# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 3981 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:30 PST 2017) # negatives: 3981 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELK1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:30 PST 2017) # host: kali # when: Wed Nov 22 13:04:56 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.192 C 0.307 G 0.310 T 0.192 MOTIF RCTTCCGB DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RCTTCCGB VCGGAAGY 1494 112 7.6e-375 3.3e-370 # ACTTCCGG CCGGAAGT 838 12 5.2e-251 2.3e-246 # GCTTCCGG CCGGAAGC 408 42 1.4e-080 6.2e-076 # ACTTCCGC GCGGAAGT 249 18 5.9e-055 2.6e-050 # ACTTCCGT ACGGAAGT 71 2 2.1e-019 9.4e-015 # GCTTCCGC GCGGAAGC 119 28 4.4e-015 1.9e-010 # GCTTCCGT ACGGAAGC 49 12 9.0e-007 4.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 1781 E= 3.3e-370 0.680517 0.000000 0.319483 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.206064 0.727120 0.066816 MOTIF CMGGAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CMGGAA TTCCKG 1136 455 2.2e-083 9.6e-079 # CCGGAA TTCCGG 676 211 2.2e-064 9.7e-060 # CAGGAA TTCCTG 521 252 6.6e-025 2.9e-020 letter-probability matrix: alength= 4 w= 6 nsites= 1338 E= 9.6e-079 0.000000 1.000000 0.000000 0.000000 0.433483 0.566517 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGGCGGRR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGGCGGRR YYCCGCCC 562 209 3.2e-042 1.4e-037 # GGGCGGGG CCCCGCCC 299 99 6.9e-026 3.0e-021 # GGGCGGAG CTCCGCCC 143 56 1.8e-010 7.7e-006 # GGGCGGGA TCCCGCCC 105 36 1.9e-009 8.1e-005 # GGGCGGAA TTCCGCCC 65 24 7.2e-006 3.1e-001 letter-probability matrix: alength= 4 w= 8 nsites= 625 E= 1.4e-037 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.328000 0.000000 0.672000 0.000000 0.272000 0.000000 0.728000 0.000000 MOTIF ACGTSAC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACGTSAC GTSACGT 169 19 3.5e-032 1.5e-027 # ACGTCAC GTGACGT 104 7 7.7e-024 3.3e-019 # ACGTGAC GTCACGT 69 12 2.9e-011 1.2e-006 letter-probability matrix: alength= 4 w= 7 nsites= 177 E= 1.5e-027 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.610169 0.389831 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ANATGGCG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ANATGGCG CGCCATNT 125 14 4.3e-024 1.9e-019 # AGATGGCG CGCCATCT 72 4 1.3e-017 5.8e-013 # AAATGGCG CGCCATTT 27 6 1.6e-004 6.8e+000 # ATATGGCG CGCCATAT 9 0 1.9e-003 8.4e+001 # ACATGGCG CGCCATGT 18 4 2.1e-003 9.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 1.9e-019 1.000000 0.000000 0.000000 0.000000 0.212598 0.141732 0.574803 0.070866 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AWATAWGG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AWATAWGG CCWTATWT 100 8 6.9e-022 3.0e-017 # ATATAAGG CCTTATAT 33 1 1.9e-009 8.2e-005 # AAATAAGG CCTTATTT 29 2 2.2e-007 9.5e-003 # AAATATGG CCATATTT 25 4 5.0e-005 2.2e+000 # ATATATGG CCATATAT 14 1 4.8e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 3.0e-017 1.000000 0.000000 0.000000 0.000000 0.533981 0.000000 0.000000 0.466019 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.611650 0.000000 0.000000 0.388350 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RACTACAW DREME-7 # Word RC Word Pos Neg P-value E-value # BEST RACTACAW WTGTAGTY 104 10 2.1e-021 8.9e-017 # AACTACAA TTGTAGTT 40 3 1.4e-009 6.0e-005 # GACTACAT ATGTAGTC 20 0 9.3e-007 4.0e-002 # GACTACAA TTGTAGTC 29 5 1.9e-005 8.0e-001 # AACTACAT ATGTAGTT 16 2 6.5e-004 2.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 8.9e-017 0.533333 0.000000 0.466667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.657143 0.000000 0.000000 0.342857 MOTIF KSTGGGA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST KSTGGGA TCCCASM 531 287 8.6e-020 3.7e-015 # GCTGGGA TCCCAGC 202 110 6.1e-008 2.6e-003 # TCTGGGA TCCCAGA 137 69 9.2e-007 3.9e-002 # GGTGGGA TCCCACC 137 70 1.4e-006 6.0e-002 # TGTGGGA TCCCACA 76 45 2.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 572 E= 3.7e-015 0.000000 0.000000 0.608392 0.391608 0.000000 0.620629 0.379371 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCCATGRC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GCCATGRC GYCATGGC 88 9 6.8e-018 2.9e-013 # GCCATGGC GCCATGGC 64 4 2.3e-015 1.0e-010 # GCCATGAC GTCATGGC 37 5 2.1e-007 8.9e-003 letter-probability matrix: alength= 4 w= 8 nsites= 101 E= 2.9e-013 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.366337 0.000000 0.633663 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGAARTR DREME-10 # Word RC Word Pos Neg P-value E-value # BEST GGAARTR YAYTTCC 266 113 2.6e-016 1.1e-011 # GGAAGTG CACTTCC 125 55 7.0e-008 3.0e-003 # GGAAATA TATTTCC 42 13 5.4e-005 2.3e+000 # GGAAATG CATTTCC 70 32 9.7e-005 4.2e+000 # GGAAGTA TACTTCC 34 15 4.6e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 276 E= 1.1e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.409420 0.000000 0.590580 0.000000 0.000000 0.000000 0.000000 1.000000 0.271739 0.000000 0.728261 0.000000 MOTIF GGGAGGRR DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GGGAGGRR YYCCTCCC 377 199 6.1e-015 2.6e-010 # GGGAGGGG CCCCTCCC 147 80 3.8e-006 1.6e-001 # GGGAGGAA TTCCTCCC 76 30 4.0e-006 1.7e-001 # GGGAGGAG CTCCTCCC 100 53 7.8e-005 3.3e+000 # GGGAGGGA TCCCTCCC 82 47 1.2e-003 5.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 403 E= 2.6e-010 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.449132 0.000000 0.550868 0.000000 0.389578 0.000000 0.610422 0.000000 MOTIF ACCATAKA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ACCATAKA TMTATGGT 58 4 1.1e-013 4.6e-009 # ACCATATA TATATGGT 43 1 2.3e-012 9.8e-008 # ACCATAGA TCTATGGT 15 3 3.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.6e-009 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.258621 0.741379 1.000000 0.000000 0.000000 0.000000 MOTIF CGCADGCG DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CGCADGCG CGCHTGCG 175 65 1.8e-013 7.6e-009 # CGCATGCG CGCATGCG 47 3 1.6e-011 7.0e-007 # CGCAGGCG CGCCTGCG 95 45 1.2e-005 5.2e-001 # CGCAAGCG CGCTTGCG 36 18 9.7e-003 4.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 7.6e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.198895 0.000000 0.541436 0.259669 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCGCCTYC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CCGCCTYC GRAGGCGG 180 70 5.5e-013 2.3e-008 # CCGCCTCC GGAGGCGG 128 50 1.5e-009 6.5e-005 # CCGCCTTC GAAGGCGG 52 21 1.7e-004 7.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 180 E= 2.3e-008 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.711111 0.000000 0.288889 0.000000 1.000000 0.000000 0.000000 MOTIF GKTTACA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST GKTTACA TGTAAMC 74 16 1.8e-010 7.6e-006 # GTTTACA TGTAAAC 56 11 9.5e-009 4.0e-004 # GGTTACA TGTAACC 18 5 5.3e-003 2.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 74 E= 7.6e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.243243 0.756757 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCMGCYGC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GCMGCYGC GCRGCKGC 327 196 1.7e-009 7.3e-005 # GCAGCCGC GCGGCTGC 97 49 3.8e-005 1.6e+000 # GCCGCCGC GCGGCGGC 153 97 1.9e-004 8.3e+000 # GCCGCTGC GCAGCGGC 82 47 1.2e-003 5.1e+001 # GCAGCTGC GCAGCTGC 37 15 1.5e-003 6.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 358 E= 7.3e-005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.365922 0.634078 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.681564 0.000000 0.318436 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACGTCAK DREME-17 # Word RC Word Pos Neg P-value E-value # BEST ACGTCAK MTGACGT 88 27 3.9e-009 1.7e-004 # ACGTCAT ATGACGT 42 10 4.3e-006 1.8e-001 # ACGTCAG CTGACGT 50 17 3.1e-005 1.3e+000 letter-probability matrix: alength= 4 w= 7 nsites= 89 E= 1.7e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.550562 0.449438 MOTIF CAGAGSC DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CAGAGSC GSCTCTG 291 177 3.2e-008 1.4e-003 # CAGAGGC GCCTCTG 154 90 1.9e-005 8.1e-001 # CAGAGCC GGCTCTG 144 90 2.1e-004 8.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 302 E= 1.4e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.480132 0.519868 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CATGRTG DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CATGRTG CAYCATG 86 32 2.9e-007 1.2e-002 # CATGGTG CACCATG 53 21 1.2e-004 5.1e+000 # CATGATG CATCATG 33 11 6.1e-004 2.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 88 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATTGGCYG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST ATTGGCYG CRGCCAAT 65 20 4.5e-007 1.9e-002 # ATTGGCTG CAGCCAAT 41 11 1.7e-005 7.2e-001 # ATTGGCCG CGGCCAAT 24 9 6.7e-003 2.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.9e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.378788 0.000000 0.621212 0.000000 0.000000 1.000000 0.000000 MOTIF ACATCCGG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST ACATCCGG CCGGATGT 30 3 6.7e-007 2.8e-002 # ACATCCGG CCGGATGT 30 3 6.7e-007 2.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.8e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGAGRAA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST AGAGRAA TTYCTCT 179 100 8.6e-007 3.7e-002 # AGAGGAA TTCCTCT 109 54 8.1e-006 3.4e-001 # AGAGAAA TTTCTCT 75 47 6.7e-003 2.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 186 E= 3.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.408602 0.000000 0.591398 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 588.49 seconds