Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/DDX20.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
Database contains 5321 sequences, 2660500 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ATGGAGTH 8 ATGGAGTC
AACCAGAG 8 AACCAGAG
CCTSTGAC 8 CCTCTGAC
CYGGGTAA 8 CTGGGTAA
AATRAGGC 8 AATAAGGC
CTTRAATA 8 CTTGAATA
AANATGG 7 AAAATGG
CMCAGKA 7 CCCAGGA
GGTYTCA 7 GGTCTCA
CTTSCTTC 8 CTTGCTTC
AWTCCCAG 8 ATTCCCAG
KATCTCTY 8 GATCTCTT
AAAMHAAA 8 AAAAAAAA
CATKCTAA 8 CATGCTAA
CACGTG 6 CACGTG
CAGCYTGG 8 CAGCTTGG
CWGATAA 7 CAGATAA
CAMAYG 6 CAAATG
CYGYCTC 7 CTGTCTC
GACMTAA 7 GACATAA
ATAATTTY 8 ATAATTTT
CTYTGGGA 8 CTTTGGGA
GCTGGGY 7 GCTGGGC
CTGTACTA 8 CTGTACTA
TACAYAGA 8 TACACAGA
ASAAAAAT 8 AGAAAAAT
AAATRT 6 AAATGT
RTGACTCA 8 ATGACTCA
CCYTGTTC 8 CCTTGTTC
AAKGCAG 7 AAGGCAG
ACCACRGC 8 ACCACAGC
SACAGTGA 8 GACAGTGA
GTTGGGGS 8 GTTGGGGC
GCCACYGC 8 GCCACTGC
AGMTAAGG 8 AGCTAAGG
GAAAGAAR 8 GAAAGAAA
ACTGMAAC 8 ACTGCAAC
GAGGTYA 7 GAGGTCA
CCACCAYG 8 CCACCATG
GCCATTDC 8 GCCATTGC
CYTTTCCC 8 CTTTTCCC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.280 C 0.220 G 0.220 T 0.280

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GAAAGAAR DREME-36 chrUn_GL000219v1 - 92292 92299 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 - 183329 183336 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr20 - 370095 370102 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 + 1294433 1294440 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 1610062 1610069 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 1996344 1996351 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 2856898 2856905 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 - 3448957 3448964 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 - 3448957 3448964 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 - 3653375 3653382 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr11 - 3871628 3871635 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 4320328 4320335 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 - 4540247 4540254 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr3 - 4740874 4740881 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr7 - 4894211 4894218 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr3 + 4898958 4898965 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr20 - 5080327 5080334 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr7 - 5457993 5458000 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 + 5560514 5560521 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 + 7959575 7959582 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 8169784 8169791 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr21 - 8420185 8420192 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 + 8915127 8915134 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr18 + 9010390 9010397 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 + 9076678 9076685 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 9076701 9076708 2.35e-05 0.151 gaaaGAAA
GAAAGAAR DREME-36 chr8 + 9643141 9643148 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr2 - 9680489 9680496 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 + 9875094 9875101 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 11201836 11201843 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 11201836 11201843 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chrX + 11355396 11355403 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chrX + 11355396 11355403 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chrX + 11376022 11376029 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 11889758 11889765 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 + 11889762 11889769 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 + 11889766 11889773 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 + 11889770 11889777 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 + 11889774 11889781 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 - 11909989 11909996 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr2 - 12106807 12106814 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 + 13731416 13731423 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr7 + 13849678 13849685 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849678 13849685 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849695 13849702 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849695 13849702 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849699 13849706 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849699 13849706 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849764 13849771 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849764 13849771 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849789 13849796 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849789 13849796 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849801 13849808 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 13849801 13849808 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 - 14001504 14001511 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 - 14275327 14275334 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 14393972 14393979 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 14582072 14582079 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 14587655 14587662 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 14743829 14743836 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr3 + 15053008 15053015 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 + 15300653 15300660 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr19 + 15300653 15300660 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr19 + 15300942 15300949 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr4 - 15521624 15521631 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 15831858 15831865 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 16109061 16109068 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 16109061 16109068 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 16236239 16236246 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 16236458 16236465 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr3 + 16304461 16304468 2.35e-05 0.151 gaaAGAAA
GAAAGAAR DREME-36 chr22 + 16608831 16608838 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 17013858 17013865 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 17013858 17013865 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 17082812 17082819 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 17082812 17082819 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 17082816 17082823 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 17082816 17082823 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 - 17673353 17673360 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 18242808 18242815 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr19 - 18364120 18364127 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 - 18364132 18364139 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 18430014 18430021 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 18430427 18430434 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr9 + 19161548 19161555 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr9 + 19161552 19161559 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr9 + 19161556 19161563 2.35e-05 0.151 gaaagaaA
GAAAGAAR DREME-36 chr22 - 19543081 19543088 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 - 19543110 19543117 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 + 19681680 19681687 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr11 - 19978721 19978728 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 - 20072318 20072325 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 21022866 21022873 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 21022949 21022956 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 21028185 21028192 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr10 + 21079253 21079260 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 21454228 21454235 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 - 21600687 21600694 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 + 21600717 21600724 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr19 - 21601254 21601261 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 + 21686466 21686473 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 21791380 21791387 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 + 21791384 21791391 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 21994702 21994709 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 22355505 22355512 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 + 22489834 22489841 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr14 + 22497752 22497759 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 22641358 22641365 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr16 - 22641424 22641431 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr7 - 22667592 22667599 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 - 23024849 23024856 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr14 + 23146412 23146419 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr14 - 23164602 23164609 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr14 + 23164679 23164686 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 + 23536106 23536113 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr12 - 23559841 23559848 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chrX + 23844644 23844651 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 23862827 23862834 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chrX + 23884292 23884299 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 23980556 23980563 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 24273033 24273040 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 24765782 24765789 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 24765803 24765810 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 24765807 24765814 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 + 25117810 25117817 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 26050300 26050307 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr2 + 26243743 26243750 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 26304685 26304692 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 26304689 26304696 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 26311720 26311727 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 26311720 26311727 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 26685748 26685755 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr12 + 26689470 26689477 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 26985245 26985252 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr2 + 27007539 27007546 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 - 27237395 27237402 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 27280423 27280430 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 27287895 27287902 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 27287899 27287906 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr1 - 27509569 27509576 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 27777627 27777634 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 27777762 27777769 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 27777774 27777781 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr16 + 28164441 28164448 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 28364813 28364820 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr19 + 28522072 28522079 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 28755800 28755807 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755819 28755826 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755839 28755846 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755843 28755850 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755847 28755854 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755857 28755864 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755861 28755868 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755865 28755872 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755869 28755876 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755873 28755880 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755877 28755884 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755881 28755888 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755885 28755892 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755889 28755896 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755893 28755900 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755897 28755904 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755901 28755908 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755910 28755917 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755927 28755934 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 + 28755963 28755970 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr6 - 28758755 28758762 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 28960996 28961003 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 + 28971073 28971080 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 + 29643401 29643408 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 29646841 29646848 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 29647416 29647423 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 29647416 29647423 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 + 29649142 29649149 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 + 29654612 29654619 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr21 + 29654616 29654623 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr21 + 29654620 29654627 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr21 + 29654630 29654637 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr21 + 29654634 29654641 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr21 + 29654638 29654645 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr2 + 30290588 30290595 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 30323399 30323406 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 + 30419016 30419023 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr22 - 30740539 30740546 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 - 30800977 30800984 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 + 30872601 30872608 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr12 + 31315672 31315679 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31525693 31525700 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr18 + 31697662 31697669 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr18 - 31822208 31822215 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958215 31958222 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958215 31958222 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958224 31958231 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958228 31958235 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958232 31958239 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958243 31958250 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958247 31958254 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958251 31958258 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958273 31958280 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958277 31958284 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958329 31958336 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 31958333 31958340 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 32184671 32184678 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 32291595 32291602 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr1 - 32311992 32311999 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr5 + 32391086 32391093 2.35e-05 0.151 gaaagaaa
GAAAGAAR DREME-36 chr7 + 32494924 32494931 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 + 32985897 32985904 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr10 - 33056858 33056865 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 - 33212658 33212665 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 33289545 33289552 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 33289545 33289552 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr21 + 33300582 33300589 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr8 - 33484070 33484077 2.35e-05 0.151 GAAAGAAA
GAAAGAAR DREME-36 chr6 + 34719554 34719561 2.35e-05 0.151 gaaagaaa
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GAAAGAAR DREME-36 chr10 + 50579770 50579777 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr19 - 51548346 51548353 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr14 + 53279395 53279402 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr3 - 53355298 53355305 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr12 + 53437902 53437909 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr4 - 53479350 53479357 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr6 - 53630115 53630122 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr5 + 54294511 54294518 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr2 - 54574796 54574803 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr1 - 54637048 54637055 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr4 - 55728805 55728812 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr5 + 56157041 56157048 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr5 + 56157041 56157048 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr12 + 56361015 56361022 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr15 + 56784215 56784222 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr3 - 58436563 58436570 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr8 - 58660813 58660820 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr8 - 58672651 58672658 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr1 + 58883949 58883956 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr17 - 59290864 59290871 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr17 - 60103101 60103108 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr13 - 60109223 60109230 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr11 - 60193762 60193769 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr17 - 60669757 60669764 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr10 - 60962798 60962805 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr10 + 60977470 60977477 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr15 + 63390784 63390791 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr11 + 63689388 63689395 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr17 - 64449369 64449376 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr15 + 65733697 65733704 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chrX - 66150338 66150345 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr7 - 66619873 66619880 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr15 + 66895794 66895801 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr4 - 68282373 68282380 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr10 + 68792122 68792129 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr15 - 68949374 68949381 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr9 - 69189304 69189311 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr9 - 69764051 69764058 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr12 + 70090967 70090974 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr10 + 70174664 70174671 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr1 - 70461346 70461353 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr11 - 72434772 72434779 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr4 - 73704643 73704650 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr15 - 75871769 75871776 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr12 + 76194283 76194290 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr7 + 76373731 76373738 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr11 - 78339256 78339263 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr11 - 78339256 78339263 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr5 + 78587885 78587892 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr8 + 79691875 79691882 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr17 + 80756332 80756339 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr16 - 81457148 81457155 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr6 + 81937784 81937791 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr5 - 82418010 82418017 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr1 - 84118334 84118341 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr6 + 84270407 84270414 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr6 + 84270407 84270414 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr15 - 84725194 84725201 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr16 - 85535826 85535833 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr1 + 86461419 86461426 4.18e-05 0.188 GAaagaag
GAAAGAAR DREME-36 chr16 + 87387923 87387930 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr14 + 88024384 88024391 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr15 + 88538101 88538108 4.18e-05 0.188 gaaagaaG
GAAAGAAR DREME-36 chr15 + 88540596 88540603 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr15 + 88929359 88929366 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr6 + 90457708 90457715 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr6 + 90457708 90457715 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr13 + 90488221 90488228 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr5 + 90605108 90605115 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr12 + 92570609 92570616 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr9 - 93067195 93067202 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr12 - 93098450 93098457 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr12 + 94050330 94050337 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr11 - 95100474 95100481 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr11 + 95610231 95610238 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr5 + 95707811 95707818 4.18e-05 0.188 gaaagaag
GAAAGAAR DREME-36 chr5 - 95934577 95934584 4.18e-05 0.188 GAAAGAAG
GAAAGAAR DREME-36 chr10 - 96129608 96129615 4.18e-05 0.188 GAAAGAAG
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_47 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif GAAAGAAR /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/DDX20.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_47
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/DDX20.IDR0.05.filt.narrowPeaksummitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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