# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELF1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELF1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELF1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 17409 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELF1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:30 PST 2017) # negatives: 17409 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/ELF1-Antibody.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:31 PST 2017) # host: kali # when: Wed Nov 22 13:04:39 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.221 C 0.276 G 0.281 T 0.222 MOTIF SMGGAAR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST SMGGAAR YTTCCKS 9896 2741 7.1e-1447 3.2e-1442 # CCGGAAG CTTCCGG 2899 259 1.0e-611 4.6e-607 # CAGGAAG CTTCCTG 3405 480 4.5e-601 2.0e-596 # GCGGAAG CTTCCGC 1392 291 3.1e-180 1.4e-175 # GAGGAAG CTTCCTC 1592 715 1.3e-081 6.1e-077 # CCGGAAA TTTCCGG 721 193 2.2e-074 9.9e-070 # CAGGAAA TTTCCTG 859 348 2.8e-052 1.3e-047 # GCGGAAA TTTCCGC 354 177 4.0e-015 1.8e-010 # GAGGAAA TTTCCTC 716 514 2.5e-009 1.1e-004 letter-probability matrix: alength= 4 w= 7 nsites= 12658 E= 3.2e-1442 0.000000 0.662506 0.337494 0.000000 0.555617 0.444383 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.213778 0.000000 0.786222 0.000000 MOTIF GGAARTR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGAARTR YAYTTCC 1642 654 3.6e-104 1.6e-099 # GGAAGTG CACTTCC 829 283 7.7e-065 3.4e-060 # GGAAATG CATTTCC 417 162 1.3e-027 5.9e-023 # GGAAGTA TACTTCC 277 124 5.4e-015 2.4e-010 # GGAAATA TATTTCC 176 98 1.3e-006 5.8e-002 letter-probability matrix: alength= 4 w= 7 nsites= 1744 E= 1.6e-099 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.343463 0.000000 0.656537 0.000000 0.000000 0.000000 0.000000 1.000000 0.259748 0.000000 0.740252 0.000000 MOTIF GGAYTACA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGAYTACA TGTARTCC 437 50 1.9e-079 8.2e-075 # GGATTACA TGTAATCC 278 15 1.3e-064 5.8e-060 # GGACTACA TGTAGTCC 159 35 1.8e-020 7.9e-016 letter-probability matrix: alength= 4 w= 8 nsites= 438 E= 8.2e-075 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.365297 0.000000 0.634703 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CMGCCKCC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CMGCCKCC GGMGGCKG 1282 552 1.5e-070 6.5e-066 # CAGCCTCC GGAGGCTG 523 188 2.2e-038 9.7e-034 # CCGCCTCC GGAGGCGG 385 154 1.8e-024 7.9e-020 # CCGCCGCC GGCGGCGG 294 132 9.8e-016 4.3e-011 # CAGCCGCC GGCGGCTG 193 98 1.2e-008 5.3e-004 letter-probability matrix: alength= 4 w= 8 nsites= 1385 E= 6.5e-066 0.000000 1.000000 0.000000 0.000000 0.515523 0.484477 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.342238 0.657762 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CYCCDCCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CYCCDCCC GGGHGGRG 2429 1446 9.4e-064 4.2e-059 # CCCCGCCC GGGCGGGG 616 267 1.4e-033 6.2e-029 # CCCCACCC GGGTGGGG 419 212 3.4e-017 1.5e-012 # CTCCGCCC GGGCGGAG 320 143 3.8e-017 1.7e-012 # CTCCTCCC GGGAGGAG 504 313 7.1e-012 3.1e-007 # CCCCTCCC GGGAGGGG 609 430 9.6e-009 4.2e-004 # CTCCACCC GGGTGGAG 248 174 1.7e-004 7.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 2764 E= 4.2e-059 0.000000 1.000000 0.000000 0.000000 0.000000 0.596961 0.000000 0.403039 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.237337 0.000000 0.349855 0.412808 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGTAGCTG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGTAGCTG CAGCTACT 276 34 6.2e-049 2.7e-044 # AGTAGCTG CAGCTACT 276 34 6.2e-049 2.7e-044 letter-probability matrix: alength= 4 w= 8 nsites= 276 E= 2.7e-044 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGGCDGGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGGCDGGA TCCHGCCT 702 272 6.3e-046 2.8e-041 # AGGCAGGA TCCTGCCT 351 104 4.6e-033 2.1e-028 # AGGCTGGA TCCAGCCT 268 114 7.3e-016 3.2e-011 # AGGCGGGA TCCCGCCT 124 55 1.3e-007 5.5e-003 letter-probability matrix: alength= 4 w= 8 nsites= 745 E= 2.8e-041 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.473826 0.000000 0.166443 0.359732 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CMGGAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CMGGAA TTCCKG 1352 739 3.2e-044 1.4e-039 # CCGGAA TTCCGG 636 260 2.8e-038 1.2e-033 # CAGGAA TTCCTG 737 481 4.2e-014 1.9e-009 letter-probability matrix: alength= 4 w= 6 nsites= 1425 E= 1.4e-039 0.000000 1.000000 0.000000 0.000000 0.534035 0.465965 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACGTSAY DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ACGTSAY RTSACGT 569 197 7.6e-044 3.4e-039 # ACGTGAC GTCACGT 224 66 9.8e-022 4.3e-017 # ACGTCAC GTGACGT 175 54 1.8e-016 7.7e-012 # ACGTCAT ATGACGT 125 47 1.1e-009 4.7e-005 # ACGTGAT ATCACGT 109 38 1.8e-009 8.0e-005 letter-probability matrix: alength= 4 w= 7 nsites= 608 E= 3.4e-039 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.470395 0.529605 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.643092 0.000000 0.356908 MOTIF RTGAGYCA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST RTGAGYCA TGRCTCAY 575 209 1.8e-041 8.1e-037 # GTGAGCCA TGGCTCAC 235 64 1.3e-024 5.8e-020 # ATGAGTCA TGACTCAT 131 42 3.4e-012 1.5e-007 # GTGAGTCA TGACTCAC 138 65 1.5e-007 6.7e-003 # ATGAGCCA TGGCTCAT 75 39 4.7e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 592 E= 8.1e-037 0.369932 0.000000 0.630068 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.523649 0.000000 0.476351 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARATAA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ARATAA TTATYT 1564 932 6.1e-040 2.7e-035 # AGATAA TTATCT 802 428 5.1e-028 2.3e-023 # AAATAA TTATTT 836 535 5.3e-017 2.3e-012 letter-probability matrix: alength= 4 w= 6 nsites= 1766 E= 2.7e-035 1.000000 0.000000 0.000000 0.000000 0.527180 0.000000 0.472820 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AANATGGC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AANATGGC GCCATNTT 397 129 1.7e-033 7.5e-029 # AAGATGGC GCCATCTT 167 44 1.8e-018 8.1e-014 # AAAATGGC GCCATTTT 111 38 8.0e-010 3.5e-005 # AACATGGC GCCATGTT 91 35 3.0e-007 1.3e-002 # AATATGGC GCCATATT 32 12 1.8e-003 8.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 409 E= 7.5e-029 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.276284 0.224939 0.420538 0.078240 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCACTGCA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST TCACTGCA TGCAGTGA 290 72 1.0e-032 4.4e-028 # TCACTGCA TGCAGTGA 290 72 1.0e-032 4.4e-028 letter-probability matrix: alength= 4 w= 8 nsites= 297 E= 4.4e-028 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAWACAAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAWACAAA TTTGTWTT 451 177 2.7e-029 1.2e-024 # AATACAAA TTTGTATT 153 39 1.5e-017 6.7e-013 # AAAACAAA TTTGTTTT 303 139 1.5e-015 6.4e-011 letter-probability matrix: alength= 4 w= 8 nsites= 512 E= 1.2e-024 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.701172 0.000000 0.000000 0.298828 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATCTCGGC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST ATCTCGGC GCCGAGAT 157 23 3.9e-026 1.7e-021 # ATCTCGGC GCCGAGAT 157 23 3.9e-026 1.7e-021 letter-probability matrix: alength= 4 w= 8 nsites= 157 E= 1.7e-021 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGAGTCA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CTGAGTCA TGACTCAG 225 57 3.0e-025 1.3e-020 # CTGAGTCA TGACTCAG 225 57 3.0e-025 1.3e-020 letter-probability matrix: alength= 4 w= 8 nsites= 235 E= 1.3e-020 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF MGGAAR DREME-17 # Word RC Word Pos Neg P-value E-value # BEST MGGAAR YTTCCK 2360 1767 4.2e-023 1.8e-018 # AGGAAG CTTCCT 1020 729 5.0e-013 2.2e-008 # CGGAAG CTTCCG 497 315 5.5e-011 2.4e-006 # AGGAAA TTTCCT 763 598 2.8e-006 1.2e-001 # CGGAAA TTTCCG 288 232 7.5e-003 3.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 2857 E= 1.8e-018 0.717536 0.282464 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.397270 0.000000 0.602730 0.000000 MOTIF GSYGGGA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST GSYGGGA TCCCRSC 1856 1337 2.8e-022 1.2e-017 # GCTGGGA TCCCAGC 639 418 2.7e-012 1.2e-007 # GGCGGGA TCCCGCC 437 274 3.5e-010 1.5e-005 # GGTGGGA TCCCACC 470 381 1.1e-003 4.9e+001 # GCCGGGA TCCCGGC 385 320 7.4e-003 3.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1981 E= 1.2e-017 0.000000 0.000000 1.000000 0.000000 0.000000 0.531550 0.468450 0.000000 0.000000 0.424028 0.000000 0.575972 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCTACTAA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST TCTACTAA TTAGTAGA 117 15 3.9e-021 1.7e-016 # TCTACTAA TTAGTAGA 117 15 3.9e-021 1.7e-016 letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 1.7e-016 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATGTGAC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CATGTGAC GTCACATG 145 29 3.9e-020 1.7e-015 # CATGTGAC GTCACATG 145 29 3.9e-020 1.7e-015 letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 1.7e-015 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATCRCTTG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST ATCRCTTG CAAGYGAT 230 78 5.3e-019 2.3e-014 # ATCGCTTG CAAGCGAT 119 23 3.6e-017 1.6e-012 # ATCACTTG CAAGTGAT 111 55 7.9e-006 3.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 230 E= 2.3e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.482609 0.000000 0.517391 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCACHGCA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST CCACHGCA TGCDGTGG 418 206 3.8e-018 1.7e-013 # CCACTGCA TGCAGTGG 231 92 2.3e-015 1.0e-010 # CCACAGCA TGCTGTGG 122 77 8.5e-004 3.7e+001 # CCACCGCA TGCGGTGG 67 39 4.2e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 424 E= 1.7e-013 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.292453 0.160377 0.000000 0.547170 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCGCAKGC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GCGCAKGC GCMTGCGC 291 122 1.7e-017 7.2e-013 # GCGCATGC GCATGCGC 126 31 3.8e-015 1.7e-010 # GCGCAGGC GCCTGCGC 172 92 4.4e-007 1.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 299 E= 7.2e-013 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.578595 0.421405 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACGTGK DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CACGTGK MCACGTG 279 116 4.5e-017 2.0e-012 # CACGTGG CCACGTG 213 86 5.4e-014 2.3e-009 # CACGTGT ACACGTG 109 58 4.7e-005 2.0e+000 letter-probability matrix: alength= 4 w= 7 nsites= 286 E= 2.0e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.692308 0.307692 MOTIF GAGRCRGA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST GAGRCRGA TCYGYCTC 578 332 6.2e-017 2.7e-012 # GAGACAGA TCTGTCTC 210 111 1.5e-008 6.7e-004 # GAGGCAGA TCTGCCTC 207 124 2.7e-006 1.2e-001 # GAGACGGA TCCGTCTC 82 38 3.5e-005 1.5e+000 # GAGGCGGA TCCGCCTC 98 62 2.7e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 637 E= 2.7e-012 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.516484 0.000000 0.483516 0.000000 0.000000 1.000000 0.000000 0.000000 0.717425 0.000000 0.282575 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAKCCTGG DREME-26 # Word RC Word Pos Neg P-value E-value # BEST CAKCCTGG CCAGGMTG 412 215 8.4e-016 3.6e-011 # CAGCCTGG CCAGGCTG 304 146 2.6e-014 1.1e-009 # CATCCTGG CCAGGATG 108 69 2.0e-003 8.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 418 E= 3.6e-011 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.734450 0.265550 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAATAY DREME-27 # Word RC Word Pos Neg P-value E-value # BEST AAATAY RTATTT 817 536 3.3e-015 1.4e-010 # AAATAT ATATTT 454 275 1.1e-011 4.7e-007 # AAATAC GTATTT 389 275 4.5e-006 2.0e-001 letter-probability matrix: alength= 4 w= 6 nsites= 877 E= 1.4e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.454960 0.000000 0.545040 MOTIF ATTRGCCR DREME-28 # Word RC Word Pos Neg P-value E-value # BEST ATTRGCCR YGGCYAAT 252 100 1.0e-016 4.4e-012 # ATTAGCCA TGGCTAAT 68 21 2.9e-007 1.3e-002 # ATTAGCCG CGGCTAAT 47 13 6.0e-006 2.6e-001 # ATTGGCCA TGGCCAAT 92 48 1.2e-004 5.3e+000 # ATTGGCCG CGGCCAAT 45 18 4.4e-004 1.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 252 E= 4.4e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.456349 0.000000 0.543651 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.634921 0.000000 0.365079 0.000000 MOTIF GCYTCCCA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST GCYTCCCA TGGGARGC 306 148 3.4e-014 1.5e-009 # GCCTCCCA TGGGAGGC 200 80 2.0e-013 8.9e-009 # GCTTCCCA TGGGAAGC 107 69 2.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 307 E= 1.5e-009 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.651466 0.000000 0.348534 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATGGCGT DREME-30 # Word RC Word Pos Neg P-value E-value # BEST AATGGCGT ACGCCATT 74 9 3.6e-014 1.6e-009 # AATGGCGT ACGCCATT 74 9 3.6e-014 1.6e-009 letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 1.6e-009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CHGCAGC DREME-31 # Word RC Word Pos Neg P-value E-value # BEST CHGCAGC GCTGCDG 1453 1091 4.8e-014 2.1e-009 # CAGCAGC GCTGCTG 632 446 4.8e-009 2.1e-004 # CTGCAGC GCTGCAG 488 368 1.9e-005 8.1e-001 # CCGCAGC GCTGCGG 416 323 3.1e-004 1.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1542 E= 2.1e-009 0.000000 1.000000 0.000000 0.000000 0.408560 0.272374 0.000000 0.319066 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CRCRCGCA DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CRCRCGCA TGCGYGYG 292 139 4.9e-014 2.1e-009 # CACACGCA TGCGTGTG 101 45 2.0e-006 8.5e-002 # CGCGCGCA TGCGCGCG 93 42 6.5e-006 2.8e-001 # CACGCGCA TGCGCGTG 62 28 2.2e-004 9.3e+000 # CGCACGCA TGCGTGCG 52 30 9.8e-003 4.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 308 E= 2.1e-009 0.000000 1.000000 0.000000 0.000000 0.538961 0.000000 0.461039 0.000000 0.000000 1.000000 0.000000 0.000000 0.503247 0.000000 0.496753 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACMKCC DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CACMKCC GGMKGTG 1547 1172 3.7e-014 1.6e-009 # CACCGCC GGCGGTG 334 223 1.2e-006 5.3e-002 # CACAGCC GGCTGTG 465 350 2.6e-005 1.1e+000 # CACATCC GGATGTG 246 178 5.2e-004 2.2e+001 # CACCTCC GGAGGTG 548 446 5.7e-004 2.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1623 E= 1.6e-009 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.448552 0.551448 0.000000 0.000000 0.000000 0.000000 0.500308 0.499692 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RKAAA DREME-34 # Word RC Word Pos Neg P-value E-value # BEST RKAAA TTTMY 7786 7076 7.8e-015 3.4e-010 # GGAAA TTTCC 2468 2137 8.8e-008 3.8e-003 # AGAAA TTTCT 4338 4024 4.3e-005 1.9e+000 # ATAAA TTTAT 1379 1221 6.8e-004 3.0e+001 # GTAAA TTTAC 1656 1491 1.1e-003 4.7e+001 letter-probability matrix: alength= 4 w= 5 nsites= 11731 E= 3.4e-010 0.620407 0.000000 0.379593 0.000000 0.000000 0.000000 0.720399 0.279601 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACCAYG DREME-35 # Word RC Word Pos Neg P-value E-value # BEST CCACCAYG CRTGGTGG 195 73 2.1e-014 9.0e-010 # CCACCACG CGTGGTGG 103 27 5.4e-012 2.3e-007 # CCACCATG CATGGTGG 92 46 5.4e-005 2.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 195 E= 9.0e-010 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.528205 0.000000 0.471795 0.000000 0.000000 1.000000 0.000000 MOTIF AAGTGCTG DREME-36 # Word RC Word Pos Neg P-value E-value # BEST AAGTGCTG CAGCACTT 145 52 1.0e-011 4.4e-007 # AAGTGCTG CAGCACTT 145 52 1.0e-011 4.4e-007 letter-probability matrix: alength= 4 w= 8 nsites= 145 E= 4.4e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACACABAC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST ACACABAC GTVTGTGT 502 317 3.2e-011 1.4e-006 # ACACACAC GTGTGTGT 381 240 6.3e-009 2.6e-004 # ACACATAC GTATGTGT 123 74 2.9e-004 1.2e+001 # ACACAGAC GTCTGTGT 124 85 4.1e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1105 E= 1.4e-006 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.730317 0.124887 0.144796 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAAYTACA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST GAAYTACA TGTARTTC 116 38 1.0e-010 4.3e-006 # GAACTACA TGTAGTTC 79 23 1.1e-008 4.6e-004 # GAATTACA TGTAATTC 37 15 1.6e-003 6.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 4.3e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.681034 0.000000 0.318966 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RCCAATCA DREME-39 # Word RC Word Pos Neg P-value E-value # BEST RCCAATCA TGATTGGY 165 70 2.2e-010 9.4e-006 # ACCAATCA TGATTGGT 94 30 3.4e-009 1.4e-004 # GCCAATCA TGATTGGC 78 40 2.9e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 186 E= 9.4e-006 0.564516 0.000000 0.435484 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGGTTTCA DREME-40 # Word RC Word Pos Neg P-value E-value # BEST GGGTTTCA TGAAACCC 129 50 1.4e-009 5.9e-005 # GGGTTTCA TGAAACCC 129 50 1.4e-009 5.9e-005 letter-probability matrix: alength= 4 w= 8 nsites= 131 E= 5.9e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGAGRTCA DREME-41 # Word RC Word Pos Neg P-value E-value # BEST TGAGRTCA TGAYCTCA 195 95 1.9e-009 7.9e-005 # TGAGGTCA TGACCTCA 135 59 2.3e-008 9.6e-004 # TGAGATCA TGATCTCA 60 36 9.1e-003 3.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 199 E= 7.9e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.301508 0.000000 0.698492 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GATCACGA DREME-42 # Word RC Word Pos Neg P-value E-value # BEST GATCACGA TCGTGATC 48 7 6.4e-009 2.7e-004 # GATCACGA TCGTGATC 48 7 6.4e-009 2.7e-004 letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.7e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGYGAGAC DREME-43 # Word RC Word Pos Neg P-value E-value # BEST AGYGAGAC GTCTCRCT 179 87 7.8e-009 3.3e-004 # AGCGAGAC GTCTCGCT 89 41 1.5e-005 6.3e-001 # AGTGAGAC GTCTCACT 90 46 9.8e-005 4.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 3.3e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.497238 0.000000 0.502762 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTCCCTCC DREME-44 # Word RC Word Pos Neg P-value E-value # BEST CTCCCTCC GGAGGGAG 359 225 1.2e-008 5.2e-004 # CTCCCTCC GGAGGGAG 359 225 1.2e-008 5.2e-004 letter-probability matrix: alength= 4 w= 8 nsites= 369 E= 5.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCRCGCCC DREME-45 # Word RC Word Pos Neg P-value E-value # BEST CCRCGCCC GGGCGYGG 390 250 1.3e-008 5.4e-004 # CCACGCCC GGGCGTGG 186 103 5.4e-007 2.3e-002 # CCGCGCCC GGGCGCGG 205 149 1.6e-003 6.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 399 E= 5.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.483709 0.000000 0.516291 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGWTCGA DREME-46 # Word RC Word Pos Neg P-value E-value # BEST GAGWTCGA TCGAWCTC 106 40 2.1e-008 8.8e-004 # GAGTTCGA TCGAACTC 72 24 4.7e-007 2.0e-002 # GAGATCGA TCGATCTC 34 16 7.6e-003 3.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 8.8e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.317757 0.000000 0.000000 0.682243 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGGCGVC DREME-47 # Word RC Word Pos Neg P-value E-value # BEST ATGGCGVC GBCGCCAT 141 65 5.8e-008 2.4e-003 # ATGGCGGC GCCGCCAT 63 29 2.5e-004 1.1e+001 # ATGGCGAC GTCGCCAT 31 10 7.2e-004 3.0e+001 # ATGGCGCC GGCGCCAT 47 26 9.2e-003 3.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 2.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.219858 0.333333 0.446809 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CYGGGAA DREME-48 # Word RC Word Pos Neg P-value E-value # BEST CYGGGAA TTCCCRG 415 283 2.5e-007 1.1e-002 # CCGGGAA TTCCCGG 190 119 3.0e-005 1.2e+000 # CTGGGAA TTCCCAG 228 164 6.7e-004 2.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 423 E= 1.1e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.451537 0.000000 0.548463 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAACATGG DREME-49 # Word RC Word Pos Neg P-value E-value # BEST CAACATGG CCATGTTG 72 24 4.7e-007 2.0e-002 # CAACATGG CCATGTTG 72 24 4.7e-007 2.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 2.0e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGTGACR DREME-50 # Word RC Word Pos Neg P-value E-value # BEST GGTGACR YGTCACC 403 275 3.9e-007 1.6e-002 # GGTGACA TGTCACC 260 179 5.8e-005 2.5e+000 # GGTGACG CGTCACC 145 96 9.3e-004 3.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 406 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.642857 0.000000 0.357143 0.000000 MOTIF ACAGCGSC DREME-51 # Word RC Word Pos Neg P-value E-value # BEST ACAGCGSC GSCGCTGT 142 72 9.1e-007 3.8e-002 # ACAGCGCC GGCGCTGT 80 38 6.7e-005 2.8e+000 # ACAGCGGC GCCGCTGT 62 34 2.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 146 E= 3.8e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.575342 0.424658 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTGGCTG DREME-52 # Word RC Word Pos Neg P-value E-value # BEST ATTGGCTG CAGCCAAT 91 37 9.6e-007 4.0e-002 # ATTGGCTG CAGCCAAT 91 37 9.6e-007 4.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 4.0e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 5539.03 seconds