-9396184 1.0000 100 chr17:44288355-44288455 1.0000 100 chr14:56216923-56217023 1.0000 100 chr19:4769405-4769505 1.0000 100 chr17:39623498-39623598 1.0000 100 chr11:4161216-4161316 1.0000 100 chr17:17352215-17352315 1.0000 100 chr10:80749845-80749945 1.0000 100 chr16:9091412-9091512 1.0000 100 chr17:8173271-8173371 1.0000 100 chr4:184193760-184193860 1.0000 100 chr2:177179502-177179602 1.0000 100 chr8:108787091-108787191 1.0000 100 chr1:222617870-222617970 1.0000 100 chr3:25592370-25592470 1.0000 100 chr1:150579296-150579396 1.0000 100 chr3:32380086-32380186 1.0000 100 chr7:40134393-40134493 1.0000 100 chr6:156652201-156652301 1.0000 100 chr20:36367844-36367944 1.0000 100 chr17:43315752-43315852 1.0000 100 chr4:80232693-80232793 1.0000 100 chr17:44069871-44069971 1.0000 100 chr9:137241081-137241181 1.0000 100 chr2:151828615-151828715 1.0000 100 chr2:151933379-151933479 1.0000 100 chr2:65943394-65943494 1.0000 100 chr2:157251860-157251960 1.0000 100 chr5:173858268-173858368 1.0000 100 chr4:37561294-37561394 1.0000 100 chr5:56725598-56725698 1.0000 100 chr2:112275159-112275259 1.0000 100 chr1:52330106-52330206 1.0000 100 chr6:16265653-16265753 1.0000 100 chr20:58619795-58619895 1.0000 100 chr19:5434392-5434492 1.0000 100 chr8:144792104-144792204 1.0000 100 chr15:90648758-90648858 1.0000 100 chr12:56117865-56117965 1.0000 100 chr21:45073853-45073953 1.0000 100 chr15:58332127-58332227 1.0000 100 chr2:208265611-208265711 1.0000 100 chr3:69079260-69079360 1.0000 100 chr10:92829090-92829190 1.0000 100 chr1:149636608-149636708 1.0000 100 chr6:163777270-163777370 1.0000 100 chr19:49487375-49487475 1.0000 100 chr20:59020924-59021024 1.0000 100 chr11:75399326-75399426 1.0000 100 chr11:65422617-65422717 1.0000 100 chr19:17405645-17405745 1.0000 100 chr1:148402570-148402670 1.0000 100 chr7:23531717-23531817 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.229 C 0.271 G 0.271 T 0.229 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.237 C 0.263 G 0.263 T 0.237 ******************************************************************************** ******************************************************************************** MOTIF AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 width = 43 sites = 6 llr = 308 E-value = 1.9e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::58::::3::::2:a:::::::a::::::::a:::::::7a pos.-specific C ::a5::::3:5:75:::::::a:::aa7a::5:::::aaaa:: probability G :5::2::5:7::3:8a::a:a::a::::::a:a::::::::3: matrix T :5:::aa57:5a:5:::a:a::a::::3:a:5::aaa:::::: bits 2.1 * ** * ** * * * * **** * 1.9 * * ** * ************ *** ********* * 1.7 * * ** * ************ *** ********* * 1.5 * * *** * ************ *** ********* * Relative 1.2 * * *** * ************* *** ********* * Entropy 1.0 ******************************************* (74.1 bits) 0.8 ******************************************* 0.6 ******************************************* 0.4 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel AGCAATTGTGCTCCGGATGTGCTGACCCCTGCGATTTCCCCAA consensus T C TCAT GT T T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr1:148402570-148402670 + 5 1.36e-24 gctt agcaattttactctggatgtgctgacccctgtgatttccccaa atgagggaat chr1:120850677-120850777 - 3 3.17e-24 GGCGAGGGTT ATCCATTGTGTTCCGGATGTGCTGACCTCTGCGATTTCCCCAA AC chr1:145280965-145281065 + 12 4.72e-24 ggcgaagctt atccattgcgttccggatgtgctgacccctgcgatttccccaa gtgtgggaaa chr1:149636608-149636708 + 18 9.81e-24 agcaaggctt agcaattttgctgtggatgtgctgacccctgtgatttccccga atgtgggaat chr1:148522410-148522510 + 52 4.27e-23 gtcgcggctt atccattgcgttccagatgtgctgacctctgcgatttccccaa atgtgg chr1:120942442-120942542 + 18 6.46e-23 agcaaggctt agcagttttactgtggatgtgctgacccctgtgatttccccga atgtgggaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:148402570-148402670 1.4e-24 4_[+1]_53 chr1:120850677-120850777 3.2e-24 2_[-1]_55 chr1:145280965-145281065 4.7e-24 11_[+1]_46 chr1:149636608-149636708 9.8e-24 17_[+1]_40 chr1:148522410-148522510 4.3e-23 51_[+1]_6 chr1:120942442-120942542 6.5e-23 17_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA width=43 seqs=6 chr1:148402570-148402670 ( 5) AGCAATTTTACTCTGGATGTGCTGACCCCTGTGATTTCCCCAA 1 chr1:120850677-120850777 ( 3) ATCCATTGTGTTCCGGATGTGCTGACCTCTGCGATTTCCCCAA 1 chr1:145280965-145281065 ( 12) ATCCATTGCGTTCCGGATGTGCTGACCCCTGCGATTTCCCCAA 1 chr1:149636608-149636708 ( 18) AGCAATTTTGCTGTGGATGTGCTGACCCCTGTGATTTCCCCGA 1 chr1:148522410-148522510 ( 52) ATCCATTGCGTTCCAGATGTGCTGACCTCTGCGATTTCCCCAA 1 chr1:120942442-120942542 ( 18) AGCAGTTTTACTGTGGATGTGCTGACCCCTGTGATTTCCCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 6.15622 E= 1.9e-037 207 -923 -923 -923 -923 -923 93 107 -923 193 -923 -923 107 93 -923 -923 181 -923 -65 -923 -923 -923 -923 207 -923 -923 -923 207 -923 -923 93 107 -923 34 -923 149 49 -923 134 -923 -923 93 -923 107 -923 -923 -923 207 -923 134 34 -923 -923 93 -923 107 -51 -923 166 -923 -923 -923 193 -923 207 -923 -923 -923 -923 -923 -923 207 -923 -923 193 -923 -923 -923 -923 207 -923 -923 193 -923 -923 193 -923 -923 -923 -923 -923 207 -923 -923 193 -923 207 -923 -923 -923 -923 193 -923 -923 -923 193 -923 -923 -923 134 -923 49 -923 193 -923 -923 -923 -923 -923 207 -923 -923 193 -923 -923 93 -923 107 -923 -923 193 -923 207 -923 -923 -923 -923 -923 -923 207 -923 -923 -923 207 -923 -923 -923 207 -923 193 -923 -923 -923 193 -923 -923 -923 193 -923 -923 -923 193 -923 -923 149 -923 34 -923 207 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 6 E= 1.9e-037 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.666667 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.500000 0.000000 0.500000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA MEME-1 regular expression -------------------------------------------------------------------------------- A[GT]C[AC]ATT[GT][TC][GA][CT]T[CG][CT]GGATGTGCTGACC[CT]CTG[CT]GATTTCCCC[AG]A -------------------------------------------------------------------------------- Time 353.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 width = 31 sites = 11 llr = 342 E-value = 4.8e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:2aa5:::37::3:7:a9:::1:221a3:1 pos.-specific C ::::::8:63:6::81:::4::::::4::2: probability G 8a8::2:::531:7:2::1:::9:78::7:9 matrix T :::::42a4::3a:2:a::6aa:a1:5::8: bits 2.1 ** * * ** ** * * 1.9 * ** * * ** ** * * 1.7 * ** * * *** ** * * 1.5 * ** * * *** **** * ** Relative 1.2 ***** ** * * * *** **** * * ** Entropy 1.0 ***** *** * ************ * **** (44.8 bits) 0.8 ***** *** **************** **** 0.6 ********* ********************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GGGAAACTCGACTGCATAATTTGTGGTAGTG consensus T TAGT A C C A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:148402570-148402670 + 52 1.67e-17 ccccaaatga gggaatctcgactacataatttgtggcagtg gggaactgtt chr17:58679321-58679421 - 30 1.67e-17 CTACAAATGT GGGAAACTTAATTGCATAATTTGTGGTAGTG GGGACTATGT chr1:146051838-146051938 - 69 7.36e-17 T GGGAAACTTGACTGTATAATTTGTGGCAGTG GTAGACTGCA chr1:120942442-120942542 + 65 1.75e-16 ccccgaatgt gggaatcttgattacataatttgtggcagtg gggaa chr1:148263352-148263452 + 22 3.02e-16 tcctaaatgt aggaaattccactgcataatttgtggtagtg gggggggctg chr1:149636608-149636708 + 65 5.00e-16 ccccgaatgt gggaatctccattacataacttgtggcagtg gggaa chr17:58658931-58659031 - 44 1.71e-15 TCCCCGAATG AGAAAACTCGGCTGCATAACTTGTGGTAGTG GGGGACTGCT chr1:145280965-145281065 + 59 5.99e-15 ccccaagtgt gggaaactcgagtgcataatttgtgatagta gggaactacg chr1:144546186-144546286 - 21 6.10e-14 TCTCTAACGT GGGAAGCTCAGCTGCGTAACTTGTAGTAACG AAGCGGAAGT chr1:146387304-146387404 + 44 9.55e-14 tctccaaggt gggaagctcagctgtgtaatttgtagtaACG AAGCAGAAGT chr10:50625397-50625497 - 32 7.34e-12 GGAAAACTAT GGAAATTTTCACTGCCTAGCTTATTAAAATG GACTGCTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:148402570-148402670 1.7e-17 51_[+2]_18 chr17:58679321-58679421 1.7e-17 29_[-2]_40 chr1:146051838-146051938 7.4e-17 68_[-2]_1 chr1:120942442-120942542 1.8e-16 64_[+2]_5 chr1:148263352-148263452 3e-16 21_[+2]_48 chr1:149636608-149636708 5e-16 64_[+2]_5 chr17:58658931-58659031 1.7e-15 43_[-2]_26 chr1:145280965-145281065 6e-15 58_[+2]_11 chr1:144546186-144546286 6.1e-14 20_[-2]_49 chr1:146387304-146387404 9.6e-14 43_[+2]_26 chr10:50625397-50625497 7.3e-12 31_[-2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAAWCTYVACTGCATAAYTTGTGGYAGTG width=31 seqs=11 chr1:148402570-148402670 ( 52) GGGAATCTCGACTACATAATTTGTGGCAGTG 1 chr17:58679321-58679421 ( 30) GGGAAACTTAATTGCATAATTTGTGGTAGTG 1 chr1:146051838-146051938 ( 69) GGGAAACTTGACTGTATAATTTGTGGCAGTG 1 chr1:120942442-120942542 ( 65) GGGAATCTTGATTACATAATTTGTGGCAGTG 1 chr1:148263352-148263452 ( 22) AGGAAATTCCACTGCATAATTTGTGGTAGTG 1 chr1:149636608-149636708 ( 65) GGGAATCTCCATTACATAACTTGTGGCAGTG 1 chr17:58658931-58659031 ( 44) AGAAAACTCGGCTGCATAACTTGTGGTAGTG 1 chr1:145280965-145281065 ( 59) GGGAAACTCGAGTGCATAATTTGTGATAGTA 1 chr1:144546186-144546286 ( 21) GGGAAGCTCAGCTGCGTAACTTGTAGTAACG 1 chr1:146387304-146387404 ( 44) GGGAAGCTCAGCTGTGTAATTTGTAGTAACG 1 chr10:50625397-50625497 ( 32) GGAAATTTTCACTGCCTAGCTTATTAAAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.925 E= 4.8e-046 -38 -1010 164 -1010 -1010 -1010 193 -1010 -38 -1010 164 -1010 207 -1010 -1010 -1010 207 -1010 -1010 -1010 94 -1010 -53 61 -1010 164 -1010 -38 -1010 -1010 -1010 207 -1010 128 -1010 61 20 5 79 -1010 161 -1010 5 -1010 -1010 128 -153 20 -1010 -1010 -1010 207 20 -1010 147 -1010 -1010 164 -1010 -38 161 -153 -53 -1010 -1010 -1010 -1010 207 207 -1010 -1010 -1010 194 -1010 -153 -1010 -1010 47 -1010 142 -1010 -1010 -1010 207 -1010 -1010 -1010 207 -138 -1010 179 -1010 -1010 -1010 -1010 207 -38 -1010 147 -138 -38 -1010 164 -1010 -138 47 -1010 120 207 -1010 -1010 -1010 20 -1010 147 -1010 -1010 -53 -1010 178 -138 -1010 179 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 11 E= 4.8e-046 0.181818 0.000000 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.181818 0.363636 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.636364 0.000000 0.363636 0.272727 0.272727 0.454545 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.636364 0.090909 0.272727 0.000000 0.000000 0.000000 1.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.818182 0.000000 0.181818 0.727273 0.090909 0.181818 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.727273 0.090909 0.181818 0.000000 0.818182 0.000000 0.090909 0.363636 0.000000 0.545455 1.000000 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.181818 0.000000 0.818182 0.090909 0.000000 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAWCTYVACTGCATAAYTTGTGGYAGTG MEME-2 regular expression -------------------------------------------------------------------------------- GGGAA[AT]CT[CT][GAC][AG][CT]T[GA]CATAA[TC]TTGTGG[TC]A[GA]TG -------------------------------------------------------------------------------- Time 693.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 width = 34 sites = 11 llr = 332 E-value = 6.8e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::29::9:812:7:2611:a:17:2:::4::: pos.-specific C 7::::131:71::7:313:8a:76:5:965::95 probability G 11aa8:::::198:317:9:::::3:7::26a:: matrix T 29::::7913:::3:6:1:1::33:51143::15 bits 2.1 * 1.9 ** ** * 1.7 *** * ** ** * 1.5 *** * ** * * ** * ** Relative 1.2 ******** *** * * ** * * ** Entropy 1.0 ************** ***** ** ** **** (43.6 bits) 0.8 ***************************** **** 0.6 ********************************** 0.4 ********************************** 0.2 ********************************** 0.0 ---------------------------------- Multilevel CTGGGATTACAGGCATGAGCCACCACGCCCGGCC consensus C T TGC C TTGT TTA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------------- chr17:59527615-59527715 + 54 1.93e-16 tcccaaagtg ctgggattacaggtgtgagccatcacacctggcc TCTTATTTTT chr6:15211174-15211274 - 6 4.84e-16 TCTGGAGTAG CTGGGATTACAGGCGCCCGCCACCACGCCCGGCT AAATT chr12:103907673-10390777 - 62 1.04e-15 AAGCG CTGGGCTTACAGGCAGGAGCCACTATGCCCAGCC ATGGAGATGG chr1:27066158-27066258 + 39 1.73e-15 tctcaaagtg ctgggattacaggcatgagccacaacattcagcc cgagtcttag chr19:48970040-48970140 + 16 2.84e-15 tccccagtag ctgggactacaggcacgcaccatcacgctcggct gatttttttt chr1:108706660-108706760 + 27 3.44e-15 tcccaacatg ctgggattatgggcatgagacaccatgctgggcc CAAATAGGAA chr15:65304773-65304873 - 32 5.47e-15 ACCCAATGCA GTGGGATTACCGGCATAAGCCACCGCGCCCAGCC AGAACACTTT chr16:8991899-8991999 - 12 1.83e-14 CCTCCTGTAG TTGGAACTATAGGCATGCGCCACCATGCCTGGTT GGACTTCCTG chr3:10215409-10215509 + 43 1.87e-13 tccaaaagtg ttgggattttagatgtgagccactgtgctgggcc CATATTTTGA chr11:65051215-65051315 + 52 2.89e-13 tccgaagtag ctggaaccacaggcacatgtcaccacgcctggct atttttttat chr3:129399797-129399897 + 52 3.69e-13 tcctgagtag cggggattacaaatatgagccattgttcccagcT ACTGTCTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:59527615-59527715 1.9e-16 53_[+3]_13 chr6:15211174-15211274 4.8e-16 5_[-3]_61 chr12:103907673-10390777 1e-15 61_[-3]_5 chr1:27066158-27066258 1.7e-15 38_[+3]_28 chr19:48970040-48970140 2.8e-15 15_[+3]_51 chr1:108706660-108706760 3.4e-15 26_[+3]_40 chr15:65304773-65304873 5.5e-15 31_[-3]_35 chr16:8991899-8991999 1.8e-14 11_[-3]_55 chr3:10215409-10215509 1.9e-13 42_[+3]_24 chr11:65051215-65051315 2.9e-13 51_[+3]_15 chr3:129399797-129399897 3.7e-13 51_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY width=34 seqs=11 chr17:59527615-59527715 ( 54) CTGGGATTACAGGTGTGAGCCATCACACCTGGCC 1 chr6:15211174-15211274 ( 6) CTGGGATTACAGGCGCCCGCCACCACGCCCGGCT 1 chr12:103907673-10390777 ( 62) CTGGGCTTACAGGCAGGAGCCACTATGCCCAGCC 1 chr1:27066158-27066258 ( 39) CTGGGATTACAGGCATGAGCCACAACATTCAGCC 1 chr19:48970040-48970140 ( 16) CTGGGACTACAGGCACGCACCATCACGCTCGGCT 1 chr1:108706660-108706760 ( 27) CTGGGATTATGGGCATGAGACACCATGCTGGGCC 1 chr15:65304773-65304873 ( 32) GTGGGATTACCGGCATAAGCCACCGCGCCCAGCC 1 chr16:8991899-8991999 ( 12) TTGGAACTATAGGCATGCGCCACCATGCCTGGTT 1 chr3:10215409-10215509 ( 43) TTGGGATTTTAGATGTGAGCCACTGTGCTGGGCC 1 chr11:65051215-65051315 ( 52) CTGGAACCACAGGCACATGTCACCACGCCTGGCT 1 chr3:129399797-129399897 ( 52) CGGGGATTACAAATATGAGCCATTGTTCCCAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 34 n= 40200 bayes= 11.3875 E= 6.8e-037 -1010 147 -153 -38 -1010 -1010 -153 194 -1010 -1010 193 -1010 -1010 -1010 193 -1010 -38 -1010 164 -1010 194 -153 -1010 -1010 -1010 5 -1010 161 -1010 -153 -1010 194 194 -1010 -1010 -138 -1010 147 -1010 20 178 -153 -153 -1010 -138 -1010 179 -1010 -38 -1010 164 -1010 -1010 147 -1010 20 161 -1010 5 -1010 -1010 5 -153 142 -38 -153 147 -1010 142 5 -1010 -138 -138 -1010 179 -1010 -138 164 -1010 -138 -1010 193 -1010 -1010 207 -1010 -1010 -1010 -1010 147 -1010 20 -138 128 -1010 20 161 -1010 5 -1010 -1010 105 -1010 94 -38 -1010 147 -138 -1010 179 -1010 -138 -1010 128 -1010 61 -1010 105 -53 20 61 -1010 128 -1010 -1010 -1010 193 -1010 -1010 179 -1010 -138 -1010 105 -1010 94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 34 nsites= 11 E= 6.8e-037 0.000000 0.727273 0.090909 0.181818 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.090909 0.000000 0.909091 0.909091 0.000000 0.000000 0.090909 0.000000 0.727273 0.000000 0.272727 0.818182 0.090909 0.090909 0.000000 0.090909 0.000000 0.909091 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.727273 0.000000 0.272727 0.727273 0.000000 0.272727 0.000000 0.000000 0.272727 0.090909 0.636364 0.181818 0.090909 0.727273 0.000000 0.636364 0.272727 0.000000 0.090909 0.090909 0.000000 0.909091 0.000000 0.090909 0.818182 0.000000 0.090909 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.090909 0.636364 0.000000 0.272727 0.727273 0.000000 0.272727 0.000000 0.000000 0.545455 0.000000 0.454545 0.181818 0.000000 0.727273 0.090909 0.000000 0.909091 0.000000 0.090909 0.000000 0.636364 0.000000 0.363636 0.000000 0.545455 0.181818 0.272727 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.545455 0.000000 0.454545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY MEME-3 regular expression -------------------------------------------------------------------------------- CTGGGA[TC]TA[CT]AGG[CT][AG][TC]G[AC]GCCA[CT][CT][AG][CT]GC[CT][CT][GA]GC[CT] -------------------------------------------------------------------------------- Time 1005.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:35468410-35468510 7.19e-01 100 chr22:32423645-32423745 9.16e-01 100 chr1:28505844-28505944 1.53e-01 100 chr19:5690065-5690165 8.79e-01 100 chr11:66723681-66723781 6.25e-02 100 chr1:153990733-153990833 8.77e-01 100 chr1:26408466-26408566 8.52e-03 6_[+2(5.43e-05)]_63 chr17:41678430-41678530 3.07e-01 100 chr17:59837721-59837821 4.22e-01 100 chr6:159789346-159789446 1.02e-01 6_[+1(7.85e-05)]_51 chr3:41199261-41199361 4.70e-01 100 chr7:131298551-131298651 6.26e-02 100 chr1:156590483-156590583 6.97e-01 100 chr17:12438825-12438925 7.29e-01 100 chr2:88016214-88016314 4.78e-02 42_[-1(6.80e-05)]_15 chr4:2008676-2008776 1.66e-01 100 chr6:27146998-27147098 5.52e-01 100 chr1:223731817-223731917 6.92e-01 100 chr1:146376773-146376873 4.83e-01 100 chr1:93079054-93079154 9.67e-01 100 chr11:66868258-66868358 2.12e-01 100 chr6:31834884-31834984 9.02e-03 9_[+1(8.91e-05)]_48 chr11:65423525-65423625 8.37e-01 100 chr6:27133671-27133771 8.06e-01 100 chr1:207605691-207605791 3.38e-01 100 chr15:65423517-65423617 8.27e-02 55_[-2(7.14e-05)]_14 chr1:168225402-168225502 5.83e-01 100 chr1:145465320-145465420 5.93e-02 100 chr3:12841226-12841326 4.68e-01 100 chr16:57682792-57682892 4.37e-01 100 chr12:109093340-10909344 5.07e-01 100 chr16:9557254-9557354 4.12e-01 100 chr8:33513327-33513427 6.05e-01 100 chr6:27890463-27890563 7.15e-01 100 chr1:244652150-244652250 5.00e-01 100 chr1:144551483-144551583 8.64e-01 100 chr6:35468202-35468302 2.50e-01 100 chr1:37325984-37326084 9.55e-01 100 chr19:38374556-38374656 5.57e-01 100 chr3:71873012-71873112 6.62e-02 100 chr1:120354792-120354892 9.46e-04 52_[+1(8.64e-06)]_5 chr10:50625397-50625497 4.67e-08 31_[-2(7.34e-12)]_38 chr11:73787729-73787829 1.82e-01 100 chr11:125625765-12562586 4.87e-01 100 chr6:30616942-30617042 5.86e-01 100 chr4:80069830-80069930 6.09e-01 100 chr1:148388785-148388885 7.72e-01 100 chr3:193942513-193942613 8.05e-01 100 chr7:127392430-127392530 8.42e-01 100 chr12:6943661-6943761 3.07e-01 100 chr1:148038457-148038557 2.18e-01 100 chr7:104983661-104983761 8.60e-01 100 chr14:50668377-50668477 3.20e-01 100 chr2:215787471-215787571 1.63e-01 100 chr10:128695303-12869540 5.19e-01 100 chr16:67401501-67401601 3.11e-01 100 chr4:10116910-10117010 1.80e-01 100 chr11:65051009-65051109 2.08e-01 100 chr1:16905004-16905104 2.06e-01 100 chr7:26200457-26200557 7.55e-01 100 chr6:157323476-157323576 5.53e-01 100 chr16:17031667-17031767 2.38e-01 100 chr17:76737022-76737122 8.81e-01 100 chr14:92575100-92575200 1.75e-01 100 chr16:88560672-88560772 2.61e-01 100 chr3:10215409-10215509 1.42e-10 42_[+3(1.87e-13)]_24 chr7:12687426-12687526 3.69e-01 100 chr3:198106183-198106283 5.41e-01 100 chr7:99679530-99679630 7.24e-01 100 chr10:72691915-72692015 7.93e-01 100 chr1:84756353-84756453 2.42e-01 100 chr17:7685857-7685957 8.05e-01 100 chr7:104943325-104943425 8.53e-01 100 chr14:105603290-10560339 9.61e-01 100 chr9:19379963-19380063 7.61e-01 100 chr2:108356183-108356283 1.25e-01 100 chr14:72907862-72907962 9.98e-01 100 chr19:56186817-56186917 4.23e-01 100 chr20:2470511-2470611 8.78e-01 100 chrX:41332280-41332380 7.97e-01 100 chr1:27026881-27026981 7.81e-02 100 chr3:13002521-13002621 6.16e-01 100 chr7:100533410-100533510 8.71e-01 100 chr5:69369528-69369628 6.49e-01 100 chr6:63572087-63572187 5.41e-01 100 chr7:130051107-130051207 2.57e-01 100 chr19:46955412-46955512 2.95e-01 100 chr1:44775362-44775462 6.30e-01 100 chr5:62265553-62265653 9.28e-02 100 chr2:130922329-130922429 5.64e-01 100 chr2:216932073-216932173 2.97e-01 100 chr20:63520892-63520992 1.51e-01 100 chr11:62841558-62841658 5.18e-01 100 chr4:108620446-108620546 2.82e-01 100 chr6:47242343-47242443 4.71e-01 100 chr7:25855081-25855181 8.00e-01 100 chr22:42661920-42662020 9.43e-01 100 chr5:119417779-119417879 3.63e-02 48_[+2(7.49e-05)]_21 chr17:58658931-58659031 4.33e-11 43_[-2(1.71e-15)]_26 chr11:65502897-65502997 9.07e-01 100 chr20:5610738-5610838 2.66e-02 100 chr6:69610052-69610152 8.63e-01 100 chr8:124815422-124815522 3.43e-01 100 chr11:65501442-65501542 7.34e-01 100 chr6:63572288-63572388 7.54e-01 100 chr11:65503946-65504046 6.41e-01 100 chr12:50221443-50221543 6.90e-02 100 chr17:58679321-58679421 5.86e-13 29_[-2(1.67e-17)]_40 chr6:37257746-37257846 5.56e-01 100 chr5:96068179-96068279 3.86e-01 100 chr6:146886695-146886795 7.48e-01 100 chr14:60734518-60734618 8.56e-01 100 chr3:197949995-197950095 2.94e-01 100 chr7:139359661-139359761 8.39e-01 100 chr1:12448764-12448864 1.41e-01 100 chr4:151099476-151099576 9.97e-01 100 chr20:53753014-53753114 8.09e-01 100 chr14:34982060-34982160 5.03e-01 100 chr2:2846698-2846798 7.63e-01 100 chr13:30182193-30182293 1.21e-01 100 chr5:79588655-79588755 2.62e-01 100 chr3:24495386-24495486 9.80e-01 100 chr2:240582924-240583024 2.41e-01 100 chr1:44721504-44721604 8.88e-01 100 chr11:47425971-47426071 7.17e-01 100 chr15:45549067-45549167 3.10e-01 100 chr3:129399797-129399897 1.99e-09 51_[+3(3.69e-13)]_15 chr2:195471084-195471184 7.22e-01 100 chr17:81349749-81349849 6.66e-01 100 chr15:69452593-69452693 3.63e-01 100 chr21:46324156-46324256 3.84e-01 100 chr9:136727916-136728016 7.27e-01 100 chr6:135192782-135192882 8.38e-01 100 chr9:127423788-127423888 1.30e-01 100 chr17:58631497-58631597 3.82e-01 100 chr17:8110922-8111022 3.24e-01 100 chr6:26204398-26204498 3.98e-01 100 chr19:12945625-12945725 6.28e-01 100 chr2:47176237-47176337 7.02e-01 100 chr8:124140493-124140593 9.39e-01 100 chr1:226212601-226212701 9.51e-01 100 chr16:30775300-30775400 9.84e-01 100 chr3:156604202-156604302 1.46e-01 100 chr1:144546186-144546286 2.35e-11 20_[-2(6.10e-14)]_2_[-1(5.97e-05)]_\ 4 chr3:65607834-65607934 4.29e-02 100 chr2:26487076-26487176 1.30e-01 100 chr5:170306236-170306336 7.24e-01 100 chr3:149186121-149186221 8.48e-01 100 chr6:27132328-27132428 8.63e-01 100 chr12:53006317-53006417 6.14e-01 100 chr8:58553036-58553136 6.06e-01 100 chr22:22023539-22023639 8.68e-01 100 chr21:33234519-33234619 3.31e-01 100 chr6:26216269-26216369 4.52e-01 100 chr1:28648674-28648774 2.83e-01 100 chr1:75786065-75786165 4.88e-01 100 chr6:26285026-26285126 4.43e-01 100 chr2:178557698-178557798 1.06e-01 100 chr6:26033297-26033397 8.35e-02 100 chr6:2714282-2714382 1.27e-01 100 chr2:101002284-101002384 2.89e-01 100 chr13:95239879-95239979 7.12e-01 100 chr17:8162686-8162786 9.25e-02 100 chr10:87093862-87093962 8.31e-01 100 chr9:83920665-83920765 9.12e-02 100 chr16:88686689-88686789 5.60e-02 100 chr1:16073576-16073676 9.27e-01 100 chr22:37657557-37657657 1.02e-01 6_[+1(8.09e-05)]_51 chr3:138863525-138863625 7.41e-01 100 chr1:145280965-145281065 1.11e-30 11_[+1(4.72e-24)]_4_[+2(5.99e-15)]_\ 11 chr13:41306326-41306426 9.32e-01 100 chr1:143720319-143720419 7.64e-06 20_[-1(7.97e-10)]_37 chr19:17985072-17985172 6.18e-01 100 chr11:64271524-64271624 2.81e-01 100 chr15:88621422-88621522 8.49e-01 100 chr17:47176347-47176447 3.93e-01 100 chr17:16216945-16217045 6.25e-01 100 chr1:120942442-120942542 4.91e-31 17_[+1(6.46e-23)]_4_[+2(1.75e-16)]_\ 5 chr19:2269295-2269395 4.28e-01 100 chr8:145052219-145052319 6.82e-01 100 chr1:37474579-37474679 8.25e-01 100 chr15:65295968-65296068 4.23e-01 100 chr7:35800660-35800760 2.26e-01 100 chr3:170490796-170490896 2.27e-01 100 chr2:65438672-65438772 8.30e-01 100 chr1:37474379-37474479 9.73e-01 100 chr1:28581584-28581684 6.04e-01 100 chr6:26157559-26157659 2.16e-01 100 chr1:153990533-153990633 4.46e-01 100 chr17:29847236-29847336 4.76e-01 100 chrX:48521082-48521182 8.21e-01 100 chr15:30999621-30999721 2.37e-01 100 chr16:24537744-24537844 2.94e-01 100 chr19:46788334-46788434 8.29e-01 100 chr8:21918733-21918833 6.52e-01 100 chr2:152719174-152719274 2.72e-01 100 chr11:65497325-65497425 3.08e-02 44_[-3(3.01e-05)]_22 chr1:45521605-45521705 9.15e-01 100 chr2:68354810-68354910 3.08e-01 100 chr6:27528638-27528738 6.78e-01 100 chr17:50866062-50866162 9.55e-01 100 chr1:16513752-16513852 8.00e-02 100 chr6:15020284-15020384 6.43e-01 100 chr1:182869193-182869293 8.35e-01 100 chr1:154999057-154999157 8.36e-01 100 chr6:37423786-37423886 9.09e-01 100 chr5:176837550-176837650 8.31e-01 100 chr19:3985171-3985271 9.61e-02 100 chr1:28509887-28509987 2.90e-01 100 chr5:91379928-91380028 9.46e-01 100 chr11:120236494-12023659 8.81e-01 100 chr5:181243611-181243711 7.10e-01 100 chr2:121530747-121530847 2.50e-01 100 chr2:71130426-71130526 1.06e-01 100 chr6:26031775-26031875 3.51e-01 100 chr17:43875607-43875707 2.38e-01 100 chr7:156949503-156949603 6.80e-01 100 chr1:146051838-146051938 6.38e-13 68_[-2(7.36e-17)]_1 chr18:3448204-3448304 3.33e-02 100 chr1:144552087-144552187 9.16e-01 100 chr12:14923936-14924036 2.65e-01 100 chr3:152205370-152205470 3.46e-02 100 chr1:11909551-11909651 8.21e-01 100 chr11:61498990-61499090 8.05e-01 100 chr11:1940710-1940810 2.80e-01 100 chr1:27154857-27154957 2.36e-01 100 chr5:139273891-139273991 8.51e-03 18_[+1(6.10e-05)]_39 chr12:122423740-12242384 4.03e-01 100 chr6:7156295-7156395 6.28e-01 100 chr7:149624451-149624551 8.76e-02 13_[-3(5.06e-05)]_53 chr6:20401675-20401775 1.91e-01 100 chr5:132666263-132666363 8.09e-01 100 chr5:8014104-8014204 7.01e-01 100 chr6:15210971-15211071 2.08e-01 100 chr6:67888890-67888990 3.34e-01 100 chr3:169266976-169267076 6.35e-01 100 chr6:26026971-26027071 7.85e-01 100 chr3:196081811-196081911 7.45e-01 100 chr2:68438722-68438822 8.24e-01 100 chr12:109477425-10947752 7.89e-01 100 chr3:12556762-12556862 1.47e-01 100 chr5:181244003-181244103 4.83e-01 100 chr14:35367199-35367299 8.45e-01 100 chr17:42017382-42017482 4.07e-01 100 chr6:26056115-26056215 3.54e-01 100 chr1:156282521-156282621 3.05e-01 100 chr10:16891739-16891839 5.14e-01 100 chr3:197484254-197484354 5.80e-01 100 chr10:72626307-72626407 5.37e-02 100 chr6:30955430-30955530 9.39e-01 100 chr21:36320487-36320587 9.30e-01 100 chr5:54310513-54310613 7.39e-01 100 chr6:73520728-73520828 1.95e-01 100 chr2:38751079-38751179 8.04e-01 100 chr17:37400338-37400438 2.62e-01 100 chr7:65927800-65927900 7.66e-01 100 chr1:210373899-210373999 9.79e-01 100 chr21:45073641-45073741 7.21e-01 100 chr17:49764173-49764273 4.94e-01 100 chr8:127566655-127566755 6.00e-01 100 chr5:16528296-16528396 5.40e-01 100 chr6:159082062-159082162 7.12e-02 100 chr1:51878413-51878513 3.94e-01 100 chr17:75784884-75784984 9.33e-01 100 chr6:44246883-44246983 1.11e-01 100 chr6:157323265-157323365 8.75e-01 100 chr4:151055549-151055649 4.85e-01 100 chr6:28220682-28220782 4.73e-01 100 chr3:133425230-133425330 1.51e-01 100 chr11:62841351-62841451 3.48e-01 100 chr21:35272401-35272501 6.74e-01 100 chr1:35580890-35580990 5.00e-01 100 chr11:66421543-66421643 6.44e-01 100 chr19:48970040-48970140 2.39e-11 15_[+3(2.84e-15)]_51 chr11:65423326-65423426 7.36e-01 100 chr5:91383032-91383132 2.74e-01 100 chr10:73742076-73742176 1.77e-01 100 chr1:156491850-156491950 3.30e-01 100 chr6:7723490-7723590 9.12e-01 100 chr6:42781685-42781785 5.88e-01 100 chr19:5821671-5821771 4.31e-01 100 chr11:118126367-11812646 6.24e-01 100 chr7:24979371-24979471 8.58e-01 100 chr5:138465584-138465684 8.17e-01 100 chr1:11908258-11908358 5.46e-01 100 chr6:26156862-26156962 1.56e-01 100 chr21:35964147-35964247 1.16e-01 100 chr5:172958297-172958397 8.43e-01 100 chr4:793578-793678 8.94e-01 100 chr11:68468169-68468269 8.15e-01 100 chr1:37469589-37469689 1.45e-01 100 chr15:58111668-58111768 1.99e-01 100 chr17:42017631-42017731 6.99e-01 100 chr17:45148260-45148360 8.15e-01 100 chr1:109930564-109930664 6.56e-01 100 chr11:9051236-9051336 2.96e-01 100 chr5:103119516-103119616 8.60e-01 100 chr17:59527615-59527715 8.55e-13 53_[+3(1.93e-16)]_13 chr5:10353487-10353587 7.95e-01 100 chr11:2699724-2699824 9.87e-01 100 chr11:1351488-1351588 5.69e-01 100 chr6:27592624-27592724 3.44e-01 100 chr6:27592424-27592524 7.77e-01 100 chr1:173867669-173867769 9.91e-01 100 chr12:49161370-49161470 8.10e-01 100 chr16:2155034-2155134 5.91e-01 100 chr5:123512035-123512135 7.40e-01 100 chr8:21918533-21918633 2.01e-01 100 chr12:24933815-24933915 5.46e-01 100 chr1:108706660-108706760 5.47e-11 26_[+3(3.44e-15)]_40 chr15:87576762-87576862 4.51e-01 100 chr7:100119094-100119194 9.80e-01 100 chr7:2873972-2874072 3.35e-01 100 chr17:58328876-58328976 2.38e-01 100 chr13:44692197-44692297 9.04e-01 100 chr7:75842973-75843073 8.44e-02 100 chr6:43759419-43759519 1.00e-01 100 chr21:29555595-29555695 5.29e-02 100 chr5:112548169-112548269 4.60e-01 100 chr4:99949984-99950084 2.39e-01 100 chr19:13155329-13155429 6.22e-01 100 chr7:99465868-99465968 5.66e-01 100 chr4:74095524-74095624 5.74e-01 100 chr1:16895960-16896060 8.31e-01 100 chrX:153925543-153925643 2.80e-01 100 chr18:3448437-3448537 8.57e-01 100 chrX:154398164-154398264 6.39e-01 100 chr19:5308846-5308946 5.19e-01 100 chr1:19878309-19878409 3.02e-01 100 chr6:29814830-29814930 1.93e-01 100 chr3:112640971-112641071 4.82e-01 100 chr11:121226416-12122651 7.41e-01 100 chr10:50326783-50326883 1.67e-01 100 chr2:112584302-112584402 4.04e-01 100 chr18:9013985-9014085 4.77e-01 100 chr11:93741206-93741306 7.48e-01 100 chr14:57009813-57009913 4.65e-01 100 chr6:3938953-3939053 2.12e-02 100 chr17:43361025-43361125 6.61e-01 100 chr6:26103787-26103887 2.35e-01 100 chr20:45934671-45934771 9.33e-01 100 chr7:130141427-130141527 8.95e-01 100 chr22:50117232-50117332 8.42e-01 100 chr19:48445341-48445441 4.27e-01 100 chr22:22703675-22703775 1.62e-01 100 chr5:174188233-174188333 5.80e-01 100 chrX:16771479-16771579 1.50e-01 100 chr9:137670685-137670785 3.99e-01 100 chr6:26216853-26216953 8.43e-01 100 chr2:10448150-10448250 5.58e-01 100 chr1:37479476-37479576 6.97e-01 100 chr17:18182954-18183054 2.06e-01 100 chr6:42050313-42050413 2.37e-01 100 chr21:42462369-42462469 2.26e-01 100 chr1:148388240-148388340 8.13e-02 37_[-1(9.45e-05)]_20 chr11:111926989-11192708 1.98e-01 100 chr10:68331832-68331932 2.69e-01 100 chr2:168453352-168453452 1.39e-01 100 chr9:4656537-4656637 6.41e-01 100 chr1:148263352-148263452 4.04e-13 21_[+2(3.02e-16)]_48 chr12:55966150-55966250 8.93e-02 100 chr3:186783363-186783463 5.20e-01 100 chr22:30444808-30444908 8.04e-01 100 chr2:63218755-63218855 5.29e-01 100 chr1:146409803-146409903 2.55e-01 100 chr6:85678458-85678558 9.38e-01 100 chr6:27837259-27837359 6.87e-01 100 chr6:28220473-28220573 7.86e-01 100 chr15:90233802-90233902 7.81e-01 100 chr17:58666365-58666465 1.40e-03 32_[-1(2.80e-07)]_25 chr1:26695449-26695549 3.95e-02 100 chr11:448215-448315 6.50e-01 100 chr15:65610911-65611011 3.98e-01 100 chr6:30720132-30720232 6.58e-01 100 chrUn_KI270467v1:2058-25 6.44e-01 100 chr7:105013379-105013479 2.91e-01 100 chr21:45167863-45167963 9.28e-01 100 chr19:11597420-11597520 8.45e-01 100 chr6:31736271-31736371 7.39e-01 100 chr9:134206275-134206375 8.02e-01 100 chr12:83150384-83150484 9.49e-01 100 chr1:150235838-150235938 8.39e-01 100 chr6:37497228-37497328 1.07e-02 64_[+3(1.73e-05)]_2 chr1:207605895-207605995 9.15e-01 100 chr5:179732605-179732705 9.10e-01 100 chr10:101818203-10181830 3.06e-02 43_[+1(7.97e-05)]_14 chr8:49046529-49046629 9.28e-01 100 chr4:183349178-183349278 2.36e-01 100 chr6:26122932-26123032 6.85e-01 100 chr20:50958265-50958365 9.82e-01 100 chr12:76745608-76745708 6.90e-01 100 chr1:109099971-109100071 8.84e-01 100 chr3:9396287-9396387 4.83e-01 100 chr22:42615142-42615242 5.24e-02 100 chr19:48204132-48204232 4.24e-01 100 chr5:134758560-134758660 4.50e-01 100 chr2:46331993-46332093 1.25e-02 100 chr7:25124980-25125080 6.06e-01 100 chr1:46340571-46340671 5.57e-01 100 chr6:15211174-15211274 1.85e-11 5_[-3(4.84e-16)]_61 chr5:138465384-138465484 7.85e-01 100 chr19:54638702-54638802 1.01e-01 61_[-2(4.43e-05)]_8 chr1:245561706-245561806 1.03e-01 100 chr16:70523649-70523749 7.40e-01 100 chr12:103907673-10390777 4.70e-13 61_[-3(1.04e-15)]_5 chr1:160726024-160726124 7.99e-01 100 chr12:120291701-12029180 6.12e-01 100 chr1:170073321-170073421 4.21e-01 100 chr6:136289763-136289863 3.60e-01 100 chr6:27132964-27133064 7.65e-01 100 chr1:27830626-27830726 7.82e-01 100 chr1:120850677-120850777 4.06e-19 2_[-1(3.17e-24)]_55 chr2:161160188-161160288 1.83e-01 100 chr11:62855627-62855727 6.35e-01 100 chr16:70804699-70804799 7.93e-01 100 chr16:87774768-87774868 6.27e-01 100 chr7:18123441-18123541 8.89e-01 100 chr17:76601951-76602051 1.80e-01 100 chr7:55928269-55928369 9.63e-01 100 chr10:42782488-42782588 5.25e-01 100 chr15:44726894-44726994 5.16e-01 100 chr2:65438472-65438572 1.12e-02 7_[-2(3.12e-06)]_62 chr14:92108691-92108791 8.65e-01 100 chr1:160343112-160343212 3.24e-01 100 chr12:14257489-14257589 5.85e-01 100 chr11:10454802-10454902 2.99e-01 100 chr1_KI270713v1_random:2 7.76e-01 100 chr19:1021444-1021544 9.02e-01 100 chr6:30872493-30872593 7.46e-01 100 chr1:9009397-9009497 5.88e-01 100 chr14:74946233-74946333 8.83e-01 100 chr6:15621615-15621715 4.58e-01 100 chr4:105708456-105708556 7.84e-02 100 chr7:139359395-139359495 6.93e-01 100 chr9:135009843-135009943 4.02e-01 100 chr16:2152795-2152895 6.59e-01 100 chr17:64506017-64506117 1.37e-01 100 chr5:138465820-138465920 5.70e-01 100 chr15:92900130-92900230 1.85e-01 100 chr2:121075014-121075114 6.86e-01 100 chr3:170699514-170699614 4.31e-01 100 chr7:111528179-111528279 3.54e-02 100 chr5:77778936-77779036 8.32e-01 100 chr4:38323083-38323183 5.42e-01 100 chr3:39406492-39406592 8.03e-01 100 chr22:38034523-38034623 8.82e-02 5_[+2(5.83e-05)]_64 chr9:98789697-98789797 7.24e-01 100 chr20:50790609-50790709 9.39e-01 100 chrX:118719899-118719999 2.43e-01 100 chr19:46955208-46955308 5.70e-01 100 chr16:2152593-2152693 1.42e-01 100 chr17:51153352-51153452 7.80e-01 100 chr10:103367770-10336787 4.36e-01 100 chr4:83034601-83034701 2.99e-01 100 chr1:93079260-93079360 6.27e-01 100 chr1:39897186-39897286 8.49e-02 100 chr10:99620875-99620975 5.01e-01 100 chr6:27809860-27809960 4.76e-01 100 chr11:12764454-12764554 1.13e-01 100 chr15:35548307-35548407 6.11e-01 100 chr2:54589091-54589191 5.41e-01 100 chr2:178522933-178523033 2.94e-01 100 chr6:27867224-27867324 4.27e-01 100 chr3:9397171-9397271 7.88e-01 100 chr22:29152545-29152645 2.75e-01 100 chr1:146387304-146387404 9.08e-10 43_[+2(9.55e-14)]_26 chr22:17638555-17638655 2.31e-01 100 chr4:77075725-77075825 7.19e-02 100 chr1:23691584-23691684 7.61e-02 100 chr12:101678092-10167819 3.05e-01 100 chr17:43367736-43367836 8.82e-01 100 chr6:26156201-26156301 2.03e-01 100 chr7:1028145-1028245 9.60e-01 100 chr6:28720263-28720363 8.05e-01 100 chr2:190272228-190272328 7.36e-01 100 chr3:71063753-71063853 2.90e-01 100 chr3:24519655-24519755 5.07e-01 100 chr12:131671211-13167131 2.40e-01 100 chr19:49728617-49728717 8.39e-01 100 chr2:69893716-69893816 7.88e-01 100 chr15:65304560-65304660 9.13e-01 100 chr19:50329477-50329577 8.27e-01 100 chr6:42217600-42217700 8.56e-01 100 chr6:31665335-31665435 9.65e-01 100 chr3:142883929-142884029 2.37e-01 100 chr11:134254388-13425448 4.09e-03 18_[+1(9.67e-05)]_39 chr6:110874556-110874656 8.15e-01 100 chr6:33271895-33271995 7.41e-01 100 chr1:224113881-224113981 8.50e-01 100 chr12:120292867-12029296 1.12e-01 100 chr6:26204604-26204704 9.45e-02 100 chr16:31179926-31180026 9.38e-01 100 chr10:17022793-17022893 5.61e-01 100 chr22:42615343-42615443 5.90e-01 100 chr17:10790828-10790928 8.71e-01 100 chr7:104983861-104983961 5.31e-01 100 chr19:51136851-51136951 7.10e-01 100 chr12:12267161-12267261 8.61e-01 100 chr2:30661140-30661240 7.23e-01 100 chr11:65051215-65051315 3.52e-09 51_[+3(2.89e-13)]_15 chr1:179882553-179882653 3.36e-01 100 chr1:78004200-78004300 4.47e-02 100 chr11:64484270-64484370 9.02e-01 100 chr12:120291482-12029158 8.02e-01 100 chr1:25430102-25430202 3.08e-02 100 chr11:73656930-73657030 8.78e-01 100 chr19:58387032-58387132 9.41e-01 100 chr20:35741937-35742037 4.13e-01 100 chr1:232868839-232868939 5.16e-01 100 chr15:65304773-65304873 2.46e-11 31_[-3(5.47e-15)]_35 chr6:27892863-27892963 6.17e-01 100 chr6:3118065-3118165 6.54e-01 100 chr1:27066158-27066258 1.71e-12 38_[+3(1.73e-15)]_28 chr6:41787484-41787584 7.58e-01 100 chr7:107010093-107010193 4.37e-01 100 chr21:25607235-25607335 5.74e-01 100 chr2:178076096-178076196 8.55e-02 100 chr2:101002082-101002182 6.86e-01 100 chr16:23678466-23678566 2.84e-01 100 chr1:212791610-212791710 4.03e-01 100 chr1:148522410-148522510 3.45e-18 51_[+1(4.27e-23)]_6 chr5:67003691-67003791 2.95e-01 100 chr5:91380130-91380230 6.82e-03 43_[+1(1.77e-06)]_14 chr2:68426372-68426472 2.18e-01 100 chr5:91381640-91381740 3.61e-01 100 chr1:44819659-44819759 4.06e-02 100 chr1:101167174-101167274 9.01e-01 100 chr2:61538030-61538130 7.96e-01 100 chr6:170552951-170553051 6.59e-01 100 chr6:14967116-14967216 8.31e-02 36_[+1(8.32e-05)]_21 chr16:8109513-8109613 3.63e-01 100 chr20:34303116-34303216 4.50e-01 100 chr9:133030767-133030867 3.11e-01 100 chr19:1438280-1438380 9.87e-01 100 chr6:27133185-27133285 4.20e-01 100 chr16:5187458-5187558 3.09e-01 100 chr1:144412413-144412513 1.67e-09 22_[+1(2.75e-13)]_35 chr17:58332205-58332305 2.46e-01 100 chr12:6890775-6890875 3.57e-01 100 chr11:130069670-13006977 3.58e-01 100 chr15:74760265-74760365 2.05e-01 100 chr4:73259016-73259116 2.01e-01 100 chr1:144546392-144546492 7.74e-01 100 chr7:155069870-155069970 7.20e-01 100 chr16:8991899-8991999 6.84e-10 11_[-3(1.83e-14)]_55 chr5:95729014-95729114 2.69e-01 100 chr8:116602420-116602520 4.38e-02 56_[+2(5.05e-05)]_13 chr3:9396084-9396184 5.93e-02 100 chr17:44288355-44288455 7.69e-01 100 chr14:56216923-56217023 5.49e-01 100 chr19:4769405-4769505 5.69e-01 100 chr17:39623498-39623598 7.18e-01 100 chr11:4161216-4161316 4.38e-01 100 chr17:17352215-17352315 6.59e-02 100 chr10:80749845-80749945 4.56e-01 100 chr16:9091412-9091512 9.39e-01 100 chr17:8173271-8173371 8.41e-01 100 chr4:184193760-184193860 5.53e-01 100 chr2:177179502-177179602 1.83e-01 100 chr8:108787091-108787191 4.17e-01 100 chr1:222617870-222617970 7.92e-01 100 chr3:25592370-25592470 9.32e-01 100 chr1:150579296-150579396 4.84e-01 100 chr3:32380086-32380186 1.69e-02 20_[-3(1.67e-05)]_46 chr7:40134393-40134493 6.69e-01 100 chr6:156652201-156652301 4.94e-01 100 chr20:36367844-36367944 3.40e-03 31_[-1(6.66e-05)]_26 chr17:43315752-43315852 5.44e-01 100 chr4:80232693-80232793 2.00e-01 100 chr17:44069871-44069971 5.45e-01 100 chr9:137241081-137241181 1.99e-01 100 chr2:151828615-151828715 1.94e-01 100 chr2:151933379-151933479 3.78e-01 100 chr2:65943394-65943494 5.34e-01 100 chr2:157251860-157251960 3.14e-01 100 chr5:173858268-173858368 7.33e-01 100 chr4:37561294-37561394 4.34e-01 100 chr5:56725598-56725698 5.15e-01 100 chr2:112275159-112275259 9.28e-01 100 chr1:52330106-52330206 3.35e-01 100 chr6:16265653-16265753 3.11e-02 100 chr20:58619795-58619895 8.51e-01 100 chr19:5434392-5434492 9.51e-01 100 chr8:144792104-144792204 7.65e-01 100 chr15:90648758-90648858 2.53e-01 100 chr12:56117865-56117965 9.50e-01 100 chr21:45073853-45073953 7.06e-01 100 chr15:58332127-58332227 6.96e-01 100 chr2:208265611-208265711 5.22e-01 100 chr3:69079260-69079360 7.83e-01 100 chr10:92829090-92829190 8.52e-01 100 chr1:149636608-149636708 2.05e-31 17_[+1(9.81e-24)]_4_[+2(5.00e-16)]_\ 5 chr6:163777270-163777370 7.97e-01 100 chr19:49487375-49487475 5.64e-01 100 chr20:59020924-59021024 2.51e-01 100 chr11:75399326-75399426 6.06e-01 100 chr11:65422617-65422717 9.14e-02 100 chr19:17405645-17405745 2.37e-01 100 chr1:148402570-148402670 1.17e-33 4_[+1(1.36e-24)]_4_[+2(1.67e-17)]_\ 18 chr7:23531717-23531817 1.32e-01 9_[+3(7.11e-05)]_57 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: indra ********************************************************************************