# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 685 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:44 PST 2017)
#   negatives: 685 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/TAF7-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:45 PST 2017)
#        host: indra
#        when: Wed Nov 22 13:00:36 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.230 C 0.268 G 0.273 T 0.228


MOTIF ARATGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARATGGCG   CGCCATYT         34          1   7.1e-010   2.4e-005
#         AGATGGCG   CGCCATCT         26          1   1.7e-007   5.8e-003
#         AAATGGCG   CGCCATTT          8          0   3.8e-003   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.4e-005
1.000000 0.000000 0.000000 0.000000
0.235294 0.000000 0.764706 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCGGCGGM DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGGCGGM   KCCGCCGC         38          6   3.2e-007   1.1e-002
#         GCGGCGGC   GCCGCCGC         32          6   9.5e-006   3.3e-001
#         GCGGCGGA   TCCGCCGC          7          0   7.7e-003   2.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.1e-002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.162791 0.837209 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 13.65 seconds