******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/NR2C1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr14:73852496-73852596 1.0000 100 chrX:65926165-65926265 1.0000 100 chr1:92544689-92544789 1.0000 100 chr17:15648337-15648437 1.0000 100 chr17:55814436-55814536 1.0000 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chr5:39167198-39167298 1.0000 100 chr5:7903159-7903259 1.0000 100 chr6:39999022-39999122 1.0000 100 chr3:57597521-57597621 1.0000 100 chr5:135329600-135329700 1.0000 100 chr17:76726352-76726452 1.0000 100 chr1:234558465-234558565 1.0000 100 chr19:55544898-55544998 1.0000 100 chr19:1507775-1507875 1.0000 100 chr3:171013731-171013831 1.0000 100 chr11:3057433-3057533 1.0000 100 chr20:31968297-31968397 1.0000 100 chr1:160046469-160046569 1.0000 100 chr17:47324150-47324250 1.0000 100 chr3:58036588-58036688 1.0000 100 chr1:21634318-21634418 1.0000 100 chr17:58631411-58631511 1.0000 100 chr6:106312753-106312853 1.0000 100 chr15:96066993-96067093 1.0000 100 chr5:78676516-78676616 1.0000 100 chr17:39754481-39754581 1.0000 100 chr19:9917156-9917256 1.0000 100 chr7:44157314-44157414 1.0000 100 chr1:8542150-8542250 1.0000 100 chr8:129999771-129999871 1.0000 100 chr6:146857404-146857504 1.0000 100 chr1:43604213-43604313 1.0000 100 chr11:47376633-47376733 1.0000 100 chr6:106325547-106325647 1.0000 100 chr15:74777959-74778059 1.0000 100 chr16:25257471-25257571 1.0000 100 chrX:13036350-13036450 1.0000 100 chr20:44531920-44532020 1.0000 100 chr5:139661080-139661180 1.0000 100 chr16:67268231-67268331 1.0000 100 chr7:107579843-107579943 1.0000 100 chr4:109750573-109750673 1.0000 100 chr19:48403451-48403551 1.0000 100 chr1:109307414-109307514 1.0000 100 chr1:61441716-61441816 1.0000 100 chr15:43541829-43541929 1.0000 100 chr11:18588642-18588742 1.0000 100 chr19:48900995-48901095 1.0000 100 chr6:158366385-158366485 1.0000 100 chr21:46455647-46455747 1.0000 100 chr6:118809159-118809259 1.0000 100 chr1:213050970-213051070 1.0000 100 chr15:65225289-65225389 1.0000 100 chr7:112537721-112537821 1.0000 100 chr4:2963277-2963377 1.0000 100 chr7:100158518-100158618 1.0000 100 chr17:64329424-64329524 1.0000 100 chr2:138058325-138058425 1.0000 100 chr2:30252980-30253080 1.0000 100 chr2:3377363-3377463 1.0000 100 chr17:62173549-62173649 1.0000 100 chr4:6673498-6673598 1.0000 100 chr7:38908971-38909071 1.0000 100 chr2:215618036-215618136 1.0000 100 chr3:37892867-37892967 1.0000 100 chr19:51807405-51807505 1.0000 100 chr3:13431267-13431367 1.0000 100 chr9:94374062-94374162 1.0000 100 chr1:170532026-170532126 1.0000 100 chr7:87057210-87057310 1.0000 100 chr18:22529507-22529607 1.0000 100 chr5:180885802-180885902 1.0000 100 chr1:15834303-15834403 1.0000 100 chr6:109229714-109229814 1.0000 100 chr6:2841621-2841721 1.0000 100 chr1:91717762-91717862 1.0000 100 chr1:2556757-2556857 1.0000 100 chr19:35628833-35628933 1.0000 100 chr8:19067603-19067703 1.0000 100 chr2:86105996-86106096 1.0000 100 chr5:151251053-151251153 1.0000 100 chr3:187041589-187041689 1.0000 100 chr2:216681603-216681703 1.0000 100 chr3:141652255-141652355 1.0000 100 chr12:108629786-10862988 1.0000 100 chr16:24002604-24002704 1.0000 100 chr1:39738677-39738777 1.0000 100 chr10:30349153-30349253 1.0000 100 chr7:105106207-105106307 1.0000 100 chr1:21634060-21634160 1.0000 100 chr1:28351354-28351454 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/NR2C1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/NR2C1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/NR2C1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.242 C 0.258 G 0.258 T 0.242 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/NR2C1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.247 C 0.253 G 0.253 T 0.247 ******************************************************************************** ******************************************************************************** MOTIF YCAASATGGAGTHRCTCTGGYT MEME-1 width = 22 sites = 47 llr = 775 E-value = 1.7e-108 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a91a::161336:::22:1: pos.-specific C 58::3::::1::419372::42 probability G 1::16::a9:9::31::17711 matrix T 42::::a::3:72::7351357 bits 2.0 * 1.8 * *** 1.6 ** **** * 1.4 ** **** * Relative 1.2 *** **** * * Entropy 1.0 *** **** * * * * (23.8 bits) 0.8 *** **** ** *** ** * 0.6 *********** **** ** * 0.4 ************ **** **** 0.2 ********************** 0.0 ---------------------- Multilevel CCAAGATGGAGTCACTCTGGTT consensus T C T AAG CTA TC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrX:40571460-40571560 + 54 1.68e-13 ccagccccat tcaagatggagtcactctggtt caaatgcctc chrX:110001052-110001152 + 44 1.35e-12 caggccctgt tcaagatggagtcgctctggtt ctaacgcctc chr5:7903159-7903259 + 42 7.52e-12 cttgccccat tcaagatggagtcactctagtt caaacgcctg chr1:67399521-67399621 - 53 3.17e-11 CAGCCTCTAT TCAAGATGGAGTTGCTTTGGTT CAAACACCTC chr2:11900261-11900361 - 70 3.80e-11 AGCCCCTAC TCAAGATGGAGTCGCTCTTGTT CAAATCCCTC chr4:147708625-147708725 - 26 1.06e-10 CAGCCCCTAT TCAAGATGGAGGCACTCTGGTT CAAATGCCTC chr21:29387525-29387625 + 63 1.23e-10 cagcccctat ttaagatggagttgctctggtt cacatgcctc chr11:20200295-20200395 - 19 1.23e-10 CAGCTCCTAC TTAAGATGGAGTTGCTCTGGTT CACACACCTC chr8:29359581-29359681 - 25 1.23e-10 CAGCTCCGAG TTAAGATGGAGTTGCTCTGGTT CACATGCCTC chr12:15853853-15853953 + 59 2.64e-10 tagcccctat tcaagatggagtagctctggtg agagtgcctc chr1:52738964-52739064 - 8 3.51e-10 ACCCACATGG CCAACATGGTGAAACTCTGTCT CTACTAA chr12:126903343-12690344 + 44 4.02e-10 cagttcctgt ttaagatggagttgctcaggtt caaatgtctt chr2:105467633-105467733 - 8 5.28e-10 CAGCTTCTAT TCAAGGTGGAGTCACTCTGGTT CAAATGC chr12:91836667-91836767 - 29 5.28e-10 CCGAACAAAA CCAAAATGGAGTCACTCATGCT AAATGCAACA chr19:44309287-44309387 + 15 8.90e-10 ggggtgagaa ccaagatggagtcacttatgtc agatttctcc chr6:27047664-27047764 + 72 8.90e-10 agtgaaagag ccaagatggagtgagtctggct ctcttag chr12:75683858-75683958 - 36 1.29e-09 CAGCTCCTAT TCCAGATGGAGTTGCTCTGGTT CACATGCCTC chr12:131625108-13162520 - 58 1.45e-09 AGTGAAAGAG CCAAGATGGAGTCTGTCTGGCT CTCTTAGCCA chr11:118708187-11870828 - 40 2.33e-09 CCGTGCTTGT CCAAGATGGCGATGCTTTGGCT CTGTCACCCA chr3:13431267-13431367 - 14 3.64e-09 ACCAGCCTGG CCAACATGGTGAAACCCCGTCT CTACTAAAAA chr6:163421726-163421826 - 4 3.64e-09 ATCAGCCTGG CCAACATGGTGAAACCCCGTCT CTA chr5:10487574-10487674 + 76 3.64e-09 accagcctgg ccaacatggtgaaaccccgtct cta chr3:40351710-40351810 - 9 5.03e-09 CAGACCCTAT TCAACATGGAGTCCCTCTGGTA CAAACATC chr3:112769599-112769699 - 73 6.87e-09 TTAGAA GCAAGATGGAGTCAGTTAAGTT AGATCTCTTT chr15:75140518-75140618 - 29 7.59e-09 AAGGTTAGAA GCAAGATGGAGTCAGTTAGGTC TGATCTCTTT chr3:195715903-195716003 + 55 1.13e-08 accaacttgg ccaacatggtgaaaccctgttg actcaggatg chr2:215618036-215618136 + 54 1.51e-08 cagcccctgt tcaagatggaagtgctctggtt cacacgcctc chr3:58036588-58036688 + 60 1.51e-08 aaggttagaa gcaagatggagtcggttaggtc tgacctcttt chr14:94109565-94109665 - 4 1.51e-08 GTTGTAAGAT TCAAAATGGAGTCACTTGGGTA AAA chr9:96683464-96683564 - 21 1.65e-08 GTTGTCAAAT TCAAAATGGAGTCACTTGTGTC AAACTCTAGT chr19:52692385-52692485 - 23 1.65e-08 ATGGAGAAGC CCAACATGGTGAAACCCAGTAT CTACTAAAAA chr17:62173549-62173649 + 6 2.18e-08 cctgg ccaacatggcgaaaccctgtat ctactaaaag chr4:109750573-109750673 - 38 3.39e-08 AGATTAGTAT CCAAGATGAAGTTGCTTTAGCC TCCATACAAC chr17:1213349-1213449 - 29 4.38e-08 ACCAGCCTGA CCAACATGGTGAAACCCCGCCT CTACTTAAAA chr10:46524329-46524429 + 31 6.09e-08 gaggttagaa gcaagatggagtccgttaggtc ggatctcttt chr17:59844222-59844322 + 60 6.61e-08 accagcctgg ccagcatggtgaaaccctatct ctactaaaaa chr9:129479939-129480039 - 2 1.14e-07 ACTAGTCTGG CCAACATGGCAAAACCCCGTCT C chr4:67702160-67702260 - 55 1.65e-07 TCAGATCAAA CCAGAATGGAGTTGCTTGTGCT AAGCACCATG chr1:108863101-108863201 - 52 1.77e-07 CCAGACCAAA CTAGAATGGAGTCACTTGTGCT AGGGGCCACA chr5:69046763-69046863 + 26 1.90e-07 accagcctga ccaagatggtgaaatcccatct ttactaaaaa chr6:37844200-37844300 - 68 3.52e-07 ACCATCCTGG CTAACATGGTGAAACCCCATCG CTACTAAGAA chr1:28351354-28351454 - 75 5.18e-07 CTAG CTAACAAGGTGTAACCCCATCT CTACTAAAAA chr6:3054647-3054747 - 8 5.87e-07 TTAGTACAGC ACAAAATGGAGTCTCCTATGTC TACTTCT chr17:42319606-42319706 + 45 6.24e-07 CGTCACCACA CTCACATGGAGTCCCTCAGGGC ACACTCCTCT chr12:116421891-11642199 - 29 6.24e-07 AAGTATTATC TCAAGATGAGATCACCCTGGAT TGACTGAGTG chr2:231706943-231707043 - 53 2.78e-06 TGTGCCACAC ACAAGATGGCGAGACGTAGGGT TCGTCCCTGT chr17:50304641-50304741 - 44 4.09e-06 AACAGTGCAT GTAAGATGATGTAACATTATGT AACATCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:40571460-40571560 1.7e-13 53_[+1]_25 chrX:110001052-110001152 1.3e-12 43_[+1]_35 chr5:7903159-7903259 7.5e-12 41_[+1]_37 chr1:67399521-67399621 3.2e-11 52_[-1]_26 chr2:11900261-11900361 3.8e-11 69_[-1]_9 chr4:147708625-147708725 1.1e-10 25_[-1]_53 chr21:29387525-29387625 1.2e-10 62_[+1]_16 chr11:20200295-20200395 1.2e-10 18_[-1]_60 chr8:29359581-29359681 1.2e-10 24_[-1]_54 chr12:15853853-15853953 2.6e-10 58_[+1]_20 chr1:52738964-52739064 3.5e-10 7_[-1]_71 chr12:126903343-12690344 4e-10 43_[+1]_35 chr2:105467633-105467733 5.3e-10 7_[-1]_71 chr12:91836667-91836767 5.3e-10 28_[-1]_50 chr19:44309287-44309387 8.9e-10 14_[+1]_64 chr6:27047664-27047764 8.9e-10 71_[+1]_7 chr12:75683858-75683958 1.3e-09 35_[-1]_43 chr12:131625108-13162520 1.5e-09 57_[-1]_21 chr11:118708187-11870828 2.3e-09 39_[-1]_39 chr3:13431267-13431367 3.6e-09 13_[-1]_65 chr6:163421726-163421826 3.6e-09 3_[-1]_75 chr5:10487574-10487674 3.6e-09 75_[+1]_3 chr3:40351710-40351810 5e-09 8_[-1]_70 chr3:112769599-112769699 6.9e-09 72_[-1]_6 chr15:75140518-75140618 7.6e-09 28_[-1]_50 chr3:195715903-195716003 1.1e-08 54_[+1]_24 chr2:215618036-215618136 1.5e-08 53_[+1]_25 chr3:58036588-58036688 1.5e-08 59_[+1]_19 chr14:94109565-94109665 1.5e-08 3_[-1]_75 chr9:96683464-96683564 1.7e-08 20_[-1]_58 chr19:52692385-52692485 1.7e-08 22_[-1]_56 chr17:62173549-62173649 2.2e-08 5_[+1]_73 chr4:109750573-109750673 3.4e-08 37_[-1]_41 chr17:1213349-1213449 4.4e-08 28_[-1]_50 chr10:46524329-46524429 6.1e-08 30_[+1]_48 chr17:59844222-59844322 6.6e-08 59_[+1]_19 chr9:129479939-129480039 1.1e-07 1_[-1]_77 chr4:67702160-67702260 1.6e-07 54_[-1]_24 chr1:108863101-108863201 1.8e-07 51_[-1]_27 chr5:69046763-69046863 1.9e-07 25_[+1]_53 chr6:37844200-37844300 3.5e-07 67_[-1]_11 chr1:28351354-28351454 5.2e-07 74_[-1]_4 chr6:3054647-3054747 5.9e-07 7_[-1]_71 chr17:42319606-42319706 6.2e-07 44_[+1]_34 chr12:116421891-11642199 6.2e-07 28_[-1]_50 chr2:231706943-231707043 2.8e-06 52_[-1]_26 chr17:50304641-50304741 4.1e-06 43_[-1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCAASATGGAGTHRCTCTGGYT width=22 seqs=47 chrX:40571460-40571560 ( 54) TCAAGATGGAGTCACTCTGGTT 1 chrX:110001052-110001152 ( 44) TCAAGATGGAGTCGCTCTGGTT 1 chr5:7903159-7903259 ( 42) TCAAGATGGAGTCACTCTAGTT 1 chr1:67399521-67399621 ( 53) TCAAGATGGAGTTGCTTTGGTT 1 chr2:11900261-11900361 ( 70) TCAAGATGGAGTCGCTCTTGTT 1 chr4:147708625-147708725 ( 26) TCAAGATGGAGGCACTCTGGTT 1 chr21:29387525-29387625 ( 63) TTAAGATGGAGTTGCTCTGGTT 1 chr11:20200295-20200395 ( 19) TTAAGATGGAGTTGCTCTGGTT 1 chr8:29359581-29359681 ( 25) TTAAGATGGAGTTGCTCTGGTT 1 chr12:15853853-15853953 ( 59) TCAAGATGGAGTAGCTCTGGTG 1 chr1:52738964-52739064 ( 8) CCAACATGGTGAAACTCTGTCT 1 chr12:126903343-12690344 ( 44) TTAAGATGGAGTTGCTCAGGTT 1 chr2:105467633-105467733 ( 8) TCAAGGTGGAGTCACTCTGGTT 1 chr12:91836667-91836767 ( 29) CCAAAATGGAGTCACTCATGCT 1 chr19:44309287-44309387 ( 15) CCAAGATGGAGTCACTTATGTC 1 chr6:27047664-27047764 ( 72) CCAAGATGGAGTGAGTCTGGCT 1 chr12:75683858-75683958 ( 36) TCCAGATGGAGTTGCTCTGGTT 1 chr12:131625108-13162520 ( 58) CCAAGATGGAGTCTGTCTGGCT 1 chr11:118708187-11870828 ( 40) CCAAGATGGCGATGCTTTGGCT 1 chr3:13431267-13431367 ( 14) CCAACATGGTGAAACCCCGTCT 1 chr6:163421726-163421826 ( 4) CCAACATGGTGAAACCCCGTCT 1 chr5:10487574-10487674 ( 76) CCAACATGGTGAAACCCCGTCT 1 chr3:40351710-40351810 ( 9) TCAACATGGAGTCCCTCTGGTA 1 chr3:112769599-112769699 ( 73) GCAAGATGGAGTCAGTTAAGTT 1 chr15:75140518-75140618 ( 29) GCAAGATGGAGTCAGTTAGGTC 1 chr3:195715903-195716003 ( 55) CCAACATGGTGAAACCCTGTTG 1 chr2:215618036-215618136 ( 54) TCAAGATGGAAGTGCTCTGGTT 1 chr3:58036588-58036688 ( 60) GCAAGATGGAGTCGGTTAGGTC 1 chr14:94109565-94109665 ( 4) TCAAAATGGAGTCACTTGGGTA 1 chr9:96683464-96683564 ( 21) TCAAAATGGAGTCACTTGTGTC 1 chr19:52692385-52692485 ( 23) CCAACATGGTGAAACCCAGTAT 1 chr17:62173549-62173649 ( 6) CCAACATGGCGAAACCCTGTAT 1 chr4:109750573-109750673 ( 38) CCAAGATGAAGTTGCTTTAGCC 1 chr17:1213349-1213449 ( 29) CCAACATGGTGAAACCCCGCCT 1 chr10:46524329-46524429 ( 31) GCAAGATGGAGTCCGTTAGGTC 1 chr17:59844222-59844322 ( 60) CCAGCATGGTGAAACCCTATCT 1 chr9:129479939-129480039 ( 2) CCAACATGGCAAAACCCCGTCT 1 chr4:67702160-67702260 ( 55) CCAGAATGGAGTTGCTTGTGCT 1 chr1:108863101-108863201 ( 52) CTAGAATGGAGTCACTTGTGCT 1 chr5:69046763-69046863 ( 26) CCAAGATGGTGAAATCCCATCT 1 chr6:37844200-37844300 ( 68) CTAACATGGTGAAACCCCATCG 1 chr1:28351354-28351454 ( 75) CTAACAAGGTGTAACCCCATCT 1 chr6:3054647-3054747 ( 8) ACAAAATGGAGTCTCCTATGTC 1 chr17:42319606-42319706 ( 45) CTCACATGGAGTCCCTCAGGGC 1 chr12:116421891-11642199 ( 29) TCAAGATGAGATCACCCTGGAT 1 chr2:231706943-231707043 ( 53) ACAAGATGGCGAGACGTAGGGT 1 chr17:50304641-50304741 ( 44) GTAAGATGATGTAACATTATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 8.72442 E= 1.7e-108 -253 89 -125 63 -1220 167 -1220 -37 196 -257 -1220 -1220 192 -1220 -199 -1220 -95 23 118 -1220 199 -1220 -357 -1220 -353 -1220 -1220 199 -1220 -1220 198 -1220 -195 -1220 189 -1220 137 -157 -357 5 -195 -1220 189 -1220 27 -1220 -257 142 37 75 -257 -21 127 -199 23 -253 -1220 175 -99 -353 -353 23 -357 142 -1220 143 -1220 37 -8 -57 -157 105 -54 -1220 143 -73 -1220 -357 147 16 -195 51 -199 105 -253 -57 -199 155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 47 E= 1.7e-108 0.042553 0.468085 0.106383 0.382979 0.000000 0.808511 0.000000 0.191489 0.957447 0.042553 0.000000 0.000000 0.936170 0.000000 0.063830 0.000000 0.127660 0.297872 0.574468 0.000000 0.978723 0.000000 0.021277 0.000000 0.021277 0.000000 0.000000 0.978723 0.000000 0.000000 1.000000 0.000000 0.063830 0.000000 0.936170 0.000000 0.638298 0.085106 0.021277 0.255319 0.063830 0.000000 0.936170 0.000000 0.297872 0.000000 0.042553 0.659574 0.319149 0.425532 0.042553 0.212766 0.595745 0.063830 0.297872 0.042553 0.000000 0.851064 0.127660 0.021277 0.021277 0.297872 0.021277 0.659574 0.000000 0.680851 0.000000 0.319149 0.234043 0.170213 0.085106 0.510638 0.170213 0.000000 0.680851 0.148936 0.000000 0.021277 0.702128 0.276596 0.063830 0.361702 0.063830 0.510638 0.042553 0.170213 0.063830 0.723404 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAASATGGAGTHRCTCTGGYT MEME-1 regular expression -------------------------------------------------------------------------------- [CT]CAA[GC]ATGG[AT]G[TA][CAT][AG]C[TC][CT][TA]G[GT][TC]T -------------------------------------------------------------------------------- Time 351.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 width = 43 sites = 10 llr = 526 E-value = 2.1e-105 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::7aa9:38:::::93a:::a:::1:::::9:::::a1 pos.-specific C :a::::1::::::::1a:::1:9a::a::::a::a11:aaa:: probability G 9::9aa:3::1:71a9::a16:1::::199a::a::::::::9 matrix T 1:a:::9::::a:1:::a::::::a::91:::a:::9a::::: bits 2.0 ** ** ** * * *** * **** ***** ***** 1.8 ** ** ** * * *** * **** ***** ***** 1.6 ******* **** * **** * ******************** 1.4 ******* **** ****** ********************** Relative 1.2 ************* ****** ********************** Entropy 1.0 ******************** ********************** (75.8 bits) 0.8 ******************** ********************** 0.6 ******************************************* 0.4 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GCTGGGTAAAATGAGGCTGAGACCTACTGGGCTGCATTCCCAG consensus G A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr2:105467633-105467733 + 36 1.37e-26 ttgaatagaa gctgggtaaaatgaggctgagacctactgggctgcattcccag aaggttaggc chr11:20200295-20200395 + 47 2.70e-26 ttaagtagga gctgggtaaaatgaggctgaaacctactgggctgcattcccag atggtgaagg chr2:253046-253146 + 1 1.08e-25 . gctgggtgaaataaggctgagacctactgggctgcattcccag aaggttaggc chr8:29359581-29359681 + 53 3.14e-25 ttaactcgga gctgggtaaaatgaggctgagacctacggggctgcattcccag ttggt chr21:29387525-29387625 - 14 5.83e-25 TTAAATAGGG GCTGGGCAAAATGAGGCTGAAACCTACTGGGCTGCATTCCCAG ATGGCTAAGG chr4:147708625-147708725 + 54 2.43e-24 ttgaataggg gctgggtaaaatgaggctgagagctactgggctgcattcccaa cagg chr12:15853853-15853953 - 10 5.22e-24 TTGAATAGGG GCTAGGTAAAATAGGGCTGAGACCTACTGGGCTGCATTCCCAG GAGGTTAAG chrX:40571460-40571560 - 6 7.88e-24 CTTGAATGGG GCTGGGTGAAATGAGCCTGAGACCTACTGGGCTGCCTTCCCAG AGGAC chr2:215618036-215618136 - 5 2.00e-23 TTGAACAGGG GCTGGGTGAAATATGGCTGAAACCTACTGAGCTGCATTCCCAG AAGG chr3:40351710-40351810 + 37 9.51e-22 ttgaataggg tctgggtaaagtgaggctggcacctacttggctgcactcccag gaggttaagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:105467633-105467733 1.4e-26 35_[+2]_22 chr11:20200295-20200395 2.7e-26 46_[+2]_11 chr2:253046-253146 1.1e-25 [+2]_57 chr8:29359581-29359681 3.1e-25 52_[+2]_5 chr21:29387525-29387625 5.8e-25 13_[-2]_44 chr4:147708625-147708725 2.4e-24 53_[+2]_4 chr12:15853853-15853953 5.2e-24 9_[-2]_48 chrX:40571460-40571560 7.9e-24 5_[-2]_52 chr2:215618036-215618136 2e-23 4_[-2]_53 chr3:40351710-40351810 9.5e-22 36_[+2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG width=43 seqs=10 chr2:105467633-105467733 ( 36) GCTGGGTAAAATGAGGCTGAGACCTACTGGGCTGCATTCCCAG 1 chr11:20200295-20200395 ( 47) GCTGGGTAAAATGAGGCTGAAACCTACTGGGCTGCATTCCCAG 1 chr2:253046-253146 ( 1) GCTGGGTGAAATAAGGCTGAGACCTACTGGGCTGCATTCCCAG 1 chr8:29359581-29359681 ( 53) GCTGGGTAAAATGAGGCTGAGACCTACGGGGCTGCATTCCCAG 1 chr21:29387525-29387625 ( 14) GCTGGGCAAAATGAGGCTGAAACCTACTGGGCTGCATTCCCAG 1 chr4:147708625-147708725 ( 54) GCTGGGTAAAATGAGGCTGAGAGCTACTGGGCTGCATTCCCAA 1 chr12:15853853-15853953 ( 10) GCTAGGTAAAATAGGGCTGAGACCTACTGGGCTGCATTCCCAG 1 chrX:40571460-40571560 ( 6) GCTGGGTGAAATGAGCCTGAGACCTACTGGGCTGCCTTCCCAG 1 chr2:215618036-215618136 ( 5) GCTGGGTGAAATATGGCTGAAACCTACTGAGCTGCATTCCCAG 1 chr3:40351710-40351810 ( 37) TCTGGGTAAAGTGAGGCTGGCACCTACTTGGCTGCACTCCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 12.0161 E= 2.1e-105 -997 -997 183 -130 -997 198 -997 -997 -997 -997 -997 202 -130 -997 183 -997 -997 -997 198 -997 -997 -997 198 -997 -997 -134 -997 187 150 -997 24 -997 202 -997 -997 -997 202 -997 -997 -997 187 -997 -134 -997 -997 -997 -997 202 28 -997 147 -997 170 -997 -134 -130 -997 -997 198 -997 -997 -134 183 -997 -997 198 -997 -997 -997 -997 -997 202 -997 -997 198 -997 187 -997 -134 -997 28 -134 124 -997 202 -997 -997 -997 -997 183 -134 -997 -997 198 -997 -997 -997 -997 -997 202 202 -997 -997 -997 -997 198 -997 -997 -997 -997 -134 187 -997 -997 183 -130 -130 -997 183 -997 -997 -997 198 -997 -997 198 -997 -997 -997 -997 -997 202 -997 -997 198 -997 -997 198 -997 -997 187 -134 -997 -997 -997 -134 -997 187 -997 -997 -997 202 -997 198 -997 -997 -997 198 -997 -997 -997 198 -997 -997 202 -997 -997 -997 -130 -997 183 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 10 E= 2.1e-105 0.000000 0.000000 0.900000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.700000 0.000000 0.300000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.300000 0.000000 0.700000 0.000000 0.800000 0.000000 0.100000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.300000 0.100000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.900000 0.100000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGGTAAAATGAGGCTGARACCTACTGGGCTGCATTCCCAG MEME-2 regular expression -------------------------------------------------------------------------------- GCTGGGT[AG]AAAT[GA]AGGCTGA[GA]ACCTACTGGGCTGCATTCCCAG -------------------------------------------------------------------------------- Time 658.74 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGTCARAGGTCAVRG MEME-3 width = 16 sites = 111 llr = 1150 E-value = 3.4e-081 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 71:::a472:::7442 pos.-specific C ::::8:1:::161221 probability G 39911:5289111335 matrix T ::181::::183:112 bits 2.0 * 1.8 * 1.6 * * 1.4 ** * * Relative 1.2 ** * ** Entropy 1.0 ****** *** (14.9 bits) 0.8 ****** ***** 0.6 ************* 0.4 ************* 0.2 **************** 0.0 ---------------- Multilevel AGGTCAGAGGTCAAAG consensus G AG T GGT sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr15:74777959-74778059 - 60 4.60e-10 AAAAAAGTTA AGGTCAAAGGTCAAAG CCCTAGTGAG chr12:108675723-10867582 + 54 2.12e-09 tgaaaagcac aggtcaaaggtcaggg cttccgaata chr18:67433904-67434004 + 60 2.95e-08 gaccaccacc gggtcagaggttaagg ctagtttaat chr19:58535795-58535895 + 33 3.62e-08 aagagtgata aggtcagAAGTCAGAG GTCAGCAGGG chr14:90580738-90580838 - 9 6.07e-08 AGGCTGATTG AGGTCAAAGGTCAGCA GCATCGCC chr13:91136742-91136842 - 58 6.07e-08 GATTTGCCAA AGGTCAAAGGTCATGA CAAGTGAGTG chr14:54790957-54791057 + 28 9.58e-08 CAGGAAGAAT AGGTCAAAGGTTGAAG GCCAAAGGTA chr7:73545345-73545445 - 41 9.58e-08 TTACCCACAG GGGTCAAAGGTCAAGC AGTTAAATCT chrX:74342158-74342258 - 27 1.13e-07 ATAACCAGTT AGGTCAGAGGTCGATG TTTAACTACC chr22:18054195-18054295 - 41 1.13e-07 GATCAGCAGA AGGTCAAAGGTGAGAG TCATTAGCAT chr15:65225289-65225389 - 77 1.32e-07 CTTGGCCA AGGTCAGAGGGCAAGT GGAGGGCAGG chr1:44244848-44244948 - 30 1.32e-07 CCAGCCCTGG GGGTCAGAGGTCAGCT CCTGTCACTG chr1:91717762-91717862 + 83 1.56e-07 AATTATCAGG AGGTCAAAGGTTAATA AA chr12:123928829-12392892 - 43 2.12e-07 CTGGCTCTCA GGGTCAAGGGTCAAGA GTCTTTGACC chr19:58557920-58558020 - 41 2.43e-07 CGGTTGCTGA GGGTCAGAGGTGAAGG GCCCCGAGCG chr19:1068070-1068170 - 14 2.43e-07 GACCCCACAG GGGTCAAAGGCCAGAG GTCACAGGGC chr11:65903093-65903193 - 71 3.20e-07 GAAGCTGGTG AGGTCAGAGGCCAGGA ACGTTTCTGC chr19:50790933-50791033 - 79 3.20e-07 GCGTAG AGGTTAAAGGTTAGAG GTCAAGAGGG chr1:167869372-167869472 - 6 3.67e-07 AACAGTTGCT AGGTCAGGGGTCGAAT TTTAA chr7:150961834-150961934 - 40 4.24e-07 TGTGTGTCAG AGGCCAGAGGTCAGGG GACAAGAGTG chr14:29601986-29602086 + 76 4.90e-07 GGGCCCAGGG AGGGCAGGGGTCACGG GAGTAGTAT chr5:135329600-135329700 - 33 5.62e-07 CCAATGTCAC AGGTTAAAGGTCACCG CCTTGGCTTC chr11:65870067-65870167 + 1 5.62e-07 . AGGGCAGAGGGCAGAG GGCAGGTGGG chr9:4910762-4910862 - 23 5.62e-07 TTGAACCTAG GGGTCAGAGGTTGCAG TGAGCCAAGA chr10:24256651-24256751 + 48 6.43e-07 ACGCATCATA AGGTCATAGGTCAGTG AAAACAGCTG chr5:99032605-99032705 - 74 6.43e-07 TGGGGTCATG AGGTCAAAGGGCAGGC ATAGTTCATA chr4:140116318-140116418 - 68 7.29e-07 TGAAGCAGTG GGGTTAGAGGTTAGAG TGGCAGTCTC chr12:109461040-10946114 - 50 8.25e-07 TCAGCCTTGG GAGTCAGAGGTCACAG TCTGCGAGGG chr3:17327173-17327273 - 69 9.35e-07 GTAGGAAATG AGGTCAAAGGGTACAA CTAGGTTGAG chr5:1199744-1199844 + 69 1.36e-06 CTGTGTCCTA GGGGCAAAGGTCAGGC GCCTAAACTC chr6:27773823-27773923 - 20 1.36e-06 AACCAGTGTT AGGTCAGGGGTTAATC TTTAACTACC chr9:114161972-114162072 - 67 1.54e-06 GCAGAGCCAG GGGTGAAAGGTCAGCG GGAAGACCAG chr6:47111687-47111787 - 57 1.54e-06 AATTCCAGTG GGGGCAAAGGTCAGCA GGTTATACAC chr19:43560588-43560688 + 79 1.54e-06 GCGAGCATGA GGGGCAGAGGTCAGTA TGGGAT chr10:71400092-71400192 + 4 1.54e-06 CAC AGGTGAAAGGTCATCG CATGGCTCAG chr16:3163384-3163484 + 10 1.54e-06 CTGGGCCCT GGGTCACAGGTCGAGG tgtcaggcct chr16:57700740-57700840 - 36 1.94e-06 CCAGCTACTC AGGTCATAAGTCAAAT ACTTAAAGAG chr5:173864028-173864128 + 29 1.94e-06 CTAATATAGA GGGTTAGAGGTCATGT CAGCCTTCCA chr6:162135469-162135569 + 55 1.94e-06 AGAAGGTAGa aggtgaaaggtgaaag gtgaaaggct chr19:55544898-55544998 + 37 2.18e-06 TGTCCTGGAG AGGTTAGGGGTCACTG CCACAGAGGC chrX:149853871-149853971 - 31 2.18e-06 ACATAATAGG AGGTCAGAAGTCGACA TTACACCCAG chr1:27488572-27488672 - 66 2.18e-06 CGCACAGTAA AGGGCAGAGGTTACTT AACTAAATTG chr3:36733252-36733352 - 40 2.44e-06 AGAGGGTGGA AGGGCAAAGGCCAGGT TATTTATAGC chr7:112537721-112537821 - 46 3.04e-06 GTATTCATGA AGGTCAAAGTTCACCA AAGTCTAAAT chr21:46455647-46455747 - 34 3.04e-06 CAGCTGGAGC AGTTCAGAGGCTAGAG GTTGGAATGA chr2:38669001-38669101 - 36 3.04e-06 ATAACTGGTT AGGTCAGGGGTCGATC TTTAACTACC chr2:144572442-144572542 + 69 3.04e-06 GGGAGTGCTG GGTGCAGAGGTCAAAT GTAGTAAACG chr17:17789767-17789867 + 32 3.40e-06 CCTGCCCCCA GGTTCAAAGGTCACCA TCGTTCTGCC chr5:76856809-76856909 + 68 3.40e-06 gcagaacaca aggtcaggagttcaag accagcccgg chr17:59844222-59844322 + 34 3.40e-06 ggatcacttg aggtcaggagttcaag accagcctgg chr10:43430880-43430980 - 16 3.40e-06 GGATCCTCTG AGGTCAGGAGTTCAAG ACTAGCCTGA chr9:129479939-129480039 - 34 3.40e-06 GTGTCACTTG AGGTCAGGAGTTCAAG ACTAGTCTGG chr5:10487574-10487674 + 50 3.40e-06 ggatcaccag aggtcaggagttcaag accagcctgg chr12:76275693-76275793 + 42 3.80e-06 GGTGGAGTTG AGGTCAGAGGGTGTGG GGTGCAGTTC chr1:52738964-52739064 - 40 3.80e-06 AGATCACCCG AGGTCAAGAGTTCAAG ACCCACATGG chr2:12178772-12178872 - 63 4.23e-06 CTGAACAGTT GGGTGAAGGGTCAAGA TCTGTTATGT chr3:195715903-195716003 + 29 4.72e-06 ggatcacatg aggtcaggagttcgag accaacttgg chr1:116721944-116722044 + 59 4.72e-06 gccaggTGAG AGGGGAAAGGTCAGTG CCAGCCCTCC chrX:149848694-149848794 + 23 4.72e-06 cagagtttat agttcaggggtcacca tcagacatgt chr3:171013731-171013831 - 85 5.24e-06 . AGTTCAAAGGTTCAGT CAACATCCCC chr1:192118977-192119077 - 36 5.24e-06 TCTGGCTCAA GGTTCAGGGGTCATAT CTCGACCCAA chr1:211783814-211783914 + 46 5.24e-06 caaaacaaaa aggacaaaggtcattt ggtgggaacg chr7:107579843-107579943 + 26 5.81e-06 TCCAAGCATC AGGTCAAAAGTCTAAC TCATTCTCTG chr6:118809159-118809259 + 69 7.12e-06 GCCCCAAAGT AGTTCAAAAGCCAGAG GGTAGCTGGA chr1:25232962-25233062 - 39 7.12e-06 AGAAGCGGTT GGGTCATGGGTCACGA GTCTGGGTGG chr2:61938289-61938389 - 15 7.12e-06 TGAAGGTTAA AGGGAAAAGGTCAAGT GCCTTGTTTA chr20:44531920-44532020 - 11 7.88e-06 ACGCGGGGCG GGGTCAAAGGGCGTCG GGGGCGCCGT chr6:163421726-163421826 - 36 7.88e-06 TCAGATCATG GGGTCAAGAGTTCAAG ATCAGCCTGG chr3:13431267-13431367 - 46 9.62e-06 GTGGATCACG AGGTCAGGAGTTGGCG ACCAGCCTGG chr1:182584711-182584811 - 35 9.62e-06 GACAAAATTG AGGTCAAAGTTGAGGA TGTCAGGACA chr3:53350586-53350686 + 41 9.62e-06 ctctggcatc tggtcaggggtcaaga agctctggcg chr14:99572325-99572425 - 63 1.06e-05 TTTCCAGCAA AGGACAGATGTCAGAG CTTTCCCGGA chr20:51659667-51659767 + 43 1.17e-05 TTTCACTTCC AGGCCAAAGGGCACTG CATGGTAACA chr19:10881363-10881463 + 12 1.17e-05 tctgagcagg aggtcacaggtgacct cagagagcag chr16:2404164-2404264 + 44 1.17e-05 TCTCTGCTGT AGTTCAAAGGCGAAGG GTGATGGTCT chr11:72741362-72741462 - 30 1.17e-05 GCTCCCGCTG GGGGCAGTGGTCACAG GAGGATCTTC chr17:1213349-1213449 - 61 1.17e-05 GTGAGTCACG AGGTCAGGAGTTTGAG ACCAGCCTGA chr3:14391242-14391342 + 58 1.70e-05 CACACAGTAA ATGACAGAGGTCATAG GGCTCATGTC chr3:185734644-185734744 - 20 1.70e-05 TAATTGGCCA AGGTCAAATGGTAAGT GGGAAAACCT chr3:17313707-17313807 - 12 1.87e-05 TGTGGGTTAG AGATAAGAGGTCAAAG GCAATAAGAT chr12:116759758-11675985 - 38 1.87e-05 CGCCCAAGGA GAGTGAGAGGTCAGAA ACGCCTAGCC chr2:169072618-169072718 + 14 2.05e-05 TCTTTCACAC AGTTTAGAGTTCAGAG AGTTTTAGTT chr15:40137764-40137864 - 85 2.05e-05 . AGGTCAGGGGGTCAGC AGGTTTGGTT chr11:124446711-12444681 + 78 2.24e-05 GGAAGACCAA GTGTCAAAGGTTACTA AAGTCTC chr2:216681603-216681703 - 3 2.45e-05 AAGTCCCAAA AGGTGAAAGGTCTTGA GA chr4:40200746-40200846 - 59 2.45e-05 TCTACGAAAT GGGGAAGAGGTCACTG TGACTTCAGT chr11:64917149-64917249 - 78 2.45e-05 AGAGGGG AGGTTAAAGGTCCTCC CACACAGTAC chr19:12792539-12792639 + 54 2.67e-05 CTGCTGCTTG GGGTCAAGGGACACGC CTTCTGAACG chr8:127963580-127963680 - 28 2.92e-05 CAAGGCACGC AGGACAAAGGCCATGC TGGATTTAGG chr2:101781194-101781294 + 63 2.92e-05 ggaggctgag aagccaaaggtcgagg ggctggcatc chr11:47853247-47853347 - 35 2.92e-05 GAACATTAAT AGTTCAAAGGGTATTT GAGTTTTCCA chr17:77279661-77279761 - 64 2.92e-05 CCTTATCTGG GGGTTAGAGGCTCAGG AGGCCTCGGG chr16:85359263-85359363 - 26 2.92e-05 TACAGATGTG AGGACAGAGGCTCAGG ATGACTCATT chr20:38373321-38373421 + 67 2.92e-05 GAGAACAGGA CGGGCAAAGGGCAGGG AGTGGAACGC chr19:32691201-32691301 - 57 3.18e-05 GGACATTCGA AGGGCAGAAGTCTGAC CTTTGCAAGC chr17:47288504-47288604 - 15 3.18e-05 TGCCTTGCAT AGATTAGGGGTCAAAT GTTGCTGACT chr1:65467553-65467653 + 27 3.18e-05 tcaagctgca gtgtcacaggtcagac tgctgcacta chr6:39999022-39999122 - 55 3.77e-05 GTGTAGCGCA AGGTCACAAGACAGAT AAGTGCGAGC chr7:154676694-154676794 - 13 3.77e-05 CACAACTGCA AGGTCACAAGACAGAT AAGCACAAGC chr11:3057433-3057533 + 81 4.10e-05 CCCAGCCTGG AGGTCAGAGGCGGCCT CGGG chr12:406652-406752 + 22 4.46e-05 ttgaatcctg gaggcagaggttgcag tgagccgaga chr20:57457048-57457148 + 24 4.46e-05 atgaaccccc aggttgaaggtcacat aacctgggca chr1:162680981-162681081 - 71 4.46e-05 AACCAAACTG CAGTCAAAGGTCATAT AGATGAAATC chr1:109085103-109085203 + 25 4.84e-05 atcagttgct aagtcacgggtcgaat tttaactacc chr20:33690049-33690149 + 72 6.16e-05 tacacgatgc gtgtcaaagtttaaga aaacaaaaca chr9:68643826-68643926 + 31 6.16e-05 ctctagccac gggtcaaatttcactg atgtcaatta chr7:100601988-100602088 - 12 6.67e-05 GGAGCAGTGA GGGGCAGAGGCCGTCT CCCAGGCCTC chr14:103356329-10335642 + 78 7.79e-05 agcctttggg aggtcatagggttaga tgaggtc chr19:34807380-34807480 - 37 1.06e-04 GGAGATTCCA GGTTTAGGGGTGAAGA TGGTCAGGAC chr3:141646752-141646852 + 79 1.52e-04 caaccccagt agttcagagtgtacca gggcag chr10:110567215-11056731 - 15 2.45e-04 TCCGAGCGCG GGGCCAATGGTCGCGT CCACAAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:74777959-74778059 4.6e-10 59_[-3]_25 chr12:108675723-10867582 2.1e-09 53_[+3]_31 chr18:67433904-67434004 3e-08 59_[+3]_25 chr19:58535795-58535895 3.6e-08 32_[+3]_52 chr14:90580738-90580838 6.1e-08 8_[-3]_76 chr13:91136742-91136842 6.1e-08 57_[-3]_27 chr14:54790957-54791057 9.6e-08 27_[+3]_57 chr7:73545345-73545445 9.6e-08 40_[-3]_44 chrX:74342158-74342258 1.1e-07 26_[-3]_58 chr22:18054195-18054295 1.1e-07 40_[-3]_44 chr15:65225289-65225389 1.3e-07 76_[-3]_8 chr1:44244848-44244948 1.3e-07 29_[-3]_55 chr1:91717762-91717862 1.6e-07 82_[+3]_2 chr12:123928829-12392892 2.1e-07 42_[-3]_42 chr19:58557920-58558020 2.4e-07 40_[-3]_44 chr19:1068070-1068170 2.4e-07 13_[-3]_71 chr11:65903093-65903193 3.2e-07 70_[-3]_14 chr19:50790933-50791033 3.2e-07 78_[-3]_6 chr1:167869372-167869472 3.7e-07 5_[-3]_79 chr7:150961834-150961934 4.2e-07 39_[-3]_45 chr14:29601986-29602086 4.9e-07 75_[+3]_9 chr5:135329600-135329700 5.6e-07 32_[-3]_52 chr11:65870067-65870167 5.6e-07 [+3]_84 chr9:4910762-4910862 5.6e-07 22_[-3]_62 chr10:24256651-24256751 6.4e-07 47_[+3]_37 chr5:99032605-99032705 6.4e-07 73_[-3]_11 chr4:140116318-140116418 7.3e-07 67_[-3]_17 chr12:109461040-10946114 8.2e-07 49_[-3]_35 chr3:17327173-17327273 9.3e-07 68_[-3]_16 chr5:1199744-1199844 1.4e-06 68_[+3]_16 chr6:27773823-27773923 1.4e-06 19_[-3]_65 chr9:114161972-114162072 1.5e-06 66_[-3]_18 chr6:47111687-47111787 1.5e-06 56_[-3]_28 chr19:43560588-43560688 1.5e-06 78_[+3]_6 chr10:71400092-71400192 1.5e-06 3_[+3]_81 chr16:3163384-3163484 1.5e-06 9_[+3]_75 chr16:57700740-57700840 1.9e-06 35_[-3]_49 chr5:173864028-173864128 1.9e-06 28_[+3]_56 chr6:162135469-162135569 1.9e-06 54_[+3]_30 chr19:55544898-55544998 2.2e-06 36_[+3]_48 chrX:149853871-149853971 2.2e-06 30_[-3]_54 chr1:27488572-27488672 2.2e-06 65_[-3]_19 chr3:36733252-36733352 2.4e-06 39_[-3]_45 chr7:112537721-112537821 3e-06 45_[-3]_39 chr21:46455647-46455747 3e-06 33_[-3]_51 chr2:38669001-38669101 3e-06 35_[-3]_49 chr2:144572442-144572542 3e-06 68_[+3]_16 chr17:17789767-17789867 3.4e-06 31_[+3]_53 chr5:76856809-76856909 3.4e-06 67_[+3]_17 chr17:59844222-59844322 3.4e-06 33_[+3]_51 chr10:43430880-43430980 3.4e-06 15_[-3]_69 chr9:129479939-129480039 3.4e-06 33_[-3]_51 chr5:10487574-10487674 3.4e-06 49_[+3]_35 chr12:76275693-76275793 3.8e-06 41_[+3]_43 chr1:52738964-52739064 3.8e-06 39_[-3]_45 chr2:12178772-12178872 4.2e-06 62_[-3]_22 chr3:195715903-195716003 4.7e-06 28_[+3]_56 chr1:116721944-116722044 4.7e-06 58_[+3]_26 chrX:149848694-149848794 4.7e-06 22_[+3]_62 chr3:171013731-171013831 5.2e-06 84_[-3] chr1:192118977-192119077 5.2e-06 35_[-3]_49 chr1:211783814-211783914 5.2e-06 45_[+3]_39 chr7:107579843-107579943 5.8e-06 25_[+3]_59 chr6:118809159-118809259 7.1e-06 68_[+3]_16 chr1:25232962-25233062 7.1e-06 38_[-3]_46 chr2:61938289-61938389 7.1e-06 14_[-3]_70 chr20:44531920-44532020 7.9e-06 10_[-3]_74 chr6:163421726-163421826 7.9e-06 35_[-3]_49 chr3:13431267-13431367 9.6e-06 45_[-3]_39 chr1:182584711-182584811 9.6e-06 34_[-3]_50 chr3:53350586-53350686 9.6e-06 40_[+3]_44 chr14:99572325-99572425 1.1e-05 62_[-3]_22 chr20:51659667-51659767 1.2e-05 42_[+3]_42 chr19:10881363-10881463 1.2e-05 11_[+3]_73 chr16:2404164-2404264 1.2e-05 43_[+3]_41 chr11:72741362-72741462 1.2e-05 29_[-3]_55 chr17:1213349-1213449 1.2e-05 60_[-3]_24 chr3:14391242-14391342 1.7e-05 57_[+3]_27 chr3:185734644-185734744 1.7e-05 19_[-3]_65 chr3:17313707-17313807 1.9e-05 11_[-3]_73 chr12:116759758-11675985 1.9e-05 37_[-3]_47 chr2:169072618-169072718 2e-05 13_[+3]_71 chr15:40137764-40137864 2e-05 84_[-3] chr11:124446711-12444681 2.2e-05 77_[+3]_7 chr2:216681603-216681703 2.4e-05 2_[-3]_82 chr4:40200746-40200846 2.4e-05 58_[-3]_26 chr11:64917149-64917249 2.4e-05 77_[-3]_7 chr19:12792539-12792639 2.7e-05 53_[+3]_31 chr8:127963580-127963680 2.9e-05 27_[-3]_57 chr2:101781194-101781294 2.9e-05 62_[+3]_22 chr11:47853247-47853347 2.9e-05 34_[-3]_50 chr17:77279661-77279761 2.9e-05 63_[-3]_21 chr16:85359263-85359363 2.9e-05 25_[-3]_59 chr20:38373321-38373421 2.9e-05 66_[+3]_18 chr19:32691201-32691301 3.2e-05 56_[-3]_28 chr17:47288504-47288604 3.2e-05 14_[-3]_70 chr1:65467553-65467653 3.2e-05 26_[+3]_58 chr6:39999022-39999122 3.8e-05 54_[-3]_30 chr7:154676694-154676794 3.8e-05 12_[-3]_72 chr11:3057433-3057533 4.1e-05 80_[+3]_4 chr12:406652-406752 4.5e-05 21_[+3]_63 chr20:57457048-57457148 4.5e-05 23_[+3]_61 chr1:162680981-162681081 4.5e-05 70_[-3]_14 chr1:109085103-109085203 4.8e-05 24_[+3]_60 chr20:33690049-33690149 6.2e-05 71_[+3]_13 chr9:68643826-68643926 6.2e-05 30_[+3]_54 chr7:100601988-100602088 6.7e-05 11_[-3]_73 chr14:103356329-10335642 7.8e-05 77_[+3]_7 chr19:34807380-34807480 0.00011 36_[-3]_48 chr3:141646752-141646852 0.00015 78_[+3]_6 chr10:110567215-11056731 0.00025 14_[-3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGTCARAGGTCAVRG width=16 seqs=111 chr15:74777959-74778059 ( 60) AGGTCAAAGGTCAAAG 1 chr12:108675723-10867582 ( 54) AGGTCAAAGGTCAGGG 1 chr18:67433904-67434004 ( 60) GGGTCAGAGGTTAAGG 1 chr19:58535795-58535895 ( 33) AGGTCAGAAGTCAGAG 1 chr14:90580738-90580838 ( 9) AGGTCAAAGGTCAGCA 1 chr13:91136742-91136842 ( 58) AGGTCAAAGGTCATGA 1 chr14:54790957-54791057 ( 28) AGGTCAAAGGTTGAAG 1 chr7:73545345-73545445 ( 41) GGGTCAAAGGTCAAGC 1 chrX:74342158-74342258 ( 27) AGGTCAGAGGTCGATG 1 chr22:18054195-18054295 ( 41) AGGTCAAAGGTGAGAG 1 chr15:65225289-65225389 ( 77) AGGTCAGAGGGCAAGT 1 chr1:44244848-44244948 ( 30) GGGTCAGAGGTCAGCT 1 chr1:91717762-91717862 ( 83) AGGTCAAAGGTTAATA 1 chr12:123928829-12392892 ( 43) GGGTCAAGGGTCAAGA 1 chr19:58557920-58558020 ( 41) GGGTCAGAGGTGAAGG 1 chr19:1068070-1068170 ( 14) GGGTCAAAGGCCAGAG 1 chr11:65903093-65903193 ( 71) AGGTCAGAGGCCAGGA 1 chr19:50790933-50791033 ( 79) AGGTTAAAGGTTAGAG 1 chr1:167869372-167869472 ( 6) AGGTCAGGGGTCGAAT 1 chr7:150961834-150961934 ( 40) AGGCCAGAGGTCAGGG 1 chr14:29601986-29602086 ( 76) AGGGCAGGGGTCACGG 1 chr5:135329600-135329700 ( 33) AGGTTAAAGGTCACCG 1 chr11:65870067-65870167 ( 1) AGGGCAGAGGGCAGAG 1 chr9:4910762-4910862 ( 23) GGGTCAGAGGTTGCAG 1 chr10:24256651-24256751 ( 48) AGGTCATAGGTCAGTG 1 chr5:99032605-99032705 ( 74) AGGTCAAAGGGCAGGC 1 chr4:140116318-140116418 ( 68) GGGTTAGAGGTTAGAG 1 chr12:109461040-10946114 ( 50) GAGTCAGAGGTCACAG 1 chr3:17327173-17327273 ( 69) AGGTCAAAGGGTACAA 1 chr5:1199744-1199844 ( 69) GGGGCAAAGGTCAGGC 1 chr6:27773823-27773923 ( 20) AGGTCAGGGGTTAATC 1 chr9:114161972-114162072 ( 67) GGGTGAAAGGTCAGCG 1 chr6:47111687-47111787 ( 57) GGGGCAAAGGTCAGCA 1 chr19:43560588-43560688 ( 79) GGGGCAGAGGTCAGTA 1 chr10:71400092-71400192 ( 4) AGGTGAAAGGTCATCG 1 chr16:3163384-3163484 ( 10) GGGTCACAGGTCGAGG 1 chr16:57700740-57700840 ( 36) AGGTCATAAGTCAAAT 1 chr5:173864028-173864128 ( 29) GGGTTAGAGGTCATGT 1 chr6:162135469-162135569 ( 55) AGGTGAAAGGTGAAAG 1 chr19:55544898-55544998 ( 37) AGGTTAGGGGTCACTG 1 chrX:149853871-149853971 ( 31) AGGTCAGAAGTCGACA 1 chr1:27488572-27488672 ( 66) AGGGCAGAGGTTACTT 1 chr3:36733252-36733352 ( 40) AGGGCAAAGGCCAGGT 1 chr7:112537721-112537821 ( 46) AGGTCAAAGTTCACCA 1 chr21:46455647-46455747 ( 34) AGTTCAGAGGCTAGAG 1 chr2:38669001-38669101 ( 36) AGGTCAGGGGTCGATC 1 chr2:144572442-144572542 ( 69) GGTGCAGAGGTCAAAT 1 chr17:17789767-17789867 ( 32) GGTTCAAAGGTCACCA 1 chr5:76856809-76856909 ( 68) AGGTCAGGAGTTCAAG 1 chr17:59844222-59844322 ( 34) AGGTCAGGAGTTCAAG 1 chr10:43430880-43430980 ( 16) AGGTCAGGAGTTCAAG 1 chr9:129479939-129480039 ( 34) AGGTCAGGAGTTCAAG 1 chr5:10487574-10487674 ( 50) AGGTCAGGAGTTCAAG 1 chr12:76275693-76275793 ( 42) AGGTCAGAGGGTGTGG 1 chr1:52738964-52739064 ( 40) AGGTCAAGAGTTCAAG 1 chr2:12178772-12178872 ( 63) GGGTGAAGGGTCAAGA 1 chr3:195715903-195716003 ( 29) AGGTCAGGAGTTCGAG 1 chr1:116721944-116722044 ( 59) AGGGGAAAGGTCAGTG 1 chrX:149848694-149848794 ( 23) AGTTCAGGGGTCACCA 1 chr3:171013731-171013831 ( 85) AGTTCAAAGGTTCAGT 1 chr1:192118977-192119077 ( 36) GGTTCAGGGGTCATAT 1 chr1:211783814-211783914 ( 46) AGGACAAAGGTCATTT 1 chr7:107579843-107579943 ( 26) AGGTCAAAAGTCTAAC 1 chr6:118809159-118809259 ( 69) AGTTCAAAAGCCAGAG 1 chr1:25232962-25233062 ( 39) GGGTCATGGGTCACGA 1 chr2:61938289-61938389 ( 15) AGGGAAAAGGTCAAGT 1 chr20:44531920-44532020 ( 11) GGGTCAAAGGGCGTCG 1 chr6:163421726-163421826 ( 36) GGGTCAAGAGTTCAAG 1 chr3:13431267-13431367 ( 46) AGGTCAGGAGTTGGCG 1 chr1:182584711-182584811 ( 35) AGGTCAAAGTTGAGGA 1 chr3:53350586-53350686 ( 41) TGGTCAGGGGTCAAGA 1 chr14:99572325-99572425 ( 63) AGGACAGATGTCAGAG 1 chr20:51659667-51659767 ( 43) AGGCCAAAGGGCACTG 1 chr19:10881363-10881463 ( 12) AGGTCACAGGTGACCT 1 chr16:2404164-2404264 ( 44) AGTTCAAAGGCGAAGG 1 chr11:72741362-72741462 ( 30) GGGGCAGTGGTCACAG 1 chr17:1213349-1213449 ( 61) AGGTCAGGAGTTTGAG 1 chr3:14391242-14391342 ( 58) ATGACAGAGGTCATAG 1 chr3:185734644-185734744 ( 20) AGGTCAAATGGTAAGT 1 chr3:17313707-17313807 ( 12) AGATAAGAGGTCAAAG 1 chr12:116759758-11675985 ( 38) GAGTGAGAGGTCAGAA 1 chr2:169072618-169072718 ( 14) AGTTTAGAGTTCAGAG 1 chr15:40137764-40137864 ( 85) AGGTCAGGGGGTCAGC 1 chr11:124446711-12444681 ( 78) GTGTCAAAGGTTACTA 1 chr2:216681603-216681703 ( 3) AGGTGAAAGGTCTTGA 1 chr4:40200746-40200846 ( 59) GGGGAAGAGGTCACTG 1 chr11:64917149-64917249 ( 78) AGGTTAAAGGTCCTCC 1 chr19:12792539-12792639 ( 54) GGGTCAAGGGACACGC 1 chr8:127963580-127963680 ( 28) AGGACAAAGGCCATGC 1 chr2:101781194-101781294 ( 63) AAGCCAAAGGTCGAGG 1 chr11:47853247-47853347 ( 35) AGTTCAAAGGGTATTT 1 chr17:77279661-77279761 ( 64) GGGTTAGAGGCTCAGG 1 chr16:85359263-85359363 ( 26) AGGACAGAGGCTCAGG 1 chr20:38373321-38373421 ( 67) CGGGCAAAGGGCAGGG 1 chr19:32691201-32691301 ( 57) AGGGCAGAAGTCTGAC 1 chr17:47288504-47288604 ( 15) AGATTAGGGGTCAAAT 1 chr1:65467553-65467653 ( 27) GTGTCACAGGTCAGAC 1 chr6:39999022-39999122 ( 55) AGGTCACAAGACAGAT 1 chr7:154676694-154676794 ( 13) AGGTCACAAGACAGAT 1 chr11:3057433-3057533 ( 81) AGGTCAGAGGCGGCCT 1 chr12:406652-406752 ( 22) GAGGCAGAGGTTGCAG 1 chr20:57457048-57457148 ( 24) AGGTTGAAGGTCACAT 1 chr1:162680981-162681081 ( 71) CAGTCAAAGGTCATAT 1 chr1:109085103-109085203 ( 25) AAGTCACGGGTCGAAT 1 chr20:33690049-33690149 ( 72) GTGTCAAAGTTTAAGA 1 chr9:68643826-68643926 ( 31) GGGTCAAATTTCACTG 1 chr7:100601988-100602088 ( 12) GGGGCAGAGGCCGTCT 1 chr14:103356329-10335642 ( 78) AGGTCATAGGGTTAGA 1 chr19:34807380-34807480 ( 37) GGTTTAGGGGTGAAGA 1 chr3:141646752-141646852 ( 79) AGTTCAGAGTGTACCA 1 chr10:110567215-11056731 ( 15) GGGCCAATGGTCGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 9.43842 E= 3.4e-081 141 -381 32 -477 -219 -1344 185 -278 -377 -1344 179 -119 -245 -281 -81 165 -319 168 -201 -132 201 -1344 -481 -1344 84 -223 89 -278 160 -1344 -11 -377 -61 -1344 168 -319 -1344 -1344 190 -219 -319 -135 -111 162 -1344 134 -181 22 149 -111 -81 -245 58 -29 23 -97 65 -73 36 -87 -25 -123 89 -19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 111 E= 3.4e-081 0.657658 0.018018 0.315315 0.009009 0.054054 0.000000 0.909910 0.036036 0.018018 0.000000 0.873874 0.108108 0.045045 0.036036 0.144144 0.774775 0.027027 0.810811 0.063063 0.099099 0.990991 0.000000 0.009009 0.000000 0.441441 0.054054 0.468468 0.036036 0.747748 0.000000 0.234234 0.018018 0.162162 0.000000 0.810811 0.027027 0.000000 0.000000 0.945946 0.054054 0.027027 0.099099 0.117117 0.756757 0.000000 0.639640 0.072072 0.288288 0.693694 0.117117 0.144144 0.045045 0.369369 0.207207 0.297297 0.126126 0.387387 0.153153 0.324324 0.135135 0.207207 0.108108 0.468468 0.216216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCARAGGTCAVRG MEME-3 regular expression -------------------------------------------------------------------------------- [AG]GGTCA[GA][AG]GGT[CT]A[AGC][AG][GTA] -------------------------------------------------------------------------------- Time 967.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:73852496-73852596 4.73e-02 100 chrX:65926165-65926265 2.89e-01 100 chr1:92544689-92544789 4.94e-01 100 chr17:15648337-15648437 7.76e-01 100 chr17:55814436-55814536 6.89e-01 100 chr11:46251511-46251611 3.22e-01 100 chr3:9978600-9978700 8.22e-01 100 chrX:2630413-2630513 7.04e-01 100 chr14:94109565-94109665 1.21e-04 3_[-1(1.51e-08)]_75 chr7:100601988-100602088 7.07e-02 11_[-3(6.67e-05)]_73 chr19:52692385-52692485 4.56e-05 22_[-1(1.65e-08)]_56 chr12:118373624-11837372 6.75e-02 100 chr19:34807380-34807480 1.11e-02 100 chr17:8210060-8210160 1.77e-01 100 chr1:121080559-121080659 5.52e-01 100 chr5:90637624-90637724 9.59e-02 100 chr1:165773254-165773354 3.53e-01 100 chr22:38504669-38504769 5.68e-02 100 chr4:67702160-67702260 1.10e-03 54_[-1(1.65e-07)]_24 chr20:38373321-38373421 1.42e-02 66_[+3(2.92e-05)]_18 chr12:108485368-10848546 5.15e-02 100 chr2:174035846-174035946 2.90e-01 100 chr8:100883971-100884071 5.87e-01 100 chr9:120766641-120766741 5.56e-01 100 chr9:136363563-136363663 3.75e-01 100 chr3:72082366-72082466 1.53e-01 100 chr6:27773823-27773923 5.28e-03 19_[-3(1.36e-06)]_65 chr19:49118702-49118802 1.04e-01 100 chr5:126884221-126884321 4.23e-01 100 chr13:91136742-91136842 3.76e-04 16_[-3(5.24e-06)]_25_[-3(6.07e-08)]_\ 27 chr5:43301495-43301595 2.12e-01 100 chr12:12266937-12267037 3.00e-01 100 chr21:37566731-37566831 2.90e-01 100 chr7:50534857-50534957 3.52e-01 100 chr13:52513934-52514034 8.39e-01 100 chr12:108675723-10867582 3.09e-05 53_[+3(2.12e-09)]_31 chr1:162412034-162412134 4.83e-01 100 chr12:68179030-68179130 3.68e-01 100 chr1:90925935-90926035 1.63e-02 100 chr12:91836667-91836767 2.61e-06 28_[-1(5.28e-10)]_50 chr2:103506807-103506907 7.92e-02 100 chr6:162135469-162135569 3.50e-04 54_[+3(1.94e-06)]_30 chr9:127844993-127845093 7.43e-02 100 chr15:40137764-40137864 9.54e-03 84_[-3(2.05e-05)] chr8:29359581-29359681 5.60e-28 24_[-1(1.23e-10)]_6_[+2(3.14e-25)]_\ 5 chr15:75140518-75140618 4.07e-05 28_[-1(7.59e-09)]_50 chr2:43294315-43294415 4.25e-02 100 chr16:29761750-29761850 9.19e-01 100 chr15:41116522-41116622 9.38e-01 100 chr12:6689190-6689290 5.51e-01 100 chr7:73545345-73545445 1.26e-04 40_[-3(9.58e-08)]_44 chr2:217841976-217842076 5.04e-01 100 chr11:64917149-64917249 1.43e-02 77_[-3(2.45e-05)]_7 chr7:149872575-149872675 5.37e-01 100 chr2:85420746-85420846 2.24e-01 100 chr21:39445737-39445837 8.84e-02 100 chr1:27608583-27608683 9.42e-01 100 chr4:74532143-74532243 2.72e-01 100 chr19:45405262-45405362 4.17e-01 100 chr9:128043276-128043376 6.46e-01 100 chr5:10487574-10487674 3.83e-09 49_[+3(3.40e-06)]_10_[+1(3.64e-09)]_\ 3 chr6:158869131-158869231 3.76e-01 100 chr11:35063331-35063431 1.19e-01 100 chr5:57693019-57693119 3.09e-02 61_[-1(6.05e-05)]_17 chr14:22956774-22956874 6.02e-01 100 chr8:104585706-104585806 1.77e-01 100 chrX:30889191-30889291 1.73e-01 100 chr6:146883666-146883766 1.22e-01 100 chr9:34665718-34665818 1.69e-01 100 chr16:11742798-11742898 9.74e-01 100 chr15:88467084-88467184 2.69e-01 100 chr5:138538866-138538966 2.95e-01 100 chr11:9652168-9652268 9.56e-02 100 chr1:108863101-108863201 1.70e-04 51_[-1(1.77e-07)]_27 chr1:28642795-28642895 5.86e-01 100 chr16:3163384-3163484 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chr3:40351710-40351810 1.01e-22 8_[-1(5.03e-09)]_6_[+2(9.51e-22)]_\ 21 chr20:47318444-47318544 1.45e-01 100 chr1:182794786-182794886 1.38e-01 100 chr17:59844222-59844322 4.02e-08 33_[+3(3.40e-06)]_10_[+1(6.61e-08)]_\ 19 chr11:64240604-64240704 7.50e-01 100 chr8:127963580-127963680 3.87e-03 27_[-3(2.92e-05)]_57 chr1:160768118-160768218 6.90e-01 100 chr5:69046763-69046863 4.80e-04 25_[+1(1.90e-07)]_53 chrUn_KI270442v1:390961- 3.37e-01 100 chr11:43944674-43944774 3.81e-01 100 chr16:12803396-12803496 1.44e-03 4_[+1(9.91e-06)]_74 chr1:41882031-41882131 2.58e-01 100 chr14:103010870-10301097 8.45e-02 41_[-3(7.79e-05)]_43 chr7:5833746-5833846 2.81e-02 100 chr19:34926735-34926835 6.84e-01 100 chr9:96683464-96683564 1.86e-05 20_[-1(1.65e-08)]_58 chr4:38802459-38802559 5.43e-01 100 chr11:112074140-11207424 4.15e-01 100 chr18:67433904-67434004 1.12e-04 59_[+3(2.95e-08)]_25 chr3:17313707-17313807 4.99e-02 11_[-3(1.87e-05)]_73 chr4:40200746-40200846 1.51e-02 58_[-3(2.45e-05)]_26 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82_[+3(1.56e-07)]_2 chr1:2556757-2556857 9.86e-02 35_[-1(4.45e-05)]_43 chr19:35628833-35628933 5.92e-01 100 chr8:19067603-19067703 7.61e-02 100 chr2:86105996-86106096 7.69e-01 100 chr5:151251053-151251153 2.16e-01 100 chr3:187041589-187041689 5.62e-01 100 chr2:216681603-216681703 3.34e-03 2_[-3(2.45e-05)]_82 chr3:141652255-141652355 9.10e-02 100 chr12:108629786-10862988 2.15e-01 100 chr16:24002604-24002704 3.61e-01 100 chr1:39738677-39738777 6.22e-01 100 chr10:30349153-30349253 3.67e-01 100 chr7:105106207-105106307 9.09e-01 100 chr1:21634060-21634160 3.55e-01 100 chr1:28351354-28351454 2.12e-03 74_[-1(5.18e-07)]_4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: indra ********************************************************************************