# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 5321 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Wed Nov 22 12:43:30 PST 2017) # negatives: 5321 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeK562eGFPComparisons/DDX20.IDR0.05.filt.narrowPeak.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Nov 22 12:43:30 PST 2017) # host: kali # when: Wed Nov 22 13:05:27 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.280 C 0.219 G 0.220 T 0.280 MOTIF ATGGAGTH DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGGAGTH DACTCCAT 1066 47 4.3e-276 1.8e-271 # ATGGAGTC GACTCCAT 601 15 6.3e-164 2.7e-159 # ATGGAGTT AACTCCAT 426 20 4.7e-104 2.0e-099 # ATGGAGTA TACTCCAT 49 12 9.2e-007 3.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 1083 E= 1.8e-271 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.045245 0.561404 0.000000 0.393352 MOTIF AACCAGAG DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AACCAGAG CTCTGGTT 400 30 6.6e-087 2.8e-082 # AACCAGAG CTCTGGTT 400 30 6.6e-087 2.8e-082 letter-probability matrix: alength= 4 w= 8 nsites= 401 E= 2.8e-082 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCTSTGAC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CCTSTGAC GTCASAGG 393 35 8.8e-081 3.8e-076 # CCTCTGAC GTCAGAGG 321 21 2.6e-072 1.1e-067 # CCTGTGAC GTCACAGG 73 14 3.6e-011 1.6e-006 letter-probability matrix: alength= 4 w= 8 nsites= 395 E= 3.8e-076 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.812658 0.187342 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CYGGGTAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CYGGGTAA TTACCCRG 309 10 3.4e-080 1.4e-075 # CTGGGTAA TTACCCAG 301 10 8.4e-078 3.6e-073 # CCGGGTAA TTACCCGG 8 0 3.9e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 309 E= 1.4e-075 0.000000 1.000000 0.000000 0.000000 0.000000 0.025890 0.000000 0.974110 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATRAGGC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AATRAGGC GCCTYATT 308 34 2.9e-058 1.3e-053 # AATAAGGC GCCTTATT 154 13 1.8e-032 7.5e-028 # AATGAGGC GCCTCATT 154 21 7.4e-027 3.1e-022 letter-probability matrix: alength= 4 w= 8 nsites= 309 E= 1.3e-053 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.501618 0.000000 0.498382 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTTRAATA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTTRAATA TATTYAAG 340 50 3.4e-056 1.4e-051 # CTTGAATA TATTCAAG 289 32 1.3e-054 5.7e-050 # CTTAAATA TATTTAAG 53 18 1.8e-005 7.8e-001 letter-probability matrix: alength= 4 w= 8 nsites= 343 E= 1.4e-051 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.154519 0.000000 0.845481 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AANATGG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AANATGG CCATNTT 840 363 1.5e-049 6.5e-045 # AAAATGG CCATTTT 327 138 8.0e-020 3.4e-015 # AAGATGG CCATCTT 260 110 6.6e-016 2.8e-011 # AACATGG CCATGTT 192 67 8.8e-016 3.7e-011 # AATATGG CCATATT 103 53 3.4e-005 1.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 917 E= 6.5e-045 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.374046 0.214831 0.296619 0.114504 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CMCAGKA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CMCAGKA TMCTGKG 658 286 7.6e-038 3.2e-033 # CCCAGGA TCCTGGG 248 86 3.3e-020 1.4e-015 # CCCAGTA TACTGGG 193 57 3.7e-019 1.6e-014 # CACAGTA TACTGTG 135 67 7.8e-007 3.3e-002 # CACAGGA TCCTGTG 117 81 5.9e-003 2.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 701 E= 3.2e-033 0.000000 1.000000 0.000000 0.000000 0.368046 0.631954 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.526391 0.473609 1.000000 0.000000 0.000000 0.000000 MOTIF GGTYTCA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GGTYTCA TGARACC 450 152 2.2e-037 9.2e-033 # GGTCTCA TGAGACC 269 72 5.3e-029 2.2e-024 # GGTTTCA TGAAACC 186 83 9.2e-011 3.9e-006 letter-probability matrix: alength= 4 w= 7 nsites= 459 E= 9.2e-033 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.590414 0.000000 0.409586 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTSCTTC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CTTSCTTC GAAGSAAG 227 67 2.4e-022 1.0e-017 # CTTGCTTC GAAGCAAG 143 29 7.0e-020 3.0e-015 # CTTCCTTC GAAGGAAG 86 38 8.7e-006 3.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 232 E= 1.0e-017 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.387931 0.612069 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AWTCCCAG DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AWTCCCAG CTGGGAWT 172 41 6.2e-021 2.6e-016 # ATTCCCAG CTGGGAAT 99 25 5.0e-012 2.1e-007 # AATCCCAG CTGGGATT 73 16 3.1e-010 1.3e-005 letter-probability matrix: alength= 4 w= 8 nsites= 172 E= 2.6e-016 1.000000 0.000000 0.000000 0.000000 0.424419 0.000000 0.000000 0.575581 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF KATCTCTY DREME-12 # Word RC Word Pos Neg P-value E-value # BEST KATCTCTY RAGAGATM 215 68 1.1e-019 4.5e-015 # GATCTCTC GAGAGATC 58 11 3.4e-009 1.4e-004 # GATCTCTT AAGAGATC 84 27 2.3e-008 9.9e-004 # TATCTCTC GAGAGATA 31 10 7.1e-004 3.0e+001 # TATCTCTT AAGAGATA 43 20 2.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 217 E= 4.5e-015 0.000000 0.000000 0.654378 0.345622 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.410138 0.000000 0.589862 MOTIF AAAMHAAA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AAAMHAAA TTTDKTTT 633 365 2.2e-019 9.2e-015 # AAAACAAA TTTGTTTT 155 77 1.3e-007 5.3e-003 # AAACCAAA TTTGGTTT 117 51 1.5e-007 6.5e-003 # AAAATAAA TTTATTTT 120 57 1.0e-006 4.4e-002 # AAAAAAAA TTTTTTTT 207 128 6.9e-006 2.9e-001 # AAACAAAA TTTTGTTT 139 81 4.7e-005 2.0e+000 # AAACTAAA TTTAGTTT 72 43 4.2e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 743 E= 9.2e-015 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625841 0.374159 0.000000 0.000000 0.426649 0.325707 0.000000 0.247645 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATKCTAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CATKCTAA TTAGMATG 132 30 5.6e-017 2.3e-012 # CATGCTAA TTAGCATG 82 18 2.5e-011 1.1e-006 # CATTCTAA TTAGAATG 50 12 5.7e-007 2.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 132 E= 2.3e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.621212 0.378788 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACGTG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CACGTG CACGTG 111 21 1.9e-016 8.0e-012 # CACGTG CACGTG 111 21 1.9e-016 8.0e-012 letter-probability matrix: alength= 4 w= 6 nsites= 113 E= 8.0e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAGCYTGG DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CAGCYTGG CCARGCTG 199 70 3.8e-016 1.6e-011 # CAGCTTGG CCAAGCTG 100 31 4.6e-010 1.9e-005 # CAGCCTGG CCAGGCTG 100 39 9.8e-008 4.1e-003 letter-probability matrix: alength= 4 w= 8 nsites= 201 E= 1.6e-011 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.497512 0.000000 0.502488 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CWGATAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CWGATAA TTATCWG 328 160 2.8e-015 1.2e-010 # CTGATAA TTATCAG 161 67 1.4e-010 5.7e-006 # CAGATAA TTATCTG 177 96 3.9e-007 1.6e-002 letter-probability matrix: alength= 4 w= 7 nsites= 344 E= 1.2e-010 0.000000 1.000000 0.000000 0.000000 0.523256 0.000000 0.000000 0.476744 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAMAYG DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CAMAYG CRTKTG 1040 739 2.9e-015 1.2e-010 # CACATG CATGTG 400 274 3.1e-007 1.3e-002 # CAAACG CGTTTG 116 56 2.3e-006 9.8e-002 # CACACG CGTGTG 94 44 1.1e-005 4.7e-001 # CAAATG CATTTG 483 390 5.7e-004 2.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 1138 E= 1.2e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.548330 0.451670 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.183656 0.000000 0.816344 0.000000 0.000000 1.000000 0.000000 MOTIF CYGYCTC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CYGYCTC GAGRCRG 418 230 1.2e-014 4.9e-010 # CTGTCTC GAGACAG 201 110 9.2e-008 3.8e-003 # CCGTCTC GAGACGG 45 10 9.7e-007 4.0e-002 # CTGCCTC GAGGCAG 154 95 9.4e-005 3.9e+000 # CCGCCTC GAGGCGG 42 16 4.2e-004 1.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 451 E= 4.9e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.192905 0.000000 0.807095 0.000000 0.000000 1.000000 0.000000 0.000000 0.443459 0.000000 0.556541 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GACMTAA DREME-20 # Word RC Word Pos Neg P-value E-value # BEST GACMTAA TTAKGTC 232 99 4.0e-014 1.7e-009 # GACCTAA TTAGGTC 109 41 1.0e-008 4.4e-004 # GACATAA TTATGTC 123 58 6.3e-007 2.6e-002 letter-probability matrix: alength= 4 w= 7 nsites= 232 E= 1.7e-009 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.530172 0.469828 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATAATTTY DREME-21 # Word RC Word Pos Neg P-value E-value # BEST ATAATTTY RAAATTAT 144 44 4.1e-014 1.7e-009 # ATAATTTT AAAATTAT 112 31 2.1e-012 8.9e-008 # ATAATTTC GAAATTAT 37 13 4.6e-004 1.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 153 E= 1.7e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.248366 0.000000 0.751634 MOTIF CTYTGGGA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST CTYTGGGA TCCCARAG 143 44 6.4e-014 2.7e-009 # CTTTGGGA TCCCAAAG 103 28 1.1e-011 4.5e-007 # CTCTGGGA TCCCAGAG 40 16 9.0e-004 3.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 144 E= 2.7e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.277778 0.000000 0.722222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTGGGY DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GCTGGGY RCCCAGC 247 120 7.0e-012 2.9e-007 # GCTGGGC GCCCAGC 138 61 1.8e-008 7.7e-004 # GCTGGGT ACCCAGC 112 59 2.7e-005 1.1e+000 letter-probability matrix: alength= 4 w= 7 nsites= 253 E= 2.9e-007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.549407 0.000000 0.450593 MOTIF CTGTACTA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CTGTACTA TAGTACAG 51 4 9.2e-012 3.8e-007 # CTGTACTA TAGTACAG 51 4 9.2e-012 3.8e-007 letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 3.8e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TACAYAGA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST TACAYAGA TCTRTGTA 95 26 8.0e-011 3.3e-006 # TACACAGA TCTGTGTA 54 13 2.1e-007 8.6e-003 # TACATAGA TCTATGTA 41 13 8.4e-005 3.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 3.3e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.568421 0.000000 0.431579 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ASAAAAAT DREME-26 # Word RC Word Pos Neg P-value E-value # BEST ASAAAAAT ATTTTTST 164 68 8.0e-011 3.3e-006 # AGAAAAAT ATTTTTCT 106 37 2.6e-009 1.1e-004 # ACAAAAAT ATTTTTGT 59 32 2.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 168 E= 3.3e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.357143 0.642857 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAATRT DREME-27 # Word RC Word Pos Neg P-value E-value # BEST AAATRT AYATTT 719 515 3.7e-010 1.5e-005 # AAATGT ACATTT 404 292 6.5e-006 2.7e-001 # AAATAT ATATTT 345 246 1.6e-005 6.7e-001 letter-probability matrix: alength= 4 w= 6 nsites= 797 E= 1.5e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.468005 0.000000 0.531995 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF RTGACTCA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST RTGACTCA TGAGTCAY 101 31 3.0e-010 1.2e-005 # ATGACTCA TGAGTCAT 61 19 1.3e-006 5.2e-002 # GTGACTCA TGAGTCAC 42 12 2.5e-005 1.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 104 E= 1.2e-005 0.596154 0.000000 0.403846 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCYTGTTC DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CCYTGTTC GAACARGG 120 47 5.8e-009 2.4e-004 # CCTTGTTC GAACAAGG 76 26 3.3e-007 1.4e-002 # CCCTGTTC GAACAGGG 44 21 2.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 2.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.377049 0.000000 0.622951 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAKGCAG DREME-30 # Word RC Word Pos Neg P-value E-value # BEST AAKGCAG CTGCMTT 323 201 2.6e-008 1.1e-003 # AAGGCAG CTGCCTT 182 116 6.3e-005 2.6e+000 # AATGCAG CTGCATT 143 87 1.2e-004 4.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 327 E= 1.1e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.556575 0.443425 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACCACRGC DREME-31 # Word RC Word Pos Neg P-value E-value # BEST ACCACRGC GCYGTGGT 58 13 2.9e-008 1.2e-003 # ACCACAGC GCTGTGGT 50 13 1.4e-006 5.8e-002 # ACCACGGC GCCGTGGT 8 0 3.9e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.862069 0.000000 0.137931 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF SACAGTGA DREME-32 # Word RC Word Pos Neg P-value E-value # BEST SACAGTGA TCACTGTS 103 39 3.1e-008 1.3e-003 # GACAGTGA TCACTGTC 54 15 1.2e-006 5.0e-002 # CACAGTGA TCACTGTG 49 25 3.4e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 1.3e-003 0.000000 0.475728 0.524272 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTTGGGGS DREME-33 # Word RC Word Pos Neg P-value E-value # BEST GTTGGGGS SCCCCAAC 71 20 3.2e-008 1.3e-003 # GTTGGGGC GCCCCAAC 37 8 7.4e-006 3.1e-001 # GTTGGGGG CCCCCAAC 34 12 8.0e-004 3.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 1.3e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.521127 0.478873 0.000000 MOTIF GCCACYGC DREME-34 # Word RC Word Pos Neg P-value E-value # BEST GCCACYGC GCRGTGGC 49 10 1.3e-007 5.2e-003 # GCCACTGC GCAGTGGC 37 10 4.8e-005 2.0e+000 # GCCACCGC GCGGTGGC 12 0 2.4e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 5.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.244898 0.000000 0.755102 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGMTAAGG DREME-35 # Word RC Word Pos Neg P-value E-value # BEST AGMTAAGG CCTTAKCT 83 29 1.4e-007 5.9e-003 # AGATAAGG CCTTATCT 37 11 1.1e-004 4.4e+000 # AGCTAAGG CCTTAGCT 46 18 3.0e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 5.9e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.458824 0.541176 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GAAAGAAR DREME-36 # Word RC Word Pos Neg P-value E-value # BEST GAAAGAAR YTTCTTTC 193 106 1.9e-007 7.8e-003 # GAAAGAAA TTTCTTTC 107 54 1.6e-005 6.4e-001 # GAAAGAAG CTTCTTTC 89 53 1.5e-003 6.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 208 E= 7.8e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.576923 0.000000 0.423077 0.000000 MOTIF ACTGMAAC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST ACTGMAAC GTTKCAGT 73 24 2.9e-007 1.2e-002 # ACTGAAAC GTTTCAGT 35 7 7.3e-006 3.0e-001 # ACTGCAAC GTTGCAGT 38 17 3.2e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.2e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.479452 0.520548 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGGTYA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST GAGGTYA TRACCTC 224 131 3.0e-007 1.2e-002 # GAGGTCA TGACCTC 128 77 2.0e-004 8.2e+000 # GAGGTTA TAACCTC 98 54 2.0e-004 8.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 228 E= 1.2e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.565789 0.000000 0.434211 1.000000 0.000000 0.000000 0.000000 MOTIF CCACCAYG DREME-39 # Word RC Word Pos Neg P-value E-value # BEST CCACCAYG CRTGGTGG 54 14 5.1e-007 2.1e-002 # CCACCACG CGTGGTGG 18 1 3.8e-005 1.6e+000 # CCACCATG CATGGTGG 36 13 6.8e-004 2.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 2.1e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 MOTIF GCCATTDC DREME-40 # Word RC Word Pos Neg P-value E-value # BEST GCCATTDC GHAATGGC 90 36 7.2e-007 2.9e-002 # GCCATTGC GCAATGGC 39 16 1.3e-003 5.4e+001 # GCCATTAC GTAATGGC 18 5 5.3e-003 2.2e+002 # GCCATTTC GAAATGGC 33 15 6.5e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 2.9e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.433333 0.366667 0.000000 1.000000 0.000000 0.000000 MOTIF CYTTTCCC DREME-41 # Word RC Word Pos Neg P-value E-value # BEST CYTTTCCC GGGAAARG 101 44 1.1e-006 4.4e-002 # CTTTTCCC GGGAAAAG 65 26 2.5e-005 1.0e+000 # CCTTTCCC GGGAAAGG 36 18 9.8e-003 4.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 101 E= 4.4e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.356436 0.000000 0.643564 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 1412.87 seconds