******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:172537940-172538040 1.0000 100 chr7:102988270-102988370 1.0000 100 chr6:3054582-3054682 1.0000 100 chr10:6033694-6033794 1.0000 100 chr16:85528494-85528594 1.0000 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chr21:35003390-35003490 1.0000 100 chr6:43904494-43904594 1.0000 100 chr7:139915821-139915921 1.0000 100 chr4:128307078-128307178 1.0000 100 chr11:76911365-76911465 1.0000 100 chr18:55592623-55592723 1.0000 100 chr11:59548037-59548137 1.0000 100 chr10:7027860-7027960 1.0000 100 chr19:4791390-4791490 1.0000 100 chr2:30252255-30252355 1.0000 100 chr17:49415020-49415120 1.0000 100 chr12:111404537-11140463 1.0000 100 chr1:11842245-11842345 1.0000 100 chr14:90971644-90971744 1.0000 100 chr10:102742978-10274307 1.0000 100 chr6:84270009-84270109 1.0000 100 chr12:110253106-11025320 1.0000 100 chr6:42028679-42028779 1.0000 100 chr9:131366057-131366157 1.0000 100 chr11:74085660-74085760 1.0000 100 chr11:102476954-10247705 1.0000 100 chr10:17426163-17426263 1.0000 100 chr7:108080056-108080156 1.0000 100 chr19:38675873-38675973 1.0000 100 chr11:91792915-91793015 1.0000 100 chr11:33294746-33294846 1.0000 100 chr19:44587445-44587545 1.0000 100 chr7:139851837-139851937 1.0000 100 chr6:14792625-14792725 1.0000 100 chr2:28663957-28664057 1.0000 100 chr16:79845448-79845548 1.0000 100 chr3:155863359-155863459 1.0000 100 chr3:47225352-47225452 1.0000 100 chrX:136890622-136890722 1.0000 100 chr12:65664815-65664915 1.0000 100 chr1:234963353-234963453 1.0000 100 chr13:36861901-36862001 1.0000 100 chr12:89326995-89327095 1.0000 100 chr15:95560054-95560154 1.0000 100 chr12:47273111-47273211 1.0000 100 chr17:76640928-76641028 1.0000 100 chr6:27136178-27136278 1.0000 100 chr6:157868032-157868132 1.0000 100 chr8:41818783-41818883 1.0000 100 chr6:34719086-34719186 1.0000 100 chr3:170729894-170729994 1.0000 100 chr12:46258067-46258167 1.0000 100 chr14:69697130-69697230 1.0000 100 chr7:127107694-127107794 1.0000 100 chr11:65425894-65425994 1.0000 100 chr5:157278608-157278708 1.0000 100 chr6:157515267-157515367 1.0000 100 chr1:28648676-28648776 1.0000 100 chr5:159230569-159230669 1.0000 100 chr6:49646384-49646484 1.0000 100 chr5:68423047-68423147 1.0000 100 chr7:150477139-150477239 1.0000 100 chr1:167923397-167923497 1.0000 100 chr1:207828319-207828419 1.0000 100 chr8:21509307-21509407 1.0000 100 chr1:204506837-204506937 1.0000 100 chr13:92447762-92447862 1.0000 100 chr11:86143455-86143555 1.0000 100 chr12:46549997-46550097 1.0000 100 chr3:45095353-45095453 1.0000 100 chr19:48872632-48872732 1.0000 100 chr5:131749993-131750093 1.0000 100 chr4:4030447-4030547 1.0000 100 chr4:37000196-37000296 1.0000 100 chr16:11201472-11201572 1.0000 100 chr5:39114148-39114248 1.0000 100 chr16:15464757-15464857 1.0000 100 chr2:178273745-178273845 1.0000 100 chr2:215831374-215831474 1.0000 100 chr17:38415124-38415224 1.0000 100 chr6:19999706-19999806 1.0000 100 chr19:5718335-5718435 1.0000 100 chr22:23439513-23439613 1.0000 100 chr21:14576031-14576131 1.0000 100 chr9:34158026-34158126 1.0000 100 chr22:29582446-29582546 1.0000 100 chr6:118668556-118668656 1.0000 100 chr2:71877159-71877259 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.281 C 0.219 G 0.219 T 0.281 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.281 C 0.220 G 0.220 T 0.281 ******************************************************************************** ******************************************************************************** MOTIF AGATGGAGTYRCTCWKGT MEME-1 width = 18 sites = 124 llr = 2130 E-value = 2.5e-464 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A a3a:::a::15:::41:: pos.-specific C :::::::::5:817:::3 probability G :7::aa:a::42:::6a: matrix T :::a::::a41:9263:7 bits 2.2 * * 2.0 ** * * 1.8 * **** ** * 1.5 * ******* * Relative 1.3 * ******* * * Entropy 1.1 * ******* *** * (24.8 bits) 0.9 ********* *** ** 0.7 ****************** 0.4 ****************** 0.2 ****************** 0.0 ------------------ Multilevel AGATGGAGTCACTCTGGT consensus A TG TAT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chr21:43784183-43784283 + 47 1.00e-11 ctcctattca agatggagtcgctctggt tcaaacacct chr4:151038394-151038494 - 34 1.00e-11 CCCCTATTCA AGATGGAGTCGCTCTGGT TCAAATGCCT chr4:143362654-143362754 + 33 2.28e-11 gccccattca agatggagtcactctggt tcaaatgcct chr17:76601892-76601992 + 38 2.28e-11 tccctattca agatggagtcactctggt tgaagtgcct chr22:30749195-30749295 + 51 2.28e-11 gctttattca agatggagtcactctggt taggatgctt chr21:44845239-44845339 + 65 2.28e-11 accctactca agatggagtcactctggt tcgaacgctt chr15:58352291-58352391 + 26 2.28e-11 cctctatatg agatggagtcactctggt tccacagcct chr7:77474682-77474782 + 13 2.28e-11 cctctcttca agatggagtcactctggt tcaaacaact chr7:141588878-141588978 + 41 2.28e-11 cccctactca agatggagtcactctggt tcaaatgcct chr12:107033715-10703381 - 43 2.28e-11 GCCCTATTTA AGATGGAGTCACTCTGGT TCAAATGCCT chr12:112734779-11273487 + 71 2.28e-11 cccctattca agatggagtcactctggt tcgaacacct chr6:15896003-15896103 + 37 2.28e-11 cccctattca agatggagtcactctggt tcaaaggcct chr9:107675722-107675822 + 46 2.28e-11 cccctattca agatggagtcactctggt tcaaacgcct chr6:89008698-89008798 + 44 2.28e-11 cacctactca agatggagtcactctggt tcaaatacct chr12:46258067-46258167 + 47 7.63e-11 ctcctattta agatggagttgctctggt tcacatgcct chr13:36861901-36862001 - 75 7.63e-11 CCTATTCA AGATGGAGTTGCTCTGGT TCAAATGGCT chr10:17092112-17092212 - 62 7.63e-11 CCCCTATTCA AGATGGAGTTGCTCTGGT TTGAATGCCT chr5:2156324-2156424 - 43 7.63e-11 CCCCTATTCA AGATGGAGTCACTCTGGC TCAAACACCT chr1:1135619-1135719 + 36 7.63e-11 gccctgtgca agatggagttgctctggt tcaaaggtct chr7:41750954-41751054 + 44 7.63e-11 cccccattca agatggagttgctctggt tcaaacgtct chr20:36083038-36083138 - 43 7.63e-11 CACCTACTCA AGATGGAGTTGCTCTGGT TCAAACGCCT chr2:191599419-191599519 - 38 7.63e-11 CCCCTATTCA AGATGGAGTTGCTCTGGT TCAAACACCT chr12:76350548-76350648 + 54 7.63e-11 ctcctattca agatggagttgctctggt tcagatgcct chr1:54307324-54307424 - 22 7.63e-11 CTCCTTTTCA AGATGGAGTTGCTCTGGT TCACACACCC chr3:58440398-58440498 + 62 7.63e-11 ctcctattca agatggagttgctctggt tcacatacct chr4:153537600-153537700 + 5 7.63e-11 ttta agatggagttgctctggt tcaaaagcct chr4:74096442-74096542 + 49 7.63e-11 cccctattca agatggagttgctctggt taaaacgtct chr20:48139505-48139605 + 34 7.63e-11 cccctattca agatggagttgctctggt tcaagtgcct chr6:41292652-41292752 + 37 7.63e-11 ctcctattca agatggagttgctctggt tcacacgcct chr14:103427772-10342787 + 30 7.63e-11 ccccttttca agatggagttgctctggt tcaaacactt chr19:35165435-35165535 + 43 7.63e-11 accctattcg agatggagttgctctggt tcaaacaccc chr11:12379093-12379193 + 57 7.63e-11 gccccattca agatggagttgctctggt tcacatgcct chr17:18223121-18223221 + 68 7.63e-11 ctcctattca agatggagttgctctggt tcatattacc chr20:37559245-37559345 - 39 7.63e-11 CCCCTATTCA AGATGGAGTTGCTCTGGT TCAAACACCT chr10:30425276-30425376 + 25 1.13e-10 gctgtattca agatggagtcgctcttgt tcaaaagctt chr12:14924483-14924583 - 19 1.62e-10 CCCCTATTCA AGATGGAGTTGCTCTGGC TCAAACATCT chr1:18421918-18422018 - 78 1.62e-10 ATTCA AGATGGAGTCACTCTTGT TCAAACGCCC chr9:96904818-96904918 - 55 1.62e-10 CTCCTATTCA AGATGGAGTTGCTCTGGC TCAAATGCCT chr22:23439513-23439613 - 53 2.20e-10 TCCTTATTCA AAATGGAGTCACTCTGGT TCAAATGCCT chr12:11621696-11621796 - 72 3.11e-10 CCCCTATTCA AGATGGAGTTGCTCTTGT TCAAGTGCTT chr15:56783994-56784094 - 46 3.11e-10 CCCCTATTCA AGATGGAGTTGCTCTTGT TCAAATGCCT chr2:37917821-37917921 + 12 4.52e-10 cccctattca agatggagtctctctggt tcaaacatct chr12:46253509-46253609 + 14 4.52e-10 ctcctattta aaatggagttgctctggt tcacatgcct chr14:102550833-10255093 - 21 4.52e-10 CCCCTATTCA AAATGGAGTTGCTCTGGT TCAAATGCCT chr8:100501619-100501719 - 68 5.60e-10 GACCAAACCA AGATGGAGTCACTCATGC TAAGTTCCAT chr7:92427127-92427227 + 33 6.76e-10 accagtgcca agatggagtcacttaggt cacacccaga chr11:46967921-46968021 - 62 8.10e-10 GACTAAACCA AAATGGAGTCACTCAGGC TAAAGCTCCA chr6:27136178-27136278 + 25 8.99e-10 cccctattca agatggagtttctctggt ttaaacgcct chr6:49722330-49722430 + 31 8.99e-10 cccttattta agatggagtttctctggt tcacacacct chr14:37167147-37167247 - 66 1.13e-09 GTTAGAAGCA AGATGGAGTTGCTTAGGT CAGATTTATT chr9:98049620-98049720 + 18 1.13e-09 cccccattca agatggagtcactctagt tcaaatgcct chr11:33294746-33294846 + 34 1.33e-09 TCATGTCTCA AAATGGAGTCACTCATGT CAAGTAGCAT chr11:76911365-76911465 + 30 1.33e-09 ccagtattca agatggagttgccctggt tcaaatgcct chr5:51099073-51099173 - 53 1.65e-09 CCCCTATTCA AGATGGAGTCGCTGTGGT TCAAACACCT chr5:157278608-157278708 + 26 2.10e-09 gaccaaatca aaatggagtcactcatgc taaatgCCAC chr7:107704619-107704719 - 77 2.10e-09 AAATCA AAATGGAGTCACTCATGC TAAAGTTTCA chr7:65369762-65369862 + 76 2.10e-09 aaccaaacca aaatggagtcactcatgc taaatgt chr19:51786908-51787008 - 27 2.63e-09 CTACTATTCA ACATGGAGTTGCTCTGGT TCCAGTGCCT chr10:25761899-25761999 + 13 2.93e-09 cccctattca agatggagttgctgtggt tcatacacct chr7:124965518-124965618 + 34 2.93e-09 cccctattca agatggagttgctgtggt tcaaatgcct chr1:17360286-17360386 + 9 2.93e-09 tttttcta agatggagtcacttatgc caagggtgct chr1:21791979-21792079 + 42 3.25e-09 cccctattca agatggagtcattctggt cagaacaacc chr13:75431306-75431406 - 31 3.63e-09 GACCAAACCA AAATGGAGTTACTCATGC TGAAGTTCCC chr12:131441891-13144199 - 64 3.63e-09 GTTAGAAGCA AGATGGAGTCGGTTAGGT CTGATTTCTT chr2:223037350-223037450 + 45 4.03e-09 gttagaagca agatggagtcagttaggt ctgatttctt chr1:166529378-166529478 + 27 4.03e-09 gttaaatgca agatggagtcagttaggt caaatctttc chr21:42936295-42936395 - 55 4.45e-09 GAAAGAGCCA AGATGGAGTCTGTCTGGC TCTCTCAGCT chr7:139092077-139092177 + 26 4.45e-09 gaaagagcca agatggagtctgtctggc tctcttagct chr2:72757043-72757143 + 35 5.46e-09 aacaataaca aaatggagtcacttatgt caaaacttta chr3:194575482-194575582 + 37 6.06e-09 gttagaagca agatggagttggttaggt caagtctctt chr7:140672426-140672526 + 67 6.06e-09 gttagaagca agatggagttggttaggt cagatctctt chr19:52099336-52099436 - 29 6.06e-09 GTTAAAAGCA AGATGGAGTTGGTTAGGT CGGATCCCTT chr6:24759668-24759768 + 6 8.11e-09 aacca aaatggagtcacttatgc taaaattcca chr1:84381992-84382092 + 55 8.11e-09 gaccagacca aaatggagtcacttatgc taaattccac chr1:223313325-223313425 - 41 8.11e-09 CCCCTATTCA AGATGGAGTCACCCTAGT TCAAATGCCT chr1:112902191-112902291 - 30 8.11e-09 AAACAAATTA AAATGGAGTCACTTATGC TAAGTGTCAT chr22:29582446-29582546 + 5 9.81e-09 agca aaatggagtcggttaggt cagatcactt chr12:92881701-92881801 - 36 9.81e-09 GAGGAGGAAG AAATGGAGTTGGTCTTGC TGTCTCAGAG chr2:61675850-61675950 - 30 1.30e-08 AGGCTAAAAA AAATGGAGTCACCCATGC TAAAGTTCTA chr16:29769461-29769561 - 46 1.30e-08 GACCAAACCA AAATGGAGTCACCCATGC TAAATGCTAC chr1:241696691-241696791 + 34 1.30e-08 cccctattca agatggatttgctctggt tcaaatgcct chr7:8322591-8322691 + 47 1.42e-08 agaccaacca aaatggagtttctcatgc taaagtttca chr6:89777139-89777239 - 10 1.42e-08 CTTAGAAGTA AGATGGAGTCAGCCATGT TAGATTGCT chr7:96361450-96361550 + 37 1.42e-08 gcttgagaca agatggagtcagccatgt cagatttctt chr8:63040164-63040264 - 69 1.42e-08 TTTTGCTTCA AGATGGTGTCACTCTTGC CAGGAAACAG chr11:59548037-59548137 + 32 1.86e-08 cccctattca agatgcagttgctctggt tccaaggcct chr5:126514291-126514391 + 73 1.86e-08 cccctattca aggtggagttgctcttgt tcagacgtct chr5:108531564-108531664 + 16 2.04e-08 aggttgaaca acatggagtaactctggc caagagccca chr1:89952562-89952662 - 18 2.04e-08 GCTAGAAGCA AGATGGAGTCAGCCATGC TAGACTGGTC chr22:39108467-39108567 + 26 2.04e-08 aaaccaaaca aaatggagtcactcgtgc taaatgtgac chr16:21076310-21076410 + 21 2.44e-08 gaccaaacca aaatggagtcactcacgc taaatggcat chr11:110075738-11007583 + 22 2.66e-08 gtcagaagca agatggagtcggttaagt ctgatctctt chr11:97973250-97973350 - 69 2.88e-08 GAGATAAACA ACATGGAGTAACTCAGGC TAAGAAGCCC chr17:16244161-16244261 + 9 2.88e-08 tagaagca agatggagtcagttaagt tagatctctt chr1:11889694-11889794 - 28 3.15e-08 GTACAGATCA AAATGGAGTTTCTTATGT CTTCCTGTCT chr9:136789477-136789577 + 30 3.15e-08 gtacagatca aaatggagtttcttatgt cttccttttt chr15:49188902-49189002 - 31 3.72e-08 AGCCAAACCA AAATGGAGTCATTCATGC TAAAGTTCCA chr7:138214866-138214966 - 59 3.72e-08 AACCAAACCA AAATGGAGTCATTCATGC TAAGACTTTA chr16:15574303-15574403 + 21 4.74e-08 gttagaagca agatggagttgattaggt cagatctctt chr4:79331430-79331530 + 56 4.74e-08 gttagaaaca agatggagttgattaggt cagatctctt chr22:36426736-36426836 - 39 5.99e-08 CCCCTATTCA AGATGGAGTGGCTGTGGT TCCAATGCCT chr17:59290584-59290684 + 60 8.78e-08 gtacagaaca aaatggagtctcctatgt ctacttcttt chr10:102455033-10245513 + 29 8.78e-08 ttacagaaca aaatggagtctcctatgt ctactttttt chr6:3054582-3054682 - 74 8.78e-08 TACAGCACA AAATGGAGTCTCCTATGT CTACTTCTTT chr4:4030447-4030547 + 29 1.02e-07 gaaagagcca agatggaatctgtctggc tctcttagct chr1:200886534-200886634 + 31 1.27e-07 gaacaaacca aaatggtgtcacttatgc taaagtttga chr12:70090868-70090968 - 72 1.46e-07 GAACAAAGCA ACATGGAGTAACTCAAGC TAAGGGCCCA chr6:109424314-109424414 - 26 1.57e-07 CTCCTATTCA AGATGAAGTTGCTGTGGT TCACGTGCCT chr6:89011364-89011464 + 38 1.79e-07 gtgatataca aaatggcatcactctggt tcagagctat chr7:16419068-16419168 - 53 1.79e-07 GTTAGAAGCA AGATGGAGTTAGTTAGGA CTGATCTTTC chr8:41818783-41818883 + 9 2.20e-07 acaaagca atatggagtaactcaagc taagggcccg chr1:86461356-86461456 - 57 2.20e-07 GGAAAAAGCA ATATGGAGTAACTCAAGC TAAGGGCCCA chr4:165426817-165426917 - 36 2.20e-07 GAACAAAGCA ATATGGAGTAACTCAAGC TAAGGGCCTG chr12:118011289-11801138 + 60 2.52e-07 gaccaaacca aaatggagtcacctacgc taaccgccat chr11:97963450-97963550 - 78 2.69e-07 AAACA ACATGGAGTAATTCAGGC TAAGAAGCCC chr1:202805858-202805958 - 76 2.69e-07 TCTGAAA AGATAGTGTTGCTCTGGT TAGGCTTGGC chr7:44992202-44992302 + 26 4.22e-07 gtacataaca aaatggagtctcctgtgt ctacttctct chr15:65185632-65185732 + 48 5.40e-07 ATCACTTGTA ACATGGAGTTGGTATTGT CAGTTAGTTC chr6:2990490-2990590 - 20 6.10e-07 GAAGGAGTCA CGATGGAGTCCGTCTGGC TCTCTTAGCT chr1:236352056-236352156 - 78 6.87e-07 AACTA AAATGGAGCCATTCATGC TGAAGTTCCA chr12:47273111-47273211 + 27 9.75e-07 TTGGTGGAAA AGATGGCATCACTGTTGC CTGAGACACA chr12:57666402-57666502 + 28 9.75e-07 aatgaaacta gaatggagtcacttgtgc taaatatgac chr10:84525075-84525175 + 53 1.89e-06 gaacaaaaca atgtggagtaactcaagc taaggaccca chr15:34336374-34336474 - 64 5.13e-06 ACCACCACCA AGATGGCTTCAGTTCGGT TCATGGTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:43784183-43784283 1e-11 46_[+1]_36 chr4:151038394-151038494 1e-11 33_[-1]_49 chr4:143362654-143362754 2.3e-11 32_[+1]_50 chr17:76601892-76601992 2.3e-11 37_[+1]_45 chr22:30749195-30749295 2.3e-11 50_[+1]_32 chr21:44845239-44845339 2.3e-11 64_[+1]_18 chr15:58352291-58352391 2.3e-11 25_[+1]_57 chr7:77474682-77474782 2.3e-11 12_[+1]_70 chr7:141588878-141588978 2.3e-11 40_[+1]_42 chr12:107033715-10703381 2.3e-11 42_[-1]_40 chr12:112734779-11273487 2.3e-11 70_[+1]_12 chr6:15896003-15896103 2.3e-11 36_[+1]_46 chr9:107675722-107675822 2.3e-11 45_[+1]_37 chr6:89008698-89008798 2.3e-11 43_[+1]_39 chr12:46258067-46258167 7.6e-11 46_[+1]_36 chr13:36861901-36862001 7.6e-11 74_[-1]_8 chr10:17092112-17092212 7.6e-11 61_[-1]_21 chr5:2156324-2156424 7.6e-11 42_[-1]_40 chr1:1135619-1135719 7.6e-11 35_[+1]_47 chr7:41750954-41751054 7.6e-11 43_[+1]_39 chr20:36083038-36083138 7.6e-11 42_[-1]_40 chr2:191599419-191599519 7.6e-11 37_[-1]_45 chr12:76350548-76350648 7.6e-11 53_[+1]_29 chr1:54307324-54307424 7.6e-11 21_[-1]_61 chr3:58440398-58440498 7.6e-11 61_[+1]_21 chr4:153537600-153537700 7.6e-11 4_[+1]_78 chr4:74096442-74096542 7.6e-11 48_[+1]_34 chr20:48139505-48139605 7.6e-11 33_[+1]_49 chr6:41292652-41292752 7.6e-11 36_[+1]_46 chr14:103427772-10342787 7.6e-11 29_[+1]_53 chr19:35165435-35165535 7.6e-11 42_[+1]_40 chr11:12379093-12379193 7.6e-11 56_[+1]_26 chr17:18223121-18223221 7.6e-11 67_[+1]_15 chr20:37559245-37559345 7.6e-11 38_[-1]_44 chr10:30425276-30425376 1.1e-10 24_[+1]_58 chr12:14924483-14924583 1.6e-10 18_[-1]_64 chr1:18421918-18422018 1.6e-10 77_[-1]_5 chr9:96904818-96904918 1.6e-10 54_[-1]_28 chr22:23439513-23439613 2.2e-10 52_[-1]_30 chr12:11621696-11621796 3.1e-10 71_[-1]_11 chr15:56783994-56784094 3.1e-10 45_[-1]_37 chr2:37917821-37917921 4.5e-10 11_[+1]_71 chr12:46253509-46253609 4.5e-10 13_[+1]_69 chr14:102550833-10255093 4.5e-10 20_[-1]_62 chr8:100501619-100501719 5.6e-10 67_[-1]_15 chr7:92427127-92427227 6.8e-10 32_[+1]_50 chr11:46967921-46968021 8.1e-10 61_[-1]_21 chr6:27136178-27136278 9e-10 24_[+1]_58 chr6:49722330-49722430 9e-10 30_[+1]_52 chr14:37167147-37167247 1.1e-09 65_[-1]_17 chr9:98049620-98049720 1.1e-09 17_[+1]_65 chr11:33294746-33294846 1.3e-09 33_[+1]_49 chr11:76911365-76911465 1.3e-09 29_[+1]_53 chr5:51099073-51099173 1.7e-09 52_[-1]_30 chr5:157278608-157278708 2.1e-09 25_[+1]_57 chr7:107704619-107704719 2.1e-09 76_[-1]_6 chr7:65369762-65369862 2.1e-09 75_[+1]_7 chr19:51786908-51787008 2.6e-09 26_[-1]_56 chr10:25761899-25761999 2.9e-09 12_[+1]_70 chr7:124965518-124965618 2.9e-09 33_[+1]_49 chr1:17360286-17360386 2.9e-09 8_[+1]_74 chr1:21791979-21792079 3.3e-09 41_[+1]_41 chr13:75431306-75431406 3.6e-09 30_[-1]_52 chr12:131441891-13144199 3.6e-09 63_[-1]_19 chr2:223037350-223037450 4e-09 44_[+1]_38 chr1:166529378-166529478 4e-09 26_[+1]_56 chr21:42936295-42936395 4.5e-09 54_[-1]_28 chr7:139092077-139092177 4.5e-09 25_[+1]_57 chr2:72757043-72757143 5.5e-09 34_[+1]_48 chr3:194575482-194575582 6.1e-09 36_[+1]_46 chr7:140672426-140672526 6.1e-09 66_[+1]_16 chr19:52099336-52099436 6.1e-09 28_[-1]_54 chr6:24759668-24759768 8.1e-09 5_[+1]_77 chr1:84381992-84382092 8.1e-09 54_[+1]_28 chr1:223313325-223313425 8.1e-09 40_[-1]_42 chr1:112902191-112902291 8.1e-09 29_[-1]_53 chr22:29582446-29582546 9.8e-09 4_[+1]_78 chr12:92881701-92881801 9.8e-09 35_[-1]_47 chr2:61675850-61675950 1.3e-08 29_[-1]_53 chr16:29769461-29769561 1.3e-08 45_[-1]_37 chr1:241696691-241696791 1.3e-08 33_[+1]_49 chr7:8322591-8322691 1.4e-08 46_[+1]_36 chr6:89777139-89777239 1.4e-08 9_[-1]_73 chr7:96361450-96361550 1.4e-08 36_[+1]_46 chr8:63040164-63040264 1.4e-08 68_[-1]_14 chr11:59548037-59548137 1.9e-08 31_[+1]_51 chr5:126514291-126514391 1.9e-08 72_[+1]_10 chr5:108531564-108531664 2e-08 15_[+1]_67 chr1:89952562-89952662 2e-08 17_[-1]_65 chr22:39108467-39108567 2e-08 25_[+1]_57 chr16:21076310-21076410 2.4e-08 20_[+1]_62 chr11:110075738-11007583 2.7e-08 21_[+1]_61 chr11:97973250-97973350 2.9e-08 68_[-1]_14 chr17:16244161-16244261 2.9e-08 8_[+1]_74 chr1:11889694-11889794 3.2e-08 27_[-1]_55 chr9:136789477-136789577 3.2e-08 29_[+1]_53 chr15:49188902-49189002 3.7e-08 30_[-1]_52 chr7:138214866-138214966 3.7e-08 58_[-1]_24 chr16:15574303-15574403 4.7e-08 20_[+1]_62 chr4:79331430-79331530 4.7e-08 55_[+1]_27 chr22:36426736-36426836 6e-08 38_[-1]_44 chr17:59290584-59290684 8.8e-08 59_[+1]_23 chr10:102455033-10245513 8.8e-08 28_[+1]_54 chr6:3054582-3054682 8.8e-08 73_[-1]_9 chr4:4030447-4030547 1e-07 28_[+1]_54 chr1:200886534-200886634 1.3e-07 30_[+1]_52 chr12:70090868-70090968 1.5e-07 71_[-1]_11 chr6:109424314-109424414 1.6e-07 25_[-1]_57 chr6:89011364-89011464 1.8e-07 37_[+1]_45 chr7:16419068-16419168 1.8e-07 52_[-1]_30 chr8:41818783-41818883 2.2e-07 8_[+1]_74 chr1:86461356-86461456 2.2e-07 56_[-1]_26 chr4:165426817-165426917 2.2e-07 35_[-1]_47 chr12:118011289-11801138 2.5e-07 59_[+1]_23 chr11:97963450-97963550 2.7e-07 77_[-1]_5 chr1:202805858-202805958 2.7e-07 75_[-1]_7 chr7:44992202-44992302 4.2e-07 25_[+1]_57 chr15:65185632-65185732 5.4e-07 47_[+1]_35 chr6:2990490-2990590 6.1e-07 19_[-1]_63 chr1:236352056-236352156 6.9e-07 77_[-1]_5 chr12:47273111-47273211 9.7e-07 26_[+1]_56 chr12:57666402-57666502 9.7e-07 27_[+1]_55 chr10:84525075-84525175 1.9e-06 52_[+1]_30 chr15:34336374-34336474 5.1e-06 63_[-1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATGGAGTYRCTCWKGT width=18 seqs=124 chr21:43784183-43784283 ( 47) AGATGGAGTCGCTCTGGT 1 chr4:151038394-151038494 ( 34) AGATGGAGTCGCTCTGGT 1 chr4:143362654-143362754 ( 33) AGATGGAGTCACTCTGGT 1 chr17:76601892-76601992 ( 38) AGATGGAGTCACTCTGGT 1 chr22:30749195-30749295 ( 51) AGATGGAGTCACTCTGGT 1 chr21:44845239-44845339 ( 65) AGATGGAGTCACTCTGGT 1 chr15:58352291-58352391 ( 26) AGATGGAGTCACTCTGGT 1 chr7:77474682-77474782 ( 13) AGATGGAGTCACTCTGGT 1 chr7:141588878-141588978 ( 41) AGATGGAGTCACTCTGGT 1 chr12:107033715-10703381 ( 43) AGATGGAGTCACTCTGGT 1 chr12:112734779-11273487 ( 71) AGATGGAGTCACTCTGGT 1 chr6:15896003-15896103 ( 37) AGATGGAGTCACTCTGGT 1 chr9:107675722-107675822 ( 46) AGATGGAGTCACTCTGGT 1 chr6:89008698-89008798 ( 44) AGATGGAGTCACTCTGGT 1 chr12:46258067-46258167 ( 47) AGATGGAGTTGCTCTGGT 1 chr13:36861901-36862001 ( 75) AGATGGAGTTGCTCTGGT 1 chr10:17092112-17092212 ( 62) AGATGGAGTTGCTCTGGT 1 chr5:2156324-2156424 ( 43) AGATGGAGTCACTCTGGC 1 chr1:1135619-1135719 ( 36) AGATGGAGTTGCTCTGGT 1 chr7:41750954-41751054 ( 44) AGATGGAGTTGCTCTGGT 1 chr20:36083038-36083138 ( 43) AGATGGAGTTGCTCTGGT 1 chr2:191599419-191599519 ( 38) AGATGGAGTTGCTCTGGT 1 chr12:76350548-76350648 ( 54) AGATGGAGTTGCTCTGGT 1 chr1:54307324-54307424 ( 22) AGATGGAGTTGCTCTGGT 1 chr3:58440398-58440498 ( 62) AGATGGAGTTGCTCTGGT 1 chr4:153537600-153537700 ( 5) AGATGGAGTTGCTCTGGT 1 chr4:74096442-74096542 ( 49) AGATGGAGTTGCTCTGGT 1 chr20:48139505-48139605 ( 34) AGATGGAGTTGCTCTGGT 1 chr6:41292652-41292752 ( 37) AGATGGAGTTGCTCTGGT 1 chr14:103427772-10342787 ( 30) AGATGGAGTTGCTCTGGT 1 chr19:35165435-35165535 ( 43) AGATGGAGTTGCTCTGGT 1 chr11:12379093-12379193 ( 57) AGATGGAGTTGCTCTGGT 1 chr17:18223121-18223221 ( 68) AGATGGAGTTGCTCTGGT 1 chr20:37559245-37559345 ( 39) AGATGGAGTTGCTCTGGT 1 chr10:30425276-30425376 ( 25) AGATGGAGTCGCTCTTGT 1 chr12:14924483-14924583 ( 19) AGATGGAGTTGCTCTGGC 1 chr1:18421918-18422018 ( 78) AGATGGAGTCACTCTTGT 1 chr9:96904818-96904918 ( 55) AGATGGAGTTGCTCTGGC 1 chr22:23439513-23439613 ( 53) AAATGGAGTCACTCTGGT 1 chr12:11621696-11621796 ( 72) AGATGGAGTTGCTCTTGT 1 chr15:56783994-56784094 ( 46) AGATGGAGTTGCTCTTGT 1 chr2:37917821-37917921 ( 12) AGATGGAGTCTCTCTGGT 1 chr12:46253509-46253609 ( 14) AAATGGAGTTGCTCTGGT 1 chr14:102550833-10255093 ( 21) AAATGGAGTTGCTCTGGT 1 chr8:100501619-100501719 ( 68) AGATGGAGTCACTCATGC 1 chr7:92427127-92427227 ( 33) AGATGGAGTCACTTAGGT 1 chr11:46967921-46968021 ( 62) AAATGGAGTCACTCAGGC 1 chr6:27136178-27136278 ( 25) AGATGGAGTTTCTCTGGT 1 chr6:49722330-49722430 ( 31) AGATGGAGTTTCTCTGGT 1 chr14:37167147-37167247 ( 66) AGATGGAGTTGCTTAGGT 1 chr9:98049620-98049720 ( 18) AGATGGAGTCACTCTAGT 1 chr11:33294746-33294846 ( 34) AAATGGAGTCACTCATGT 1 chr11:76911365-76911465 ( 30) AGATGGAGTTGCCCTGGT 1 chr5:51099073-51099173 ( 53) AGATGGAGTCGCTGTGGT 1 chr5:157278608-157278708 ( 26) AAATGGAGTCACTCATGC 1 chr7:107704619-107704719 ( 77) AAATGGAGTCACTCATGC 1 chr7:65369762-65369862 ( 76) AAATGGAGTCACTCATGC 1 chr19:51786908-51787008 ( 27) ACATGGAGTTGCTCTGGT 1 chr10:25761899-25761999 ( 13) AGATGGAGTTGCTGTGGT 1 chr7:124965518-124965618 ( 34) AGATGGAGTTGCTGTGGT 1 chr1:17360286-17360386 ( 9) AGATGGAGTCACTTATGC 1 chr1:21791979-21792079 ( 42) AGATGGAGTCATTCTGGT 1 chr13:75431306-75431406 ( 31) AAATGGAGTTACTCATGC 1 chr12:131441891-13144199 ( 64) AGATGGAGTCGGTTAGGT 1 chr2:223037350-223037450 ( 45) AGATGGAGTCAGTTAGGT 1 chr1:166529378-166529478 ( 27) AGATGGAGTCAGTTAGGT 1 chr21:42936295-42936395 ( 55) AGATGGAGTCTGTCTGGC 1 chr7:139092077-139092177 ( 26) AGATGGAGTCTGTCTGGC 1 chr2:72757043-72757143 ( 35) AAATGGAGTCACTTATGT 1 chr3:194575482-194575582 ( 37) AGATGGAGTTGGTTAGGT 1 chr7:140672426-140672526 ( 67) AGATGGAGTTGGTTAGGT 1 chr19:52099336-52099436 ( 29) AGATGGAGTTGGTTAGGT 1 chr6:24759668-24759768 ( 6) AAATGGAGTCACTTATGC 1 chr1:84381992-84382092 ( 55) AAATGGAGTCACTTATGC 1 chr1:223313325-223313425 ( 41) AGATGGAGTCACCCTAGT 1 chr1:112902191-112902291 ( 30) AAATGGAGTCACTTATGC 1 chr22:29582446-29582546 ( 5) AAATGGAGTCGGTTAGGT 1 chr12:92881701-92881801 ( 36) AAATGGAGTTGGTCTTGC 1 chr2:61675850-61675950 ( 30) AAATGGAGTCACCCATGC 1 chr16:29769461-29769561 ( 46) AAATGGAGTCACCCATGC 1 chr1:241696691-241696791 ( 34) AGATGGATTTGCTCTGGT 1 chr7:8322591-8322691 ( 47) AAATGGAGTTTCTCATGC 1 chr6:89777139-89777239 ( 10) AGATGGAGTCAGCCATGT 1 chr7:96361450-96361550 ( 37) AGATGGAGTCAGCCATGT 1 chr8:63040164-63040264 ( 69) AGATGGTGTCACTCTTGC 1 chr11:59548037-59548137 ( 32) AGATGCAGTTGCTCTGGT 1 chr5:126514291-126514391 ( 73) AGGTGGAGTTGCTCTTGT 1 chr5:108531564-108531664 ( 16) ACATGGAGTAACTCTGGC 1 chr1:89952562-89952662 ( 18) AGATGGAGTCAGCCATGC 1 chr22:39108467-39108567 ( 26) AAATGGAGTCACTCGTGC 1 chr16:21076310-21076410 ( 21) AAATGGAGTCACTCACGC 1 chr11:110075738-11007583 ( 22) AGATGGAGTCGGTTAAGT 1 chr11:97973250-97973350 ( 69) ACATGGAGTAACTCAGGC 1 chr17:16244161-16244261 ( 9) AGATGGAGTCAGTTAAGT 1 chr1:11889694-11889794 ( 28) AAATGGAGTTTCTTATGT 1 chr9:136789477-136789577 ( 30) AAATGGAGTTTCTTATGT 1 chr15:49188902-49189002 ( 31) AAATGGAGTCATTCATGC 1 chr7:138214866-138214966 ( 59) AAATGGAGTCATTCATGC 1 chr16:15574303-15574403 ( 21) AGATGGAGTTGATTAGGT 1 chr4:79331430-79331530 ( 56) AGATGGAGTTGATTAGGT 1 chr22:36426736-36426836 ( 39) AGATGGAGTGGCTGTGGT 1 chr17:59290584-59290684 ( 60) AAATGGAGTCTCCTATGT 1 chr10:102455033-10245513 ( 29) AAATGGAGTCTCCTATGT 1 chr6:3054582-3054682 ( 74) AAATGGAGTCTCCTATGT 1 chr4:4030447-4030547 ( 29) AGATGGAATCTGTCTGGC 1 chr1:200886534-200886634 ( 31) AAATGGTGTCACTTATGC 1 chr12:70090868-70090968 ( 72) ACATGGAGTAACTCAAGC 1 chr6:109424314-109424414 ( 26) AGATGAAGTTGCTGTGGT 1 chr6:89011364-89011464 ( 38) AAATGGCATCACTCTGGT 1 chr7:16419068-16419168 ( 53) AGATGGAGTTAGTTAGGA 1 chr8:41818783-41818883 ( 9) ATATGGAGTAACTCAAGC 1 chr1:86461356-86461456 ( 57) ATATGGAGTAACTCAAGC 1 chr4:165426817-165426917 ( 36) ATATGGAGTAACTCAAGC 1 chr12:118011289-11801138 ( 60) AAATGGAGTCACCTACGC 1 chr11:97963450-97963550 ( 78) ACATGGAGTAATTCAGGC 1 chr1:202805858-202805958 ( 76) AGATAGTGTTGCTCTGGT 1 chr7:44992202-44992302 ( 26) AAATGGAGTCTCCTGTGT 1 chr15:65185632-65185732 ( 48) ACATGGAGTTGGTATTGT 1 chr6:2990490-2990590 ( 20) CGATGGAGTCCGTCTGGC 1 chr1:236352056-236352156 ( 78) AAATGGAGCCATTCATGC 1 chr12:47273111-47273211 ( 27) AGATGGCATCACTGTTGC 1 chr12:57666402-57666502 ( 28) GAATGGAGTCACTTGTGC 1 chr10:84525075-84525175 ( 53) ATGTGGAGTAACTCAAGC 1 chr15:34336374-34336474 ( 64) AGATGGCTTCAGTTCGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 49800 bayes= 9.35373 E= 2.5e-464 181 -476 -476 -1360 -8 -218 157 -312 181 -1360 -377 -1360 -1360 -1360 -1360 183 -512 -1360 218 -1360 -512 -476 216 -1360 176 -318 -1360 -353 -353 -1360 213 -412 -1360 -476 -1360 182 -212 128 -476 49 79 -476 88 -142 -412 183 -44 -280 -1360 -118 -1360 169 -512 169 -218 -26 52 -476 -318 101 -195 -377 146 13 -1360 -1360 219 -1360 -512 56 -1360 125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 124 E= 2.5e-464 0.983871 0.008065 0.008065 0.000000 0.266129 0.048387 0.653226 0.032258 0.983871 0.000000 0.016129 0.000000 0.000000 0.000000 0.000000 1.000000 0.008065 0.000000 0.991935 0.000000 0.008065 0.008065 0.983871 0.000000 0.951613 0.024194 0.000000 0.024194 0.024194 0.000000 0.959677 0.016129 0.000000 0.008065 0.000000 0.991935 0.064516 0.532258 0.008065 0.395161 0.483871 0.008065 0.403226 0.104839 0.016129 0.782258 0.161290 0.040323 0.000000 0.096774 0.000000 0.903226 0.008065 0.709677 0.048387 0.233871 0.403226 0.008065 0.024194 0.564516 0.072581 0.016129 0.604839 0.306452 0.000000 0.000000 1.000000 0.000000 0.008065 0.322581 0.000000 0.669355 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAGTYRCTCWKGT MEME-1 regular expression -------------------------------------------------------------------------------- A[GA]ATGGAGT[CT][AG]CT[CT][TA][GT]G[TC] -------------------------------------------------------------------------------- Time 479.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 width = 29 sites = 40 llr = 1192 E-value = 2.1e-298 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 111::a1::::a:::19::191:1::19: pos.-specific C 11919::aa16:::::1a98:197aa::1 probability G 8:::::9:::::::::1:::191:::::: matrix T :9191::::94:aaa9:111::13:1919 bits 2.2 2.0 * * * 1.8 * ** ** ** ** 1.5 ******* **** ** *** ** Relative 1.3 * ******** ************ *** * Entropy 1.1 ********** ****************** (43.0 bits) 0.9 ***************************** 0.7 ***************************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GTCTCAGCCTCATTTTACCCAGCCCCTAT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr22:36426736-36426836 - 60 2.49e-18 AGCCCAGTAG GTCTCAGCCTCATTTTACCCAGCCCCTAT TCAAGATGGA chr6:15896003-15896103 + 5 2.49e-18 gtag gtctcagcctcattttacccagcccctat tcaagatgga chr5:126514291-126514391 + 41 5.66e-18 agcccagcag gtctcagccttattttacccagcccctat tcaaggtgga chr3:43648847-43648947 + 55 5.66e-18 aacccagtag gtctcagccttattttacccagcccctat tcaagatgaa chr20:48139505-48139605 + 2 5.66e-18 g gtctcagccttattttacccagcccctat tcaagatgga chr6:109424314-109424414 - 47 8.84e-18 AACCCAGTAG GTCTCAGCCTCATTTTACCCAGCTCCTAT TCAAGATGAA chr3:58440398-58440498 + 30 8.84e-18 tAAccagtag gtctcagcctcattttacccagctcctat tcaagatgga chr6:41292652-41292752 + 5 8.84e-18 gtag gtctcagcctcattttacccagctcctat tcaagatgga chr21:43784183-43784283 + 15 8.84e-18 agcccagtag gtctcagcctcattttacccagctcctat tcaagatgga chr1:241696691-241696791 + 2 1.06e-16 g gactcagccttattttacccagcccctat tcaagatgga chr20:37559245-37559345 - 60 1.52e-16 AGCCCAGCAG GTCTCAGCCTCATTTCACCCAGCCCCTAT TCAAGATGGA chr12:112734779-11273487 + 39 1.80e-16 agcttagtag gtctcaaccttattttacccagcccctat tcaagatgga chr17:18223121-18223221 + 36 2.16e-16 agcccagtag gtctcagcctcattttacccacctcctat tcaagatgga chr7:41750954-41751054 + 12 2.97e-16 agcccagcag gtctcagccttattttacccagcccccat tcaagatgga chr11:70391397-70391497 + 70 3.22e-16 atcccagtag gtttcagcctcattttacccagctcctat tc chr4:143362654-143362754 + 2 6.74e-16 g gtctcagccttattttacccagccccatt caagatggag chr7:141588878-141588978 + 9 1.72e-15 cccagtag gtctcagcctctttttacccagcccctac tcaagatgga chr14:69697130-69697230 + 50 2.13e-15 agcccagtag atctcagcctcattttactcagcccctat tcaagatgga chr17:76601892-76601992 + 6 2.45e-15 agcag gtctcaacctcattttacccagtccctat tcaagatgga chr12:107033715-10703381 - 64 3.44e-15 CTCAGCAG GTCTCAGCCTTATTTTACCAAGGCCCTAT TTAAGATGGA chr12:76350548-76350648 + 22 5.74e-15 tgcagcctag atcttagcctcattttacccagctcctat tcaagatgga chr12:46258067-46258167 + 15 6.30e-15 agctcagtgg ctctcagcctcattttactcagctcctat ttaagatgga chr2:191599419-191599519 - 59 8.92e-15 AGCCCAGTAG GTCTCAGCCGTATTTTACCCAACCCCTAT TCAAGATGGA chr14:102550833-10255093 - 42 8.92e-15 GCCCATCTAG GTCTCAGCCTCACTTTACACAGCCCCTAT TCAAAATGGA chr15:56783994-56784094 - 67 1.27e-14 AATAG GTCTCAGACTCAATTTACCCAGCCCCTAT TCAAGATGGA chr19:51786908-51787008 - 48 3.59e-14 AGCCCAGTAG GTCTCAGCCTAATTTTACCCAGCTACTAT TCAACATGGA chr6:89008698-89008798 + 12 3.97e-14 ggcccagaag gtatcagccttattttacccagcacctac tcaagatgga chr5:2156324-2156424 - 64 4.74e-14 CCCTGCAG GCTTCAGCGTCATTTTACCCAGCCCCTAT TCAAGATGGA chr1:1135619-1135719 + 4 6.94e-14 ccg ggctcagcctcattttacccaggccctgt gcaagatgga chr1:54307324-54307424 - 43 7.56e-14 AGCTCAGTAG GTTTCAGCCTCATCTTACCCAGCTCCTTT TCAAGATGGA chr20:36083038-36083138 - 64 1.89e-13 CCCAGCAG GTCTTAGCCTTATTTTACCTAGCACCTAC TCAAGATGGA chr1:14777873-14777973 + 52 2.59e-13 agcccagtag gtctcagccttattttacccaatctctat tcaagatgga chr9:107675722-107675822 + 14 3.05e-13 agcccagtag ttcttagctttattttacccagcccctat tcaagatgga chr4:74096442-74096542 + 17 1.11e-12 agcccagtaa acctcagccccattttgcctagcccctat tcaagatgga chr1:11688508-11688608 - 13 1.39e-12 GGCCCAGCAA GTCCCAACCCCATTTGACCCAGCCCCTAC TCAAGATGGG chr11:12379093-12379193 + 26 3.18e-11 cagtaggtct cactcagccttgttttacctggccccatt caagatggag chr1:21791979-21792079 + 10 3.62e-11 gcccagcag gtcccatcctcattctgtctagcccctat tcaagatgga chr7:124965518-124965618 + 2 2.01e-10 c caacaggccttattttacctagcccctat tcaagatgga chr4:151038394-151038494 - 54 2.01e-10 AGCCCAGTAG GTCTCAGCCTCATTTACCCAGCCCCTATT CAAGATGGAG chr1:223313325-223313425 - 61 1.80e-09 AGTCCAGTAG GTCTCAGCCTTATTTACTCAGCCCCTATT CAAGATGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:36426736-36426836 2.5e-18 59_[-2]_12 chr6:15896003-15896103 2.5e-18 4_[+2]_67 chr5:126514291-126514391 5.7e-18 40_[+2]_31 chr3:43648847-43648947 5.7e-18 54_[+2]_17 chr20:48139505-48139605 5.7e-18 1_[+2]_70 chr6:109424314-109424414 8.8e-18 46_[-2]_25 chr3:58440398-58440498 8.8e-18 29_[+2]_42 chr6:41292652-41292752 8.8e-18 4_[+2]_67 chr21:43784183-43784283 8.8e-18 14_[+2]_57 chr1:241696691-241696791 1.1e-16 1_[+2]_70 chr20:37559245-37559345 1.5e-16 59_[-2]_12 chr12:112734779-11273487 1.8e-16 38_[+2]_33 chr17:18223121-18223221 2.2e-16 35_[+2]_36 chr7:41750954-41751054 3e-16 11_[+2]_60 chr11:70391397-70391497 3.2e-16 69_[+2]_2 chr4:143362654-143362754 6.7e-16 1_[+2]_70 chr7:141588878-141588978 1.7e-15 8_[+2]_63 chr14:69697130-69697230 2.1e-15 49_[+2]_22 chr17:76601892-76601992 2.5e-15 5_[+2]_66 chr12:107033715-10703381 3.4e-15 63_[-2]_8 chr12:76350548-76350648 5.7e-15 21_[+2]_50 chr12:46258067-46258167 6.3e-15 14_[+2]_57 chr2:191599419-191599519 8.9e-15 58_[-2]_13 chr14:102550833-10255093 8.9e-15 41_[-2]_30 chr15:56783994-56784094 1.3e-14 66_[-2]_5 chr19:51786908-51787008 3.6e-14 47_[-2]_24 chr6:89008698-89008798 4e-14 11_[+2]_60 chr5:2156324-2156424 4.7e-14 63_[-2]_8 chr1:1135619-1135719 6.9e-14 3_[+2]_68 chr1:54307324-54307424 7.6e-14 42_[-2]_29 chr20:36083038-36083138 1.9e-13 63_[-2]_8 chr1:14777873-14777973 2.6e-13 51_[+2]_20 chr9:107675722-107675822 3.1e-13 13_[+2]_58 chr4:74096442-74096542 1.1e-12 16_[+2]_55 chr1:11688508-11688608 1.4e-12 12_[-2]_59 chr11:12379093-12379193 3.2e-11 25_[+2]_46 chr1:21791979-21792079 3.6e-11 9_[+2]_62 chr7:124965518-124965618 2e-10 1_[+2]_70 chr4:151038394-151038494 2e-10 53_[-2]_18 chr1:223313325-223313425 1.8e-09 60_[-2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCTCAGCCTYATTTTACCCAGCCCCTAT width=29 seqs=40 chr22:36426736-36426836 ( 60) GTCTCAGCCTCATTTTACCCAGCCCCTAT 1 chr6:15896003-15896103 ( 5) GTCTCAGCCTCATTTTACCCAGCCCCTAT 1 chr5:126514291-126514391 ( 41) GTCTCAGCCTTATTTTACCCAGCCCCTAT 1 chr3:43648847-43648947 ( 55) GTCTCAGCCTTATTTTACCCAGCCCCTAT 1 chr20:48139505-48139605 ( 2) GTCTCAGCCTTATTTTACCCAGCCCCTAT 1 chr6:109424314-109424414 ( 47) GTCTCAGCCTCATTTTACCCAGCTCCTAT 1 chr3:58440398-58440498 ( 30) GTCTCAGCCTCATTTTACCCAGCTCCTAT 1 chr6:41292652-41292752 ( 5) GTCTCAGCCTCATTTTACCCAGCTCCTAT 1 chr21:43784183-43784283 ( 15) GTCTCAGCCTCATTTTACCCAGCTCCTAT 1 chr1:241696691-241696791 ( 2) GACTCAGCCTTATTTTACCCAGCCCCTAT 1 chr20:37559245-37559345 ( 60) GTCTCAGCCTCATTTCACCCAGCCCCTAT 1 chr12:112734779-11273487 ( 39) GTCTCAACCTTATTTTACCCAGCCCCTAT 1 chr17:18223121-18223221 ( 36) GTCTCAGCCTCATTTTACCCACCTCCTAT 1 chr7:41750954-41751054 ( 12) GTCTCAGCCTTATTTTACCCAGCCCCCAT 1 chr11:70391397-70391497 ( 70) GTTTCAGCCTCATTTTACCCAGCTCCTAT 1 chr4:143362654-143362754 ( 2) GTCTCAGCCTTATTTTACCCAGCCCCATT 1 chr7:141588878-141588978 ( 9) GTCTCAGCCTCTTTTTACCCAGCCCCTAC 1 chr14:69697130-69697230 ( 50) ATCTCAGCCTCATTTTACTCAGCCCCTAT 1 chr17:76601892-76601992 ( 6) GTCTCAACCTCATTTTACCCAGTCCCTAT 1 chr12:107033715-10703381 ( 64) GTCTCAGCCTTATTTTACCAAGGCCCTAT 1 chr12:76350548-76350648 ( 22) ATCTTAGCCTCATTTTACCCAGCTCCTAT 1 chr12:46258067-46258167 ( 15) CTCTCAGCCTCATTTTACTCAGCTCCTAT 1 chr2:191599419-191599519 ( 59) GTCTCAGCCGTATTTTACCCAACCCCTAT 1 chr14:102550833-10255093 ( 42) GTCTCAGCCTCACTTTACACAGCCCCTAT 1 chr15:56783994-56784094 ( 67) GTCTCAGACTCAATTTACCCAGCCCCTAT 1 chr19:51786908-51787008 ( 48) GTCTCAGCCTAATTTTACCCAGCTACTAT 1 chr6:89008698-89008798 ( 12) GTATCAGCCTTATTTTACCCAGCACCTAC 1 chr5:2156324-2156424 ( 64) GCTTCAGCGTCATTTTACCCAGCCCCTAT 1 chr1:1135619-1135719 ( 4) GGCTCAGCCTCATTTTACCCAGGCCCTGT 1 chr1:54307324-54307424 ( 43) GTTTCAGCCTCATCTTACCCAGCTCCTTT 1 chr20:36083038-36083138 ( 64) GTCTTAGCCTTATTTTACCTAGCACCTAC 1 chr1:14777873-14777973 ( 52) GTCTCAGCCTTATTTTACCCAATCTCTAT 1 chr9:107675722-107675822 ( 14) TTCTTAGCTTTATTTTACCCAGCCCCTAT 1 chr4:74096442-74096542 ( 17) ACCTCAGCCCCATTTTGCCTAGCCCCTAT 1 chr1:11688508-11688608 ( 13) GTCCCAACCCCATTTGACCCAGCCCCTAC 1 chr11:12379093-12379193 ( 26) CACTCAGCCTTGTTTTACCTGGCCCCATT 1 chr1:21791979-21792079 ( 10) GTCCCATCCTCATTCTGTCTAGCCCCTAT 1 chr7:124965518-124965618 ( 2) CAACAGGCCTTATTTTACCTAGCCCCTAT 1 chr4:151038394-151038494 ( 54) GTCTCAGCCTCATTTACCCAGCCCCTATT 1 chr1:223313325-223313425 ( 61) GTCTCAGCCTTATTTACTCAGCCCCTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.3272 E= 2.1e-298 -190 -155 191 -348 -190 -213 -313 160 -249 199 -1197 -190 -1197 -155 -1197 172 -348 204 -1197 -190 180 -1197 -313 -1197 -190 -1197 204 -348 -348 215 -1197 -1197 -1197 211 -313 -348 -1197 -213 -313 172 -348 139 -1197 51 176 -1197 -313 -348 -348 -313 -1197 176 -1197 -313 -1197 180 -1197 -313 -1197 180 -249 -313 -313 168 168 -213 -213 -1197 -1197 211 -1197 -249 -348 207 -1197 -249 -190 187 -1197 -117 172 -1197 -155 -1197 -249 -155 199 -1197 -1197 204 -213 -249 -249 167 -1197 -17 -348 211 -1197 -348 -1197 211 -1197 -249 -149 -313 -1197 164 160 -1197 -313 -117 -1197 -113 -1197 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 40 E= 2.1e-298 0.075000 0.075000 0.825000 0.025000 0.075000 0.050000 0.025000 0.850000 0.050000 0.875000 0.000000 0.075000 0.000000 0.075000 0.000000 0.925000 0.025000 0.900000 0.000000 0.075000 0.975000 0.000000 0.025000 0.000000 0.075000 0.000000 0.900000 0.025000 0.025000 0.975000 0.000000 0.000000 0.000000 0.950000 0.025000 0.025000 0.000000 0.050000 0.025000 0.925000 0.025000 0.575000 0.000000 0.400000 0.950000 0.000000 0.025000 0.025000 0.025000 0.025000 0.000000 0.950000 0.000000 0.025000 0.000000 0.975000 0.000000 0.025000 0.000000 0.975000 0.050000 0.025000 0.025000 0.900000 0.900000 0.050000 0.050000 0.000000 0.000000 0.950000 0.000000 0.050000 0.025000 0.925000 0.000000 0.050000 0.075000 0.800000 0.000000 0.125000 0.925000 0.000000 0.075000 0.000000 0.050000 0.075000 0.875000 0.000000 0.000000 0.900000 0.050000 0.050000 0.050000 0.700000 0.000000 0.250000 0.025000 0.950000 0.000000 0.025000 0.000000 0.950000 0.000000 0.050000 0.100000 0.025000 0.000000 0.875000 0.850000 0.000000 0.025000 0.125000 0.000000 0.100000 0.000000 0.900000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTCAGCCTYATTTTACCCAGCCCCTAT MEME-2 regular expression -------------------------------------------------------------------------------- GTCTCAGCCT[CT]ATTTTACCCAGC[CT]CCTAT -------------------------------------------------------------------------------- Time 908.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TCAAAYGCCTCTGACA MEME-3 width = 16 sites = 62 llr = 1002 E-value = 6.6e-171 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::989:3::::::9:9 pos.-specific C :a12:4:991a:::9: probability G ::::1:7:::::a::: matrix T a::::5:119:a:::: bits 2.2 * 2.0 * * 1.8 ** * *** 1.5 ** ****** * Relative 1.3 ** * ********* Entropy 1.1 *** * ********** (23.3 bits) 0.9 ***** ********** 0.7 ***** ********** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TCAAATGCCTCTGACA consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr16:15464757-15464857 + 11 2.64e-10 tcactctggt tcaaatgcctctgaca AAGCCAGCAT chr11:76911365-76911465 + 48 2.64e-10 ttgccctggt tcaaatgcctctgaca ctaccatggt chr4:143362654-143362754 + 51 2.64e-10 tcactctggt tcaaatgcctctgaca CATAGGCATA chr7:124965518-124965618 + 52 2.64e-10 ttgctgtggt tcaaatgcctctgaca aaactatgtg chr1:234261526-234261626 + 12 2.64e-10 tcactcttgt tcaaatgcctctgaca AAAGCGGTGT chr7:141588878-141588978 + 59 2.64e-10 tcactctggt tcaaatgcctctgaca cttaccactt chr1:223313325-223313425 - 25 2.64e-10 TCACCCTAGT TCAAATGCCTCTGACA CTACTACCCC chr11:5367546-5367646 + 12 2.64e-10 ttgctctggt tcaaatgcctctgaca AAAGGAACAA chr4:151038394-151038494 - 18 2.64e-10 TCGCTCTGGT TCAAATGCCTCTGACA ATATGCCTGG chr14:102550833-10255093 - 5 2.64e-10 TTGCTCTGGT TCAAATGCCTCTGACA GCCA chr16:17590841-17590941 - 71 2.64e-10 TCACTCTGGT TCAAATGCCTCTGACA GTACTAACCT chr1:241696691-241696791 + 52 2.64e-10 ttgctctggt tcaaatgcctctgaca CCTTGATCTC chr9:96904818-96904918 - 39 2.64e-10 TTGCTCTGGC TCAAATGCCTCTGACA CCAACACTCA chr15:56783994-56784094 - 30 2.64e-10 TTGCTCTTGT TCAAATGCCTCTGACA CTTCTTTCTG chr20:36083038-36083138 - 27 4.71e-10 TTGCTCTGGT TCAAACGCCTCTGACA GAACCAATAG chr12:46258067-46258167 + 65 1.01e-09 ttgctctggt tcacatgcctctgaca gaagtagttc chr12:46253509-46253609 + 32 1.01e-09 ttgctctggt tcacatgcctctgaca tttcccccct chr5:51099073-51099173 - 37 1.44e-09 TCGCTGTGGT TCAAACACCTCTGACA AAATCATGTA chr2:191599419-191599519 - 22 1.44e-09 TTGCTCTGGT TCAAACACCTCTGACA GAACTATTTC chr6:41292652-41292752 + 55 1.44e-09 ttgctctggt tcacacgcctctgaca ACTGCACCAG chr9:94402035-94402135 + 13 1.44e-09 tcgctctggt tcacacgcctctgaca gttctaggct chr22:36426736-36426836 - 23 1.86e-09 TGGCTGTGGT TCCAATGCCTCTGACA CAAACAGGCG chr20:48139505-48139605 + 52 2.23e-09 ttgctctggt tcaagtgcctctgaca atcatggggc chr4:153537600-153537700 + 23 2.65e-09 ttgctctggt tcaaaagcctctgaca AACCTGTAGG chr7:41750954-41751054 + 62 4.43e-09 ttgctctggt tcaaacgtctctgaca gtgatgtcat chr6:49722330-49722430 + 49 6.22e-09 tttctctggt tcacacacctctgaca aaaccatgca chr9:98049620-98049720 + 36 6.22e-09 tcactctagt tcaaatgcctctgcca CAGtgataaa chr12:107033715-10703381 - 27 7.49e-09 TCACTCTGGT TCAAATGCCTGTGACA GTGTCAGCAC chr22:23439513-23439613 - 37 8.19e-09 TCACTCTGGT TCAAATGCCTCTGATA CCCGCACATT chr9:107675722-107675822 + 64 9.78e-09 tcactctggt tcaaacgcctctgaga taagggcctt chr20:31505753-31505853 - 75 1.24e-08 TTGCTCTGGT TCAAGCACCTCTGACA AAGGTATATA chr2:37917821-37917921 + 30 1.71e-08 tctctctggt tcaaacatctctgaca GACTGATGGA chr12:14924483-14924583 - 3 1.71e-08 TTGCTCTGGC TCAAACATCTCTGACA GC chr14:103427772-10342787 + 48 1.71e-08 ttgctctggt tcaaacacttctgaca tatttccccc chr19:35165435-35165535 + 61 1.71e-08 ttgctctggt tcaaacacccctgaca tgacatcaaa chr11:59548037-59548137 + 50 2.25e-08 ttgctctggt tccaaggcctctgaca GAAGGTTGAA chr20:37559245-37559345 - 23 2.25e-08 TTGCTCTGGT TCAAACACCTCTGACT CTGGCATGTA chr19:51786908-51787008 - 11 2.44e-08 TTGCTCTGGT TCCAGTGCCTCTGACA TCATTACAGT chr6:27136178-27136278 + 43 2.65e-08 tttctctggt ttaaacgcctctgaca aagtttgctg chr5:2156324-2156424 - 27 2.65e-08 TCACTCTGGC TCAAACACCTGTGACA AATGTTGAGA chr1:1135619-1135719 + 54 2.86e-08 ttgctctggt tcaaaggtctctgaca TAAAGACCTC chr12:11621696-11621796 - 56 3.07e-08 TTGCTCTTGT TCAAGTGCTTCTGACA GTTCCTTAAA chr10:30425276-30425376 + 43 3.37e-08 tcgctcttgt tcaaaagcttctgaca acaggattaa chr11:12379093-12379193 + 75 4.72e-08 ttgctctggt tcacatgcctcggaca aaatcactgt chr21:44845239-44845339 + 83 5.29e-08 tcactctggt tcgaacgcttctgaca GA chr12:76350548-76350648 + 72 5.29e-08 ttgctctggt tcagatgcctctgacG CACCCACCAA chr8:93874025-93874125 + 8 5.80e-08 ctctagt tcagatgcctctggca taactaccca chr1:18421918-18422018 - 62 6.23e-08 TCACTCTTGT TCAAACGCCCCTGACT GGGCCAGCTT chr7:77474682-77474782 + 31 7.69e-08 tcactctggt tcaaacaactctgaca ATGTCACCCT chr3:58440398-58440498 + 80 9.78e-08 ttgctctggt tcacatacctctgaGA GAGAC chr6:109424314-109424414 - 10 1.76e-07 TTGCTGTGGT TCACGTGCCTCTGATA CCACGGGAC chr13:36861901-36862001 - 59 2.16e-07 TTGCTCTGGT TCAAATGGCTGTGACA CAGAGAGCAA chr6:89008698-89008798 + 62 3.38e-07 tcactctggt tcaaatacctctgCAa aatgagacac chr1:54307324-54307424 - 6 3.89e-07 TTGCTCTGGT TCACACACCCCTGACG GATAT chr6:15896003-15896103 + 55 4.15e-07 tcactctggt tcaaaggcctctgaTG TAACCGTCTC chr10:25761899-25761999 + 31 4.42e-07 ttgctgtggt tcatacacctctggca tgatgaaaac chr21:43784183-43784283 + 65 4.42e-07 tcgctctggt tcaaacacctctgaAC ATGTTCATGC chr15:58352291-58352391 + 44 5.04e-07 tcactctggt tccacagcctctgaca tttccccctt chr4:74096442-74096542 + 67 8.16e-07 ttgctctggt taaaacgtctctgcca TATTTCCCCC chr3:43678465-43678565 + 17 2.54e-06 acaggaatct tcgaatgcccctggcc gaataaaccc chr10:23047115-23047215 - 73 3.01e-06 ATGCATTCTC TCCCATGTTTCTGACT CTGAGGGCTC chr22:30749195-30749295 + 69 3.19e-06 tcactctggt taggatgcttctgaca CTGTCACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:15464757-15464857 2.6e-10 10_[+3]_74 chr11:76911365-76911465 2.6e-10 47_[+3]_37 chr4:143362654-143362754 2.6e-10 50_[+3]_34 chr7:124965518-124965618 2.6e-10 51_[+3]_33 chr1:234261526-234261626 2.6e-10 11_[+3]_73 chr7:141588878-141588978 2.6e-10 58_[+3]_26 chr1:223313325-223313425 2.6e-10 24_[-3]_60 chr11:5367546-5367646 2.6e-10 11_[+3]_73 chr4:151038394-151038494 2.6e-10 17_[-3]_67 chr14:102550833-10255093 2.6e-10 4_[-3]_80 chr16:17590841-17590941 2.6e-10 70_[-3]_14 chr1:241696691-241696791 2.6e-10 51_[+3]_33 chr9:96904818-96904918 2.6e-10 38_[-3]_46 chr15:56783994-56784094 2.6e-10 29_[-3]_55 chr20:36083038-36083138 4.7e-10 26_[-3]_58 chr12:46258067-46258167 1e-09 64_[+3]_20 chr12:46253509-46253609 1e-09 31_[+3]_53 chr5:51099073-51099173 1.4e-09 36_[-3]_48 chr2:191599419-191599519 1.4e-09 21_[-3]_63 chr6:41292652-41292752 1.4e-09 54_[+3]_30 chr9:94402035-94402135 1.4e-09 12_[+3]_72 chr22:36426736-36426836 1.9e-09 22_[-3]_62 chr20:48139505-48139605 2.2e-09 51_[+3]_33 chr4:153537600-153537700 2.7e-09 22_[+3]_62 chr7:41750954-41751054 4.4e-09 61_[+3]_23 chr6:49722330-49722430 6.2e-09 48_[+3]_36 chr9:98049620-98049720 6.2e-09 35_[+3]_49 chr12:107033715-10703381 7.5e-09 26_[-3]_58 chr22:23439513-23439613 8.2e-09 36_[-3]_48 chr9:107675722-107675822 9.8e-09 63_[+3]_21 chr20:31505753-31505853 1.2e-08 74_[-3]_10 chr2:37917821-37917921 1.7e-08 29_[+3]_55 chr12:14924483-14924583 1.7e-08 2_[-3]_82 chr14:103427772-10342787 1.7e-08 47_[+3]_37 chr19:35165435-35165535 1.7e-08 60_[+3]_24 chr11:59548037-59548137 2.3e-08 49_[+3]_35 chr20:37559245-37559345 2.3e-08 22_[-3]_62 chr19:51786908-51787008 2.4e-08 10_[-3]_74 chr6:27136178-27136278 2.6e-08 42_[+3]_42 chr5:2156324-2156424 2.6e-08 26_[-3]_58 chr1:1135619-1135719 2.9e-08 53_[+3]_31 chr12:11621696-11621796 3.1e-08 55_[-3]_29 chr10:30425276-30425376 3.4e-08 42_[+3]_42 chr11:12379093-12379193 4.7e-08 74_[+3]_10 chr21:44845239-44845339 5.3e-08 82_[+3]_2 chr12:76350548-76350648 5.3e-08 71_[+3]_13 chr8:93874025-93874125 5.8e-08 7_[+3]_77 chr1:18421918-18422018 6.2e-08 61_[-3]_23 chr7:77474682-77474782 7.7e-08 30_[+3]_54 chr3:58440398-58440498 9.8e-08 79_[+3]_5 chr6:109424314-109424414 1.8e-07 9_[-3]_75 chr13:36861901-36862001 2.2e-07 58_[-3]_26 chr6:89008698-89008798 3.4e-07 61_[+3]_23 chr1:54307324-54307424 3.9e-07 5_[-3]_79 chr6:15896003-15896103 4.2e-07 54_[+3]_30 chr10:25761899-25761999 4.4e-07 30_[+3]_54 chr21:43784183-43784283 4.4e-07 64_[+3]_20 chr15:58352291-58352391 5e-07 43_[+3]_41 chr4:74096442-74096542 8.2e-07 66_[+3]_18 chr3:43678465-43678565 2.5e-06 16_[+3]_68 chr10:23047115-23047215 3e-06 72_[-3]_12 chr22:30749195-30749295 3.2e-06 68_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCAAAYGCCTCTGACA width=16 seqs=62 chr16:15464757-15464857 ( 11) TCAAATGCCTCTGACA 1 chr11:76911365-76911465 ( 48) TCAAATGCCTCTGACA 1 chr4:143362654-143362754 ( 51) TCAAATGCCTCTGACA 1 chr7:124965518-124965618 ( 52) TCAAATGCCTCTGACA 1 chr1:234261526-234261626 ( 12) TCAAATGCCTCTGACA 1 chr7:141588878-141588978 ( 59) TCAAATGCCTCTGACA 1 chr1:223313325-223313425 ( 25) TCAAATGCCTCTGACA 1 chr11:5367546-5367646 ( 12) TCAAATGCCTCTGACA 1 chr4:151038394-151038494 ( 18) TCAAATGCCTCTGACA 1 chr14:102550833-10255093 ( 5) TCAAATGCCTCTGACA 1 chr16:17590841-17590941 ( 71) TCAAATGCCTCTGACA 1 chr1:241696691-241696791 ( 52) TCAAATGCCTCTGACA 1 chr9:96904818-96904918 ( 39) TCAAATGCCTCTGACA 1 chr15:56783994-56784094 ( 30) TCAAATGCCTCTGACA 1 chr20:36083038-36083138 ( 27) TCAAACGCCTCTGACA 1 chr12:46258067-46258167 ( 65) TCACATGCCTCTGACA 1 chr12:46253509-46253609 ( 32) TCACATGCCTCTGACA 1 chr5:51099073-51099173 ( 37) TCAAACACCTCTGACA 1 chr2:191599419-191599519 ( 22) TCAAACACCTCTGACA 1 chr6:41292652-41292752 ( 55) TCACACGCCTCTGACA 1 chr9:94402035-94402135 ( 13) TCACACGCCTCTGACA 1 chr22:36426736-36426836 ( 23) TCCAATGCCTCTGACA 1 chr20:48139505-48139605 ( 52) TCAAGTGCCTCTGACA 1 chr4:153537600-153537700 ( 23) TCAAAAGCCTCTGACA 1 chr7:41750954-41751054 ( 62) TCAAACGTCTCTGACA 1 chr6:49722330-49722430 ( 49) TCACACACCTCTGACA 1 chr9:98049620-98049720 ( 36) TCAAATGCCTCTGCCA 1 chr12:107033715-10703381 ( 27) TCAAATGCCTGTGACA 1 chr22:23439513-23439613 ( 37) TCAAATGCCTCTGATA 1 chr9:107675722-107675822 ( 64) TCAAACGCCTCTGAGA 1 chr20:31505753-31505853 ( 75) TCAAGCACCTCTGACA 1 chr2:37917821-37917921 ( 30) TCAAACATCTCTGACA 1 chr12:14924483-14924583 ( 3) TCAAACATCTCTGACA 1 chr14:103427772-10342787 ( 48) TCAAACACTTCTGACA 1 chr19:35165435-35165535 ( 61) TCAAACACCCCTGACA 1 chr11:59548037-59548137 ( 50) TCCAAGGCCTCTGACA 1 chr20:37559245-37559345 ( 23) TCAAACACCTCTGACT 1 chr19:51786908-51787008 ( 11) TCCAGTGCCTCTGACA 1 chr6:27136178-27136278 ( 43) TTAAACGCCTCTGACA 1 chr5:2156324-2156424 ( 27) TCAAACACCTGTGACA 1 chr1:1135619-1135719 ( 54) TCAAAGGTCTCTGACA 1 chr12:11621696-11621796 ( 56) TCAAGTGCTTCTGACA 1 chr10:30425276-30425376 ( 43) TCAAAAGCTTCTGACA 1 chr11:12379093-12379193 ( 75) TCACATGCCTCGGACA 1 chr21:44845239-44845339 ( 83) TCGAACGCTTCTGACA 1 chr12:76350548-76350648 ( 72) TCAGATGCCTCTGACG 1 chr8:93874025-93874125 ( 8) TCAGATGCCTCTGGCA 1 chr1:18421918-18422018 ( 62) TCAAACGCCCCTGACT 1 chr7:77474682-77474782 ( 31) TCAAACAACTCTGACA 1 chr3:58440398-58440498 ( 80) TCACATACCTCTGAGA 1 chr6:109424314-109424414 ( 10) TCACGTGCCTCTGATA 1 chr13:36861901-36862001 ( 59) TCAAATGGCTGTGACA 1 chr6:89008698-89008798 ( 62) TCAAATACCTCTGCAA 1 chr1:54307324-54307424 ( 6) TCACACACCCCTGACG 1 chr6:15896003-15896103 ( 55) TCAAAGGCCTCTGATG 1 chr10:25761899-25761999 ( 31) TCATACACCTCTGGCA 1 chr21:43784183-43784283 ( 65) TCAAACACCTCTGAAC 1 chr15:58352291-58352391 ( 44) TCCACAGCCTCTGACA 1 chr4:74096442-74096542 ( 67) TAAAACGTCTCTGCCA 1 chr3:43678465-43678565 ( 17) TCGAATGCCCCTGGCC 1 chr10:23047115-23047215 ( 73) TCCCATGTTTCTGACT 1 chr22:30749195-30749295 ( 69) TAGGATGCTTCTGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.9821 E= 6.6e-171 -1260 -1260 -1260 183 -312 212 -1260 -412 163 -144 -218 -1260 146 -44 -218 -412 169 -376 -144 -1260 -253 76 -218 92 -12 -1260 176 -1260 -412 199 -376 -153 -1260 204 -1260 -153 -1260 -177 -1260 174 -1260 212 -218 -1260 -1260 -1260 -376 181 -1260 -1260 219 -1260 169 -218 -218 -1260 -312 201 -277 -253 163 -277 -218 -253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 62 E= 6.6e-171 0.000000 0.000000 0.000000 1.000000 0.032258 0.951613 0.000000 0.016129 0.870968 0.080645 0.048387 0.000000 0.774194 0.161290 0.048387 0.016129 0.903226 0.016129 0.080645 0.000000 0.048387 0.370968 0.048387 0.532258 0.258065 0.000000 0.741935 0.000000 0.016129 0.870968 0.016129 0.096774 0.000000 0.903226 0.000000 0.096774 0.000000 0.064516 0.000000 0.935484 0.000000 0.951613 0.048387 0.000000 0.000000 0.000000 0.016129 0.983871 0.000000 0.000000 1.000000 0.000000 0.903226 0.048387 0.048387 0.000000 0.032258 0.887097 0.032258 0.048387 0.870968 0.032258 0.048387 0.048387 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAAAYGCCTCTGACA MEME-3 regular expression -------------------------------------------------------------------------------- TCAAA[TC][GA]CCTCTGACA -------------------------------------------------------------------------------- Time 1310.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:172537940-172538040 5.43e-01 100 chr7:102988270-102988370 2.51e-01 100 chr6:3054582-3054682 3.76e-05 73_[-1(8.78e-08)]_9 chr10:6033694-6033794 2.25e-01 100 chr16:85528494-85528594 4.04e-01 100 chr11:95153481-95153581 5.91e-01 100 chr9:98575381-98575481 8.07e-01 100 chr15:56783994-56784094 8.09e-24 29_[-3(2.64e-10)]_[-1(3.11e-10)]_3_\ [-2(1.27e-14)]_5 chr7:16269422-16269522 5.33e-01 100 chr8:105321956-105322056 1.24e-01 100 chr6:146894364-146894464 3.01e-01 100 chr1:166529378-166529478 4.33e-06 26_[+1(4.03e-09)]_56 chr1:65481193-65481293 3.91e-01 100 chr10:3894697-3894797 2.72e-01 100 chr7:16419068-16419168 1.25e-04 52_[-1(1.79e-07)]_30 chr2:6887832-6887932 7.29e-01 100 chr12:32258358-32258458 4.51e-01 100 chr13:91695927-91696027 5.68e-01 100 chr7:106481917-106482017 9.39e-01 100 chr6:43926300-43926400 1.45e-01 100 chr12:57666402-57666502 1.50e-04 27_[+1(9.75e-07)]_55 chr18:35104714-35104814 7.21e-01 100 chr10:79084510-79084610 2.80e-01 100 chr9:37119774-37119874 9.79e-01 100 chr6:89008698-89008798 1.95e-21 11_[+2(3.97e-14)]_3_[+1(2.28e-11)]_\ [+3(3.38e-07)]_23 chr6:30615293-30615393 6.93e-01 100 chr1:26408451-26408551 1.48e-01 100 chr4:165426817-165426917 1.63e-03 35_[-1(2.20e-07)]_47 chr2:236073194-236073294 6.44e-01 100 chr1:200886534-200886634 6.70e-04 30_[+1(1.27e-07)]_52 chr12:75722707-75722807 1.97e-01 100 chr5:76319506-76319606 7.45e-01 100 chr1:17360286-17360386 6.17e-06 8_[+1(2.93e-09)]_74 chr3:32048631-32048731 9.84e-01 100 chr21:5222693-5222793 6.49e-02 10_[+1(4.03e-05)]_72 chr9:136789477-136789577 9.86e-06 29_[+1(3.15e-08)]_53 chr1:111767030-111767130 8.64e-01 100 chr17:17849936-17850036 2.07e-01 100 chr10:5446618-5446718 6.25e-01 100 chr18:3603138-3603238 3.35e-01 100 chr12:89235581-89235681 9.30e-01 100 chr20:37559245-37559345 2.11e-24 22_[-3(2.25e-08)]_[-1(7.63e-11)]_3_\ [-2(1.52e-16)]_12 chr1:16172983-16173083 4.26e-01 100 chr9:96904818-96904918 5.31e-14 38_[-3(2.64e-10)]_[-1(1.62e-10)]_28 chr9:129790233-129790333 7.36e-01 100 chr6:109877337-109877437 7.33e-01 100 chr5:149943233-149943333 5.60e-01 100 chr6:31959205-31959305 4.73e-02 33_[+2(8.70e-05)]_38 chr20:401643-401743 4.90e-01 100 chr6:28354148-28354248 1.09e-02 21_[-1(1.84e-05)]_61 chr22:19144801-19144901 9.85e-01 100 chr5:82420001-82420101 5.38e-01 100 chr1:16892788-16892888 7.00e-02 100 chr2:237465232-237465332 5.25e-01 100 chr6:28881246-28881346 9.67e-01 100 chr7:138214866-138214966 1.50e-04 58_[-1(3.72e-08)]_24 chr6:14972678-14972778 3.35e-01 100 chr22:40177241-40177341 2.59e-01 100 chr1:241696691-241696791 2.91e-24 1_[+2(1.06e-16)]_3_[+1(1.30e-08)]_\ [+3(2.64e-10)]_33 chr14:56172154-56172254 7.87e-01 100 chr17:59729259-59729359 8.16e-04 [-1(1.67e-07)]_82 chr9:98833390-98833490 1.30e-01 100 chr4:78599946-78600046 1.11e-01 7_[-2(8.70e-05)]_64 chr19:21601218-21601318 5.95e-01 100 chr6:39137206-39137306 6.23e-02 100 chr6:14452173-14452273 1.13e-01 100 chr19:44588698-44588798 2.90e-02 100 chr3:171967210-171967310 9.15e-01 100 chr17:41738097-41738197 7.73e-01 100 chr17:18223121-18223221 5.27e-20 35_[+2(2.16e-16)]_3_[+1(7.63e-11)]_\ 15 chr19:7562758-7562858 4.44e-01 100 chr11:12379093-12379193 5.85e-19 25_[+2(3.18e-11)]_2_[+1(7.63e-11)]_\ [+3(4.72e-08)]_10 chr12:91398033-91398133 2.15e-01 100 chr12:46484419-46484519 5.53e-01 100 chr1:160550515-160550615 4.05e-01 100 chr16:17590841-17590941 3.99e-07 70_[-3(2.64e-10)]_14 chr7:148697177-148697277 7.78e-01 100 chr21:38830980-38831080 1.17e-01 100 chr1:167825544-167825644 8.52e-01 100 chr6:32184305-32184405 1.43e-01 100 chr12:111413143-11141324 8.47e-01 100 chr14:102550833-10255093 8.23e-24 4_[-3(2.64e-10)]_[-1(4.52e-10)]_3_\ [-2(8.92e-15)]_30 chr8:124447114-124447214 4.10e-01 100 chr8:18122619-18122719 4.22e-02 100 chr3:184016370-184016470 2.86e-01 100 chr12:68200732-68200832 5.63e-03 100 chr5:132666615-132666715 4.76e-05 82_[-1(7.55e-08)] chr2:151908314-151908414 3.85e-01 100 chr12:127157314-12715741 9.64e-01 100 chr11:35580029-35580129 6.53e-01 100 chr15:75065912-75066012 6.65e-01 100 chr1:25361257-25361357 9.33e-01 100 chr19:35165435-35165535 1.37e-14 42_[+1(7.63e-11)]_[+3(1.71e-08)]_24 chr1:28258717-28258817 5.60e-01 100 chr12:122064220-12206432 5.45e-01 100 chr1:99640797-99640897 5.07e-01 100 chr9:107675722-107675822 4.58e-22 13_[+2(3.05e-13)]_3_[+1(2.28e-11)]_\ [+3(9.78e-09)]_21 chr7:65369762-65369862 3.79e-06 75_[+1(2.10e-09)]_7 chr8:93874025-93874125 6.71e-05 7_[+3(5.80e-08)]_77 chr18:9038191-9038291 7.81e-01 100 chr2:43190637-43190737 2.11e-02 100 chr1:202805858-202805958 1.55e-03 75_[-1(2.69e-07)]_7 chr1:112902191-112902291 3.06e-05 29_[-1(8.11e-09)]_53 chr18:105722-105822 3.85e-03 52_[+1(2.45e-06)]_30 chr15:34336374-34336474 1.02e-02 63_[-1(5.13e-06)]_19 chr4:151038394-151038494 3.33e-21 17_[-3(2.64e-10)]_[-1(1.00e-11)]_2_\ [-2(2.01e-10)]_18 chr13:89940572-89940672 7.10e-01 100 chr1:18421918-18422018 6.54e-11 61_[-3(6.23e-08)]_[-1(1.62e-10)]_5 chr10:17662655-17662755 4.43e-01 100 chr20:35119896-35119996 3.53e-01 100 chr6:14105458-14105558 4.90e-01 100 chr2:177689465-177689565 6.20e-01 100 chr16:84732640-84732740 2.72e-01 100 chr20:38947933-38948033 4.63e-01 100 chrX:147877408-147877508 6.72e-01 100 chr6:15896003-15896103 2.06e-25 4_[+2(2.49e-18)]_3_[+1(2.28e-11)]_\ [+3(4.15e-07)]_30 chr17:16244161-16244261 2.65e-05 8_[+1(2.88e-08)]_74 chr4:70892121-70892221 9.91e-01 100 chr3:4899082-4899182 2.95e-01 100 chr9:94402035-94402135 1.26e-05 12_[+3(1.44e-09)]_72 chr4:5014226-5014326 2.01e-03 29_[-3(9.32e-06)]_55 chr9:94278786-94278886 7.81e-01 100 chr16:10405466-10405566 5.25e-01 100 chr14:103427772-10342787 1.72e-12 29_[+1(7.63e-11)]_[+3(1.71e-08)]_37 chr17:8172931-8173031 7.14e-01 100 chr5:56089341-56089441 6.14e-01 100 chr21:43784183-43784283 3.36e-25 14_[+2(8.84e-18)]_3_[+1(1.00e-11)]_\ [+3(4.42e-07)]_20 chr11:44530061-44530161 6.26e-02 57_[-3(4.18e-05)]_27 chr10:84525075-84525175 2.49e-03 52_[+1(1.89e-06)]_30 chr4:126702479-126702579 1.54e-02 100 chr13:80828755-80828855 8.59e-01 100 chr6:151101964-151102064 1.83e-01 100 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******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali ********************************************************************************