Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/TAF7-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Database contains 685 sequences, 342500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | 43 | AGCCATTGTGCTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
GGGAAWCTYVACTGCATAAYTTGTGGYAGTG | 31 | GGGAAACTCGACTGCATAATTTGTGGTAGTG |
CTGGGATTACAGGCATGAGCCACCAYGCYYRGCY | 34 | CTGGGATTACAGGCATGAGCCACCACGCCCGGCC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.237 C 0.263 G 0.263 T 0.237
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 148402774 | 148402816 | 1.37e-24 | 7.51e-19 | agcaattttactctggatgtgctgacccctgtgatttccccaa |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 120850879 | 120850921 | 3.18e-24 | 7.51e-19 | ATCCATTGTGTTCCGGATGTGCTGACCTCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 145281176 | 145281218 | 4.74e-24 | 7.51e-19 | atccattgcgttccggatgtgctgacccctgcgatttccccaa |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 149636825 | 149636867 | 9.68e-24 | 7.51e-19 | agcaattttgctgtggatgtgctgacccctgtgatttccccga |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1_KI270713v1_random | - | 21921 | 21963 | 1.32e-23 | 7.51e-19 | ATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1_KI270713v1_random | - | 21921 | 21963 | 1.32e-23 | 7.51e-19 | ATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 16514182 | 16514224 | 1.32e-23 | 7.51e-19 | ATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 145465677 | 145465719 | 1.32e-23 | 7.51e-19 | ATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 148038813 | 148038855 | 1.32e-23 | 7.51e-19 | ATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 16896039 | 16896081 | 1.32e-23 | 7.51e-19 | atccattgcactccggatgtgctgacccctgcgatttccccaa |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 146376866 | 146376908 | 1.32e-23 | 7.51e-19 | atccattgcactccggatgtgctgacccctgcgatttccccaa |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 148522661 | 148522703 | 4.44e-23 | 2.32e-18 | atccattgcgttccagatgtgctgacctctgcgatttccccaa |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 120942659 | 120942701 | 6.32e-23 | 3.05e-18 | agcagttttactgtggatgtgctgacccctgtgatttccccga |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 144551839 | 144551881 | 5.61e-22 | 2.51e-17 | ATTCATTGTACTCCGGATGTGCTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 148388548 | 148388590 | 5.14e-21 | 2.15e-16 | ATCCATTGCACTCCAGATGTGTTGACCCCTGCGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 146052141 | 146052183 | 3.48e-18 | 1.36e-13 | ATCCATTGCACTCCGGATCTGCTGACCCCTGCAGTTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 144412635 | 144412677 | 2.72e-13 | 1e-08 | atccgttatgttccgggtgtactgacccctgccattttccccc |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr17 | - | 58679586 | 58679628 | 3.48e-12 | 1.21e-07 | GTCTCTTGCATTGTGGATGTGCTGACCCCTGTGGTTTTCTACA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 143720539 | 143720581 | 7.94e-10 | 2.62e-05 | ATCCATTGCACTCCAGATGTGCTGTTCTCTTGTTGTTTCCCCT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 148334667 | 148334709 | 2.66e-08 | 0.000833 | TTCCATTGCACTGTGGACGTGCTGATCCTGCGATTAACCCAAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr17 | - | 58666597 | 58666639 | 1.73e-07 | 0.00516 | GCTTATTCGTTGCACTTTGTGCTGATCCCTACGATTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 148263526 | 148263568 | 2.71e-07 | 0.00772 | aggttttttctattgtgtgtactgattcttgcgattttcctaa |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr17 | - | 58659208 | 58659250 | 1.52e-06 | 0.0416 | GGGGAGGGTTTTTACTATGTGTTTGCTCCCGCGATTTCCCCGA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr5 | + | 91380373 | 91380415 | 1.69e-06 | 0.0425 | TTCCATCTGGCTCGGGCCACTCTGACACCTTTAGTTTCGGCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr5 | + | 91380373 | 91380415 | 1.69e-06 | 0.0425 | TTCCATCTGGCTCGGGCCACTCTGACACCTTTAGTTTCGGCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chrX | + | 41332643 | 41332685 | 1.98e-06 | 0.0478 | AGACCTTTTGTGGGGGTGGTGGAAACCACTGCGTTTTATTTAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr11 | + | 12764815 | 12764857 | 7.34e-06 | 0.17 | aggaatgggggcctggtgctcccgaatcccttgattgccccca |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr22 | + | 32423971 | 32424013 | 8.06e-06 | 0.173 | TGTCATGTCTCTTGGGATCAGTTTCTCCCTGTTATTTGGTCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 120355044 | 120355086 | 8.29e-06 | 0.173 | ttccattgtactcagtatgtgctgactgactcctgttacttcc |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 146409960 | 146410002 | 8.29e-06 | 0.173 | ctccattgtactcagtatgtgctgactgactcctgttacttcc |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 170073423 | 170073465 | 8.94e-06 | 0.181 | AATATTTTTATTCTGGCTTGGCTGAGCTCTCATCATCACAGAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr9 | - | 127424148 | 127424190 | 9.41e-06 | 0.184 | ATCCATCGTGCTTTTTTGTTGCACACGTCTTTAAAGTCCACCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr5 | - | 174188355 | 174188397 | 1.03e-05 | 0.195 | ATGAAATTGACTTTAAAGATGATGACCACTGGTTTTTTCAAAT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | - | 68332112 | 68332154 | 1.06e-05 | 0.195 | AGTCGTTTGCCTCGTGTAGCGCTCGCCACAACGGTTCTCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 146387502 | 146387544 | 1.47e-05 | 0.263 | aactatttcatttcaagtgtgctgttctgtcattttctccaag |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | + | 23055917 | 23055959 | 1.57e-05 | 0.273 | ATCAATTACTGCCTAGATGGAATTTACCCTTTGTGTTCACAGC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | - | 39406555 | 39406597 | 2.17e-05 | 0.368 | GGCGGGCTTGCGCCGCAGGAGCGGGCCTCTGGGCTGTAGCCGG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr2 | - | 46332406 | 46332448 | 2.58e-05 | 0.426 | TGGCGAATCTCTGCTACTGAGGTCCCGTCAGTGATTTCTGCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | + | 92829423 | 92829465 | 3.01e-05 | 0.479 | cttaacctcactccatacgtgtccatgtccttgatttccttgg |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 245562041 | 245562083 | 3.06e-05 | 0.479 | ATCAGTGCTGAGTCTGATCTGCACACACTGAAGATGCCCCCCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | - | 65608211 | 65608253 | 3.2e-05 | 0.489 | AGCCAGGTTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | + | 152205434 | 152205476 | 3.32e-05 | 0.496 | CTGAACCTAGAAGAGAAAATTCTGACCCCTCCTCCTTCCCCAT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr17 | + | 12439256 | 12439298 | 3.82e-05 | 0.55 | TCCCATTGGTCTGTCGGCCTGCTGATCTCCTCAGTTACGCCCT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr9 | + | 109440859 | 109440901 | 3.89e-05 | 0.55 | ATCctaagcggccactctgtgcaaagctctgtgctaaccacta |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | - | 146886893 | 146886935 | 3.95e-05 | 0.55 | GGCATTTTCCTGTAGGCTGTGCAGATTTGCATGGTTCCACTAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr2 | - | 38751164 | 38751206 | 4.06e-05 | 0.553 | AGGGACGTTGGTGTGGGTGTAGTGAGCACTGCGAGGCCGTAGG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr14 | + | 20343084 | 20343126 | 4.33e-05 | 0.553 | AGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCTCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr11 | + | 47426001 | 47426043 | 4.36e-05 | 0.553 | ATCCCTCGTTCTCCGAACCCACTCACAGCCTCAGTTTCCACGC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | + | 43759718 | 43759760 | 4.41e-05 | 0.553 | AGCACCCTTACTCCTCATGATCTCTGTCCTGTTACCCTCCCCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | + | 112641269 | 112641311 | 4.44e-05 | 0.553 | TTACACTGTACTTTGGAAGGAGAAAATTCTCAGATTTCTGCAT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | + | 31835285 | 31835327 | 4.99e-05 | 0.553 | CTTGAGTGTGTCGCTGATGCCATCACCGCAGCGCTCTGACCGC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | + | 92829506 | 92829548 | 5.16e-05 | 0.553 | caccacttcaCTACCTTCTGGGGCACCCCTGCCTTGTCCCCAG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr20 | + | 2470679 | 2470721 | 5.26e-05 | 0.553 | CTCCTTACCATGGTGGCGGTTCTGATGGCTCTGATACCCGCCG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | - | 170699932 | 170699974 | 5.37e-05 | 0.553 | GGTAATTGAATCATGAGTGTGGTTTCCCCCATGCTATTCTCGT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 16896014 | 16896056 | 5.46e-05 | 0.553 | ATCCGGAGTGCAATGGATAAGCCTCGCCCTGGGAAAACCACCT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 146376841 | 146376883 | 5.46e-05 | 0.553 | ATCCGGAGTGCAATGGATAAGCCTCGCCCTGGGAAAACCACCT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1_KI270713v1_random | + | 21946 | 21988 | 5.46e-05 | 0.553 | atccggagtgcaatggataagcctcgccctgggaaaaccacct |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1_KI270713v1_random | + | 21946 | 21988 | 5.46e-05 | 0.553 | atccggagtgcaatggataagcctcgccctgggaaaaccacct |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 16514207 | 16514249 | 5.46e-05 | 0.553 | atccggagtgcaatggataagcctcgccctgggaaaaccacct |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 35580969 | 35581011 | 5.46e-05 | 0.553 | atccattttgaggcatttctgccatccccagaagttcccattt |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr9 | + | 124861817 | 124861859 | 5.46e-05 | 0.553 | GGCAGATAGAATCCGCGGGCTCAGCCCGCACCGCCTTCCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 148038838 | 148038880 | 5.46e-05 | 0.553 | atccggagtgcaatggataagcctcgccctgggaaaaccacct |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 144546439 | 144546481 | 5.77e-05 | 0.565 | AACTATTTCATTTCAAGTGTGCTGTTCTGTCATTTTCTCTAAC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 144546439 | 144546481 | 5.77e-05 | 0.565 | AACTATTTCATTTCAAGTGTGCTGTTCTGTCATTTTCTCTAAC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr15 | + | 30999927 | 30999969 | 6.04e-05 | 0.583 | ATCTTCTGCAGACCAGCTCTGCTGAGGTGTTATAGATTCCCCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr5 | + | 139274109 | 139274151 | 6.19e-05 | 0.588 | CTCCGGCCTCTGCCGGTGCTGCTGCGCCCTGCGGAGCTCCGAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | - | 26103903 | 26103945 | 6.35e-05 | 0.591 | ATTCCTATCGCAGTGGAAGGTATGAACTGAAACAGTTCCTTAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr2 | - | 88016456 | 88016498 | 6.45e-05 | 0.591 | ATCAGTTTAATATCTGGTATGTTCTTCTGTTTGATGAACGCTA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr7 | - | 100119109 | 100119151 | 6.5e-05 | 0.591 | AGAGATGTTGCAGGAGATGGGGTGGGCTCTCTGAACCTCCTTT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr20 | - | 36368075 | 36368117 | 6.69e-05 | 0.591 | ACCCACTGTATGCCAGGCACGGGGCCAGCTGCTAGTTGGCCAG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | - | 73742206 | 73742248 | 6.69e-05 | 0.591 | GGCTAATTTTTTGTAGAGGTGAGGTCTCCCTGTGTTGCCCAGG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | - | 5446597 | 5446639 | 7.26e-05 | 0.623 | ATGCCTCTCGCCGCGGTGGAGCAGAGGCTTCTGAGAGCCGCAG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 167554616 | 167554658 | 7.36e-05 | 0.623 | AGGCCCTTGCTTGCACATGTTGACAACTCTCTTTTTGCCCAAT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 46340841 | 46340883 | 7.57e-05 | 0.623 | CTGAGGGGTGTCCGGGAGCTGCTGAAGCGTGTGGACCTCGCGA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr16 | - | 24537748 | 24537790 | 7.8e-05 | 0.623 | ATGGAATTCACTCCGAAGCGGTGAATCTGTTCCTTTTGCCCGT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr22 | + | 37657763 | 37657805 | 8.03e-05 | 0.623 | ACCAGTGGCTCCTCAAAGGTCCCAAGACCTGTGGTTGCTTCCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr2 | + | 61538473 | 61538515 | 8.1e-05 | 0.623 | CGCCGCTTCGGCCCCTACCTCTTTTCAGCAGCGATTTGCCCGC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | + | 101818446 | 101818488 | 8.1e-05 | 0.623 | TGCGCTTGCGCTGCAGACCGGCTCAGACCGGTCCCCTCCGCCC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | + | 159789552 | 159789594 | 8.11e-05 | 0.623 | AGTGGCTGCGACGGCGTGGAGCGTACCCGAGCGATGTCCCAGG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | - | 26216328 | 26216370 | 8.19e-05 | 0.623 | CTCCAGGGAGATCCAGACCGCCGTGCGTCTGCTGCTTCCCGGA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | + | 14967352 | 14967394 | 8.19e-05 | 0.623 | ctctgttgcagtctggatctggacgcctttcTggtaacaatag |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr5 | + | 67003980 | 67004022 | 8.23e-05 | 0.623 | ACCAGCGGCGTCCTGGCGGAGGAGTCACTGTGGACTTCCCCGG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr14 | + | 20343102 | 20343144 | 8.29e-05 | 0.623 | ATGAGGTCCCCTGCGGGGTACCTCACCTCAGCCATTGAACTCA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | - | 32380246 | 32380288 | 8.37e-05 | 0.623 | ATCCTTGTTGTTGCAAATGACAGGATTTCCTTCTTTTTTTTAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | - | 28720617 | 28720659 | 8.44e-05 | 0.623 | CTCCATTGCACTCCAGCCTGGGTAACAAGAGCGAAACTCCGTA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | + | 31835093 | 31835135 | 8.9e-05 | 0.63 | TACCGTTGCACACTGGAGTTTCTGGTGTCTTTGCTTGGAACTG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr6 | + | 31835093 | 31835135 | 8.9e-05 | 0.63 | TACCGTTGCACACTGGAGTTTCTGGTGTCTTTGCTTGGAACTG |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr3 | + | 193942669 | 193942711 | 8.9e-05 | 0.63 | TTTGAgctgaccgcagctctgctgctttcaacgtttgccccag |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 245561778 | 245561820 | 8.95e-05 | 0.63 | TACGATAGTTGTTAAGATGTGCACAGACGTAGGATTGACCCAC |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr10 | - | 16892089 | 16892131 | 9.34e-05 | 0.646 | ATCAGTGCTATTTCACATCTCTTGCTATGGACTGATTTCCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 9009757 | 9009799 | 9.51e-05 | 0.646 | TCCTTCTACCTCTCGAATGGGGTGACTTCTGGTCTTTCCTTAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 25232060 | 25232102 | 9.63e-05 | 0.646 | GTGAGTAGTCTTGGAGGCCGGCTTAGATCCGTCATCTGGCCAA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr12 | + | 131671512 | 131671554 | 9.68e-05 | 0.646 | aaaagatgcacacaagatgattccactcatgtgagattcctag |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr22 | - | 42661963 | 42662005 | 9.73e-05 | 0.646 | ATCTATTCTGCATTGGTTGGACAGAACCAGTTTTCTTCATCTA |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | - | 148388477 | 148388519 | 9.79e-05 | 0.646 | GGTAGTGGTACTGCGTTCGCGCTTTCCCCTGATTTTTTGTAGT |
AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA | MEME-1 | chr1 | + | 148263445 | 148263487 | 9.94e-05 | 0.65 | AGCTGTGGCGGGGCGGAGGTGTGCAAATCCGtagttacctggg |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_2 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif AKCMATTKYRYTSYGGATGTGCTGACCYCTGYGATTTCCCCRA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/TAF7-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_2 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/TAF7-Antibody.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.