Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/TAF7-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Database contains 685 sequences, 342500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
ARATGGCG | 8 | AGATGGCG |
GCGGCGGM | 8 | GCGGCGGC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.237 C 0.263 G 0.263 T 0.237
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
ARATGGCG | DREME-1 | chr4 | - | 2008953 | 2008960 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr6 | + | 7723903 | 7723910 | 1.67e-05 | 0.275 | AGATGGCg |
ARATGGCG | DREME-1 | chr17 | + | 8162971 | 8162978 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr19 | - | 8321352 | 8321359 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 11273230 | 11273237 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr10 | - | 11894505 | 11894512 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr19 | + | 12945880 | 12945887 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr3 | + | 13650947 | 13650954 | 1.67e-05 | 0.275 | agatggcg |
ARATGGCG | DREME-1 | chr1 | - | 19878519 | 19878526 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr12 | - | 24934031 | 24934038 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 27830833 | 27830840 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr6 | + | 37257778 | 37257785 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr19 | + | 38374788 | 38374795 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr17 | - | 42017410 | 42017417 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr17 | - | 42017410 | 42017417 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr6 | - | 42217843 | 42217850 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr20 | + | 45934705 | 45934712 | 1.67e-05 | 0.275 | AGATggcg |
ARATGGCG | DREME-1 | chr20 | - | 45934932 | 45934939 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr21 | - | 46324446 | 46324453 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr11 | - | 47426225 | 47426232 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr19 | + | 49487627 | 49487634 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr20 | + | 50790613 | 50790620 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr10 | + | 72692149 | 72692156 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr4 | + | 73259476 | 73259483 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr11 | + | 73788025 | 73788032 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr11 | + | 73788050 | 73788057 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr11 | - | 76444658 | 76444665 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr15 | + | 92900343 | 92900350 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr7 | - | 100119339 | 100119346 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr10 | + | 103367987 | 103367994 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr12 | + | 109477648 | 109477655 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr7 | - | 130051360 | 130051367 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr9 | - | 134206425 | 134206432 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr9 | + | 137241480 | 137241487 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 153990979 | 153990986 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 153990979 | 153990986 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr7 | + | 156949735 | 156949742 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr5 | + | 179732843 | 179732850 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr5 | + | 181243985 | 181243992 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr3 | - | 197950199 | 197950206 | 1.67e-05 | 0.275 | AGATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 224114127 | 224114134 | 1.67e-05 | 0.275 | AGATggcg |
ARATGGCG | DREME-1 | chr19 | - | 2269515 | 2269522 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr16 | - | 5187653 | 5187660 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr7 | + | 23531977 | 23531984 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr16 | - | 31180387 | 31180394 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr6 | - | 31834902 | 31834909 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr6 | - | 31834902 | 31834909 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr6 | - | 31834902 | 31834909 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr20 | + | 35742214 | 35742221 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr3 | - | 41199495 | 41199502 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr12 | - | 54280966 | 54280973 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr11 | - | 62855654 | 62855661 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr11 | - | 65497811 | 65497818 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr17 | + | 76737375 | 76737382 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 93079298 | 93079305 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 93079298 | 93079305 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr11 | - | 93741598 | 93741605 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr7 | - | 99466135 | 99466142 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr2 | - | 112275595 | 112275602 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr6 | - | 149718056 | 149718063 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 179882606 | 179882613 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr5 | + | 181243953 | 181243960 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr1 | - | 212791757 | 212791764 | 3.18e-05 | 0.341 | AAATGGCG |
ARATGGCG | DREME-1 | chr4 | + | 2009030 | 2009037 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr16 | + | 2155305 | 2155312 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr19 | + | 3985219 | 3985226 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr17 | + | 8162875 | 8162882 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr22 | + | 17638764 | 17638771 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr1 | + | 31065702 | 31065709 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr7 | + | 35800886 | 35800893 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr17 | + | 42018108 | 42018115 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr12 | + | 53006481 | 53006488 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr17 | + | 64506115 | 64506122 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr17 | + | 76602395 | 76602402 | 6.36e-05 | 0.565 | acatggcg |
ARATGGCG | DREME-1 | chr2 | - | 112275627 | 112275634 | 6.36e-05 | 0.565 | ACATGGCG |
ARATGGCG | DREME-1 | chr5 | - | 181243994 | 181244001 | 6.36e-05 | 0.565 | ACATGGCG |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif ARATGGCG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/TAF7-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_4 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/TAF7-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.