# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 16798 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:30 PST 2017) # negatives: 16798 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:31 PST 2017) # host: kali # when: Wed Nov 22 13:06:01 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.221 C 0.277 G 0.280 T 0.222 MOTIF CTTCCKS DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CTTCCKS SMGGAAG 4861 1309 3.4e-575 1.5e-570 # CTTCCGG CCGGAAG 2272 253 6.9e-434 3.1e-429 # CTTCCTG CAGGAAG 1296 405 3.4e-114 1.6e-109 # CTTCCGC GCGGAAG 981 249 6.6e-107 3.0e-102 # CTTCCTC GAGGAAG 848 444 4.9e-031 2.2e-026 letter-probability matrix: alength= 4 w= 7 nsites= 5787 E= 1.5e-570 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.611716 0.388284 0.000000 0.331605 0.668395 0.000000 MOTIF BTTATCW DREME-2 # Word RC Word Pos Neg P-value E-value # BEST BTTATCW WGATAAV 2509 771 1.4e-234 6.4e-230 # CTTATCT AGATAAG 912 131 6.2e-149 2.8e-144 # TTTATCT AGATAAA 544 161 1.0e-050 4.7e-046 # CTTATCA TGATAAG 483 156 8.2e-041 3.7e-036 # GTTATCT AGATAAC 332 111 2.8e-027 1.3e-022 # TTTATCA TGATAAA 310 137 5.5e-017 2.5e-012 # GTTATCA TGATAAC 238 98 5.2e-015 2.3e-010 letter-probability matrix: alength= 4 w= 7 nsites= 2917 E= 6.4e-230 0.000000 0.499829 0.199177 0.300994 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.360987 0.000000 0.000000 0.639013 MOTIF CGGAAVY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CGGAAVY RBTTCCG 1562 566 2.2e-114 1.0e-109 # CGGAAGT ACTTCCG 249 39 3.4e-039 1.5e-034 # CGGAAAC GTTTCCG 366 108 1.4e-034 6.2e-030 # CGGAAAT ATTTCCG 293 78 5.2e-031 2.3e-026 # CGGAACT AGTTCCG 282 102 3.8e-021 1.7e-016 # CGGAACC GGTTCCG 332 166 2.8e-014 1.3e-009 # CGGAAGC GCTTCCG 164 85 2.8e-007 1.3e-002 letter-probability matrix: alength= 4 w= 7 nsites= 1688 E= 1.0e-109 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.388033 0.366706 0.245261 0.000000 0.000000 0.506517 0.000000 0.493483 MOTIF CHCCRCCC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CHCCRCCC GGGYGGDG 2093 1032 4.4e-090 2.0e-085 # CCCCGCCC GGGCGGGG 1010 404 7.1e-063 3.2e-058 # CCCCACCC GGGTGGGG 436 192 1.8e-023 8.1e-019 # CTCCGCCC GGGCGGAG 391 186 2.4e-018 1.1e-013 # CACCGCCC GGGCGGTG 201 109 8.5e-008 3.8e-003 # CTCCACCC GGGTGGAG 189 123 1.0e-004 4.7e+000 # CACCACCC GGGTGGTG 118 84 9.8e-003 4.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 2466 E= 2.0e-085 0.000000 1.000000 0.000000 0.000000 0.128143 0.637470 0.000000 0.234388 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.298054 0.000000 0.701946 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACGTSAY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACGTSAY RTSACGT 646 165 8.4e-070 3.7e-065 # ACGTGAC GTCACGT 255 44 7.0e-038 3.1e-033 # ACGTCAC GTGACGT 245 56 7.0e-030 3.1e-025 # ACGTCAT ATGACGT 170 40 1.1e-020 4.9e-016 # ACGTGAT ATCACGT 77 28 8.9e-007 4.0e-002 letter-probability matrix: alength= 4 w= 7 nsites= 696 E= 3.7e-065 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538793 0.461207 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.676724 0.000000 0.323276 MOTIF CHGGRA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CHGGRA TYCCDG 6428 4988 4.0e-062 1.8e-057 # CTGGGA TCCCAG 2061 1358 2.7e-037 1.2e-032 # CCGGGA TCCCGG 1363 942 5.0e-020 2.3e-015 # CAGGAA TTCCTG 1228 833 1.3e-019 5.9e-015 # CCGGAA TTCCGG 441 262 4.5e-012 2.0e-007 # CTGGAA TTCCAG 1310 1046 9.3e-009 4.2e-004 # CAGGGA TCCCTG 1476 1325 1.5e-003 6.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 8215 E= 1.8e-057 0.000000 1.000000 0.000000 0.000000 0.338527 0.230189 0.000000 0.431284 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.362995 0.000000 0.637005 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARATGGMG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ARATGGMG CKCCATYT 571 154 1.3e-058 5.9e-054 # AGATGGCG CGCCATCT 166 20 2.9e-030 1.3e-025 # AGATGGAG CTCCATCT 214 66 7.6e-020 3.4e-015 # AAATGGCG CGCCATTT 71 13 3.7e-011 1.7e-006 # AAATGGAG CTCCATTT 125 55 8.9e-008 3.9e-003 letter-probability matrix: alength= 4 w= 8 nsites= 596 E= 5.9e-054 1.000000 0.000000 0.000000 0.000000 0.337248 0.000000 0.662752 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.590604 0.409396 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TGACTCAB DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 530 141 3.5e-055 1.6e-050 # TGACTCAT ATGAGTCA 176 36 9.1e-024 4.0e-019 # TGACTCAG CTGAGTCA 215 56 1.3e-023 5.9e-019 # TGACTCAC GTGAGTCA 151 49 1.2e-013 5.2e-009 letter-probability matrix: alength= 4 w= 8 nsites= 553 E= 1.6e-050 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.274864 0.401447 0.323689 MOTIF CMGCCKCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CMGCCKCC GGMGGCKG 1369 716 3.0e-050 1.3e-045 # CCGCCGCC GGCGGCGG 623 305 8.2e-027 3.6e-022 # CCGCCTCC GGAGGCGG 361 180 1.7e-015 7.6e-011 # CAGCCTCC GGAGGCTG 310 148 9.7e-015 4.3e-010 # CAGCCGCC GGCGGCTG 210 129 5.8e-006 2.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 1538 E= 1.3e-045 0.000000 1.000000 0.000000 0.000000 0.329649 0.670351 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.566320 0.433680 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARATAH DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ARATAH DTATYT 3038 2126 1.1e-043 4.8e-039 # AAATAA TTATTT 1114 748 1.3e-018 5.6e-014 # AAATAT ATATTT 746 452 2.3e-018 1.0e-013 # AGATAA TTATCT 287 128 1.4e-015 6.1e-011 # AAATAC GTATTT 584 423 1.5e-007 6.4e-003 # AGATAC GTATCT 384 302 8.8e-004 3.9e+001 # AGATAT ATATCT 464 374 9.2e-004 4.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 3745 E= 4.8e-039 1.000000 0.000000 0.000000 0.000000 0.694793 0.000000 0.305207 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.408011 0.265421 0.000000 0.326569 MOTIF RACYACA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST RACYACA TGTRGTY 1065 537 1.7e-042 7.4e-038 # GACTACA TGTAGTC 253 80 1.5e-022 6.4e-018 # AACCACA TGTGGTT 366 186 4.6e-015 2.0e-010 # AACTACA TGTAGTT 229 110 3.8e-011 1.7e-006 # GACCACA TGTGGTC 248 167 3.7e-005 1.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 1140 E= 7.4e-038 0.543860 0.000000 0.456140 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555263 0.000000 0.444737 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATATADGG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ATATADGG CCHTATAT 247 41 1.3e-037 5.7e-033 # ATATAGGG CCCTATAT 134 10 3.0e-029 1.3e-024 # ATATAAGG CCTTATAT 72 23 2.3e-007 1.0e-002 # ATATATGG CCATATAT 42 9 1.7e-006 7.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 249 E= 5.7e-033 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.297189 0.000000 0.534137 0.168675 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGGAGGRR DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GGGAGGRR YYCCTCCC 1100 596 7.8e-037 3.4e-032 # GGGAGGGG CCCCTCCC 452 267 1.5e-012 6.7e-008 # GGGAGGAG CTCCTCCC 308 163 8.2e-012 3.6e-007 # GGGAGGGA TCCCTCCC 264 140 2.8e-010 1.2e-005 # GGGAGGAA TTCCTCCC 140 56 7.8e-010 3.4e-005 letter-probability matrix: alength= 4 w= 8 nsites= 1177 E= 3.4e-032 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.384877 0.000000 0.615123 0.000000 0.343246 0.000000 0.656754 0.000000 MOTIF CACASMC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CACASMC GKSTGTG 1337 839 9.5e-029 4.1e-024 # CACACAC GTGTGTG 400 208 1.6e-015 7.0e-011 # CACAGCC GGCTGTG 456 267 5.9e-013 2.6e-008 # CACACCC GGGTGTG 342 233 2.6e-006 1.1e-001 # CACAGAC GTCTGTG 246 187 2.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1657 E= 4.1e-024 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.571515 0.428485 0.000000 0.518407 0.481593 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAAAAAA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AAAAAAAA TTTTTTTT 479 199 2.3e-028 1.0e-023 # AAAAAAAA TTTTTTTT 479 199 2.3e-028 1.0e-023 letter-probability matrix: alength= 4 w= 8 nsites= 624 E= 1.0e-023 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGCWGC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CAGCWGC GCWGCTG 1113 708 7.4e-023 3.2e-018 # CAGCTGC GCAGCTG 574 320 3.0e-018 1.3e-013 # CAGCAGC GCTGCTG 630 432 3.6e-010 1.6e-005 letter-probability matrix: alength= 4 w= 7 nsites= 1169 E= 3.2e-018 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.522669 0.000000 0.000000 0.477331 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCCATGRC DREME-17 # Word RC Word Pos Neg P-value E-value # BEST GCCATGRC GYCATGGC 237 71 1.6e-022 6.9e-018 # GCCATGGC GCCATGGC 148 37 2.6e-017 1.1e-012 # GCCATGAC GTCATGGC 117 34 3.2e-012 1.4e-007 letter-probability matrix: alength= 4 w= 8 nsites= 268 E= 6.9e-018 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.444030 0.000000 0.555970 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GYCACAK DREME-18 # Word RC Word Pos Neg P-value E-value # BEST GYCACAK MTGTGRC 973 610 4.0e-021 1.7e-016 # GTCACAT ATGTGAC 214 107 9.9e-010 4.3e-005 # GCCACAG CTGTGGC 369 238 4.5e-008 2.0e-003 # GTCACAG CTGTGAC 216 134 6.2e-006 2.7e-001 # GCCACAT ATGTGGC 192 143 4.2e-003 1.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1001 E= 1.7e-016 0.000000 0.000000 1.000000 0.000000 0.000000 0.564436 0.000000 0.435564 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.590410 0.409590 MOTIF GTTTACAD DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GTTTACAD HTGTAAAC 228 75 1.5e-019 6.4e-015 # GTTTACAA TTGTAAAC 107 32 5.5e-011 2.4e-006 # GTTTACAG CTGTAAAC 80 21 1.3e-009 5.6e-005 # GTTTACAT ATGTAAAC 42 22 8.4e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 229 E= 6.4e-015 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.467249 0.000000 0.349345 0.183406 MOTIF GCGCABGC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST GCGCABGC GCVTGCGC 479 244 3.5e-019 1.5e-014 # GCGCATGC GCATGCGC 104 23 7.7e-014 3.3e-009 # GCGCACGC GCGTGCGC 187 102 2.9e-007 1.3e-002 # GCGCAGGC GCCTGCGC 210 124 1.3e-006 5.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 514 E= 1.5e-014 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.381323 0.418288 0.200389 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGGAAR DREME-21 # Word RC Word Pos Neg P-value E-value # BEST AGGAAR YTTCCT 1844 1366 3.7e-019 1.6e-014 # AGGAAA TTTCCT 1127 819 3.4e-013 1.5e-008 # AGGAAG CTTCCT 794 595 2.7e-008 1.2e-003 letter-probability matrix: alength= 4 w= 6 nsites= 1988 E= 1.6e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.586016 0.000000 0.413984 0.000000 MOTIF AAVATGGC DREME-22 # Word RC Word Pos Neg P-value E-value # BEST AAVATGGC GCCATBTT 265 102 2.6e-018 1.1e-013 # AAGATGGC GCCATCTT 105 35 1.2e-009 5.1e-005 # AACATGGC GCCATGTT 85 31 2.6e-007 1.1e-002 # AAAATGGC GCCATTTT 81 36 1.9e-005 8.1e-001 letter-probability matrix: alength= 4 w= 8 nsites= 274 E= 1.1e-013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.299270 0.313869 0.386861 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTGGGAGK DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GTGGGAGK MCTCCCAC 273 109 7.9e-018 3.4e-013 # GTGGGAGT ACTCCCAC 135 48 4.0e-011 1.7e-006 # GTGGGAGG CCTCCCAC 138 61 2.2e-008 9.7e-004 letter-probability matrix: alength= 4 w= 8 nsites= 274 E= 3.4e-013 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.507299 0.492701 MOTIF CACGTGGB DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CACGTGGB VCCACGTG 164 46 4.0e-017 1.7e-012 # CACGTGGG CCCACGTG 71 20 3.5e-008 1.5e-003 # CACGTGGT ACCACGTG 44 7 5.9e-008 2.5e-003 # CACGTGGC GCCACGTG 70 23 5.3e-007 2.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 166 E= 1.7e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.373494 0.391566 0.234940 MOTIF ABATCCGG DREME-25 # Word RC Word Pos Neg P-value E-value # BEST ABATCCGG CCGGATVT 130 30 2.1e-016 9.0e-012 # ACATCCGG CCGGATGT 84 13 3.2e-014 1.4e-009 # AGATCCGG CCGGATCT 36 16 3.9e-003 1.7e+002 # ATATCCGG CCGGATAT 10 1 5.9e-003 2.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 142 E= 9.0e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.654930 0.274648 0.070423 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TACAGGCR DREME-26 # Word RC Word Pos Neg P-value E-value # BEST TACAGGCR YGCCTGTA 149 41 5.6e-016 2.4e-011 # TACAGGCA TGCCTGTA 90 23 7.0e-011 3.0e-006 # TACAGGCG CGCCTGTA 59 19 3.1e-006 1.3e-001 letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 2.4e-011 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.604027 0.000000 0.395973 0.000000 MOTIF GCCACYGY DREME-27 # Word RC Word Pos Neg P-value E-value # BEST GCCACYGY RCRGTGGC 424 225 1.3e-015 5.6e-011 # GCCACTGC GCAGTGGC 174 86 2.3e-008 9.8e-004 # GCCACCGC GCGGTGGC 134 72 8.8e-006 3.8e-001 # GCCACCGT ACGGTGGC 45 21 2.1e-003 9.1e+001 # GCCACTGT ACAGTGGC 74 46 6.6e-003 2.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 427 E= 5.6e-011 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.416862 0.000000 0.583138 0.000000 0.000000 1.000000 0.000000 0.000000 0.721311 0.000000 0.278689 MOTIF GAKGTCA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST GAKGTCA TGACMTC 509 293 5.4e-015 2.3e-010 # GAGGTCA TGACCTC 334 180 3.7e-012 1.6e-007 # GATGTCA TGACATC 178 116 1.7e-004 7.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 523 E= 2.3e-010 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.644359 0.355641 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCCAGSCY DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CCCAGSCY RGSCTGGG 759 504 1.3e-013 5.8e-009 # CCCAGGCT AGCCTGGG 182 102 1.1e-006 4.6e-002 # CCCAGCCC GGGCTGGG 276 176 1.3e-006 5.4e-002 # CCCAGCCT AGGCTGGG 132 87 1.4e-003 5.9e+001 # CCCAGGCC GGCCTGGG 201 153 6.0e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 787 E= 5.8e-009 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.512071 0.487929 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.616264 0.000000 0.383736 MOTIF AGAWA DREME-30 # Word RC Word Pos Neg P-value E-value # BEST AGAWA TWTCT 4404 3867 5.6e-012 2.4e-007 # AGAAA TTTCT 3932 3517 2.7e-008 1.2e-003 # AGATA TATCT 685 529 2.9e-006 1.2e-001 letter-probability matrix: alength= 4 w= 5 nsites= 5524 E= 2.4e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.873280 0.000000 0.000000 0.126720 1.000000 0.000000 0.000000 0.000000 MOTIF GTCTMAAA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST GTCTMAAA TTTKAGAC 185 76 4.9e-012 2.1e-007 # GTCTAAAA TTTTAGAC 112 32 6.0e-012 2.6e-007 # GTCTCAAA TTTGAGAC 73 45 6.2e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 185 E= 2.1e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.605405 0.394595 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGCAGTRA DREME-32 # Word RC Word Pos Neg P-value E-value # BEST TGCAGTRA TYACTGCA 197 85 8.7e-012 3.7e-007 # TGCAGTGA TCACTGCA 143 55 1.4e-010 6.1e-006 # TGCAGTAA TTACTGCA 54 30 5.8e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 198 E= 3.7e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.272727 0.000000 0.727273 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCTACTA DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CTCTACTA TAGTAGAG 70 12 2.0e-011 8.3e-007 # CTCTACTA TAGTAGAG 70 12 2.0e-011 8.3e-007 letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 8.3e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGCNGAG DREME-34 # Word RC Word Pos Neg P-value E-value # BEST AGGCNGAG CTCNGCCT 535 347 7.6e-011 3.2e-006 # AGGCCGAG CTCGGCCT 141 73 1.8e-006 7.7e-002 # AGGCTGAG CTCAGCCT 134 86 7.1e-004 3.0e+001 # AGGCGGAG CTCCGCCT 104 70 6.0e-003 2.5e+002 # AGGCAGAG CTCTGCCT 162 122 1.0e-002 4.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 544 E= 3.2e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.297794 0.264706 0.191176 0.246324 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCGCGCGC DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GCGCGCGC GCGCGCGC 337 192 1.1e-010 4.6e-006 # GCGCGCGC GCGCGCGC 337 192 1.1e-010 4.6e-006 letter-probability matrix: alength= 4 w= 8 nsites= 377 E= 4.6e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGGCGGGA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST RGGCGGGA TCCCGCCY 358 210 2.0e-010 8.4e-006 # GGGCGGGA TCCCGCCC 258 142 2.9e-009 1.2e-004 # AGGCGGGA TCCCGCCT 103 69 5.7e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 369 E= 8.4e-006 0.281843 0.000000 0.718157 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTTWWAAA DREME-37 # Word RC Word Pos Neg P-value E-value # BEST TTTWWAAA TTTWWAAA 238 123 5.9e-010 2.5e-005 # TTTAAAAA TTTTTAAA 168 84 5.9e-008 2.5e-003 # TTTTAAAA TTTTAAAA 104 51 1.2e-005 5.1e-001 # TTTATAAA TTTATAAA 40 17 1.6e-003 6.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 245 E= 2.5e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.387755 0.000000 0.000000 0.612245 0.461224 0.000000 0.000000 0.538776 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCTGWCA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CTCTGWCA TGWCAGAG 209 104 1.3e-009 5.3e-005 # CTCTGACA TGTCAGAG 113 49 2.5e-007 1.1e-002 # CTCTGTCA TGACAGAG 97 57 7.7e-004 3.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 210 E= 5.3e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.538095 0.000000 0.000000 0.461905 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACACAGH DREME-39 # Word RC Word Pos Neg P-value E-value # BEST ACACAGH DCTGTGT 583 399 1.4e-009 5.9e-005 # ACACAGC GCTGTGT 209 134 2.8e-005 1.2e+000 # ACACAGT ACTGTGT 202 133 9.0e-005 3.8e+000 # ACACAGA TCTGTGT 182 134 3.9e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 599 E= 5.9e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.307179 0.352254 0.000000 0.340568 MOTIF CABTTCC DREME-40 # Word RC Word Pos Neg P-value E-value # BEST CABTTCC GGAAVTG 506 345 1.3e-008 5.3e-004 # CACTTCC GGAAGTG 188 117 2.6e-005 1.1e+000 # CAGTTCC GGAACTG 183 131 1.9e-003 8.0e+001 # CATTTCC GGAAATG 143 99 2.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 515 E= 5.3e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.366990 0.357282 0.275728 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGAYGCAA DREME-41 # Word RC Word Pos Neg P-value E-value # BEST TGAYGCAA TTGCRTCA 165 80 2.7e-008 1.1e-003 # TGATGCAA TTGCATCA 121 60 3.2e-006 1.4e-001 # TGACGCAA TTGCGTCA 44 20 1.8e-003 7.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 170 E= 1.1e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.258824 0.000000 0.741176 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCWATCAG DREME-42 # Word RC Word Pos Neg P-value E-value # BEST CCWATCAG CTGATWGG 140 66 1.3e-007 5.3e-003 # CCTATCAG CTGATAGG 48 15 1.9e-005 7.8e-001 # CCAATCAG CTGATTGG 92 51 3.7e-004 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 151 E= 5.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.675497 0.000000 0.000000 0.324503 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAGAGCRA DREME-43 # Word RC Word Pos Neg P-value E-value # BEST CAGAGCRA TYGCTCTG 194 105 1.3e-007 5.6e-003 # CAGAGCAA TTGCTCTG 129 66 3.6e-006 1.5e-001 # CAGAGCGA TCGCTCTG 65 40 9.3e-003 3.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 194 E= 5.6e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.664948 0.000000 0.335052 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCWCCTCC DREME-44 # Word RC Word Pos Neg P-value E-value # BEST CCWCCTCC GGAGGWGG 327 209 1.6e-007 6.7e-003 # CCTCCTCC GGAGGAGG 176 114 1.5e-004 6.5e+000 # CCACCTCC GGAGGTGG 156 98 1.6e-004 6.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 341 E= 6.7e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.000000 0.545455 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGTGCTGA DREME-45 # Word RC Word Pos Neg P-value E-value # BEST GGTGCTGA TCAGCACC 130 60 1.9e-007 8.2e-003 # GGTGCTGA TCAGCACC 130 60 1.9e-007 8.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 142 E= 8.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGAAGCCR DREME-46 # Word RC Word Pos Neg P-value E-value # BEST AGAAGCCR YGGCTTCT 180 97 3.1e-007 1.3e-002 # AGAAGCCA TGGCTTCT 107 54 1.7e-005 7.2e-001 # AGAAGCCG CGGCTTCT 73 43 3.4e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 1.3e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.591160 0.000000 0.408840 0.000000 MOTIF CCACGCCC DREME-47 # Word RC Word Pos Neg P-value E-value # BEST CCACGCCC GGGCGTGG 184 100 3.2e-007 1.3e-002 # CCACGCCC GGGCGTGG 184 100 3.2e-007 1.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 187 E= 1.3e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACCRTGA DREME-48 # Word RC Word Pos Neg P-value E-value # BEST CACCRTGA TCAYGGTG 97 40 5.8e-007 2.5e-002 # CACCATGA TCATGGTG 76 33 2.3e-005 9.6e-001 # CACCGTGA TCACGGTG 21 7 6.3e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 2.5e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.000000 0.214286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4713.32 seconds