cellbender:remove-background: Command: cellbender remove-background --input /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/inputs/1507-Schizophrenia-dACC.raw_feature_bc_matrix.h5 --output /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output.h5 --cuda --expected-cells 4338 --total-droplets-included 20000 --fpr 0.01 --epochs 150 cellbender:remove-background: CellBender 0.3.0 cellbender:remove-background: (Workflow hash 6e6f9d09a9) cellbender:remove-background: 2024-06-06 14:52:05 cellbender:remove-background: Running remove-background cellbender:remove-background: Loading data from /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/inputs/1507-Schizophrenia-dACC.raw_feature_bc_matrix.h5 cellbender:remove-background: CellRanger v3 format cellbender:remove-background: Features in dataset: 36601 Gene Expression cellbender:remove-background: Trimming features for inference. cellbender:remove-background: 29199 features have nonzero counts. cellbender:remove-background: Prior on counts for cells is 4592 cellbender:remove-background: Prior on counts for empty droplets is 37 cellbender:remove-background: Excluding 10849 features that are estimated to have <= 0.1 background counts in cells. cellbender:remove-background: Including 18350 features in the analysis. cellbender:remove-background: Trimming barcodes for inference. cellbender:remove-background: Excluding barcodes with counts below 18 cellbender:remove-background: Using 4338 probable cell barcodes, plus an additional 15662 barcodes, and 58263 empty droplets. cellbender:remove-background: Largest surely-empty droplet has 37 UMI counts. cellbender:remove-background: Attempting to unpack tarball "ckpt.tar.gz" to /tmp/tmpbexjed8r cellbender:remove-background: No saved checkpoint. cellbender:remove-background: No checkpoint loaded. cellbender:remove-background: Running inference... cellbender:remove-background: [epoch 001] average training loss: 3480.5308 cellbender:remove-background: [epoch 002] average training loss: 2833.4889 (5.5 seconds per epoch) cellbender:remove-background: Will checkpoint every 77 epochs cellbender:remove-background: [epoch 003] average training loss: 2131.3899 cellbender:remove-background: [epoch 004] average training loss: 1821.0072 cellbender:remove-background: [epoch 005] average training loss: 1731.7111 cellbender:remove-background: [epoch 005] average test loss: 1670.6751 cellbender:remove-background: [epoch 006] average training loss: 1692.8569 cellbender:remove-background: [epoch 007] average training loss: 1676.2855 cellbender:remove-background: [epoch 008] average training loss: 1667.2629 cellbender:remove-background: [epoch 009] average training loss: 1662.6846 cellbender:remove-background: [epoch 010] average training loss: 1651.3595 cellbender:remove-background: [epoch 010] average test loss: 1609.4847 cellbender:remove-background: [epoch 011] average training loss: 1649.0569 cellbender:remove-background: [epoch 012] average training loss: 1638.2206 cellbender:remove-background: [epoch 013] average training loss: 1594.4700 cellbender:remove-background: [epoch 014] average training loss: 1582.5316 cellbender:remove-background: [epoch 015] average training loss: 1573.1517 cellbender:remove-background: [epoch 015] average test loss: 1547.1576 cellbender:remove-background: [epoch 016] average training loss: 1571.0053 cellbender:remove-background: [epoch 017] average training loss: 1577.3086 cellbender:remove-background: [epoch 018] average training loss: 1573.0708 cellbender:remove-background: [epoch 019] average training loss: 1569.3963 cellbender:remove-background: [epoch 020] average training loss: 1562.3413 cellbender:remove-background: [epoch 020] average test loss: 1533.8109 cellbender:remove-background: [epoch 021] average training loss: 1563.0473 cellbender:remove-background: [epoch 022] average training loss: 1566.1247 cellbender:remove-background: [epoch 023] average training loss: 1569.0304 cellbender:remove-background: [epoch 024] average training loss: 1557.5587 cellbender:remove-background: [epoch 025] average training loss: 1562.9613 cellbender:remove-background: [epoch 025] average test loss: 1520.6420 cellbender:remove-background: [epoch 026] average training loss: 1551.2094 cellbender:remove-background: [epoch 027] average training loss: 1556.8885 cellbender:remove-background: [epoch 028] average training loss: 1555.3984 cellbender:remove-background: [epoch 029] average training loss: 1541.8242 cellbender:remove-background: [epoch 030] average training loss: 1561.9377 cellbender:remove-background: [epoch 030] average test loss: 1503.9352 cellbender:remove-background: [epoch 031] average training loss: 1557.3615 cellbender:remove-background: [epoch 032] average training loss: 1548.7267 cellbender:remove-background: [epoch 033] average training loss: 1561.5514 cellbender:remove-background: [epoch 034] average training loss: 1547.8192 cellbender:remove-background: [epoch 035] average training loss: 1540.5975 cellbender:remove-background: [epoch 035] average test loss: 1495.3111 cellbender:remove-background: [epoch 036] average training loss: 1588.5436 cellbender:remove-background: [epoch 037] average training loss: 1550.1204 cellbender:remove-background: [epoch 038] average training loss: 1547.1066 cellbender:remove-background: [epoch 039] average training loss: 1543.2876 cellbender:remove-background: [epoch 040] average training loss: 1553.7799 cellbender:remove-background: [epoch 040] average test loss: 1507.6498 cellbender:remove-background: [epoch 041] average training loss: 1567.5804 cellbender:remove-background: [epoch 042] average training loss: 1557.1457 cellbender:remove-background: [epoch 043] average training loss: 1540.7955 cellbender:remove-background: [epoch 044] average training loss: 1529.9138 cellbender:remove-background: [epoch 045] average training loss: 1544.3767 cellbender:remove-background: [epoch 045] average test loss: 1486.9593 cellbender:remove-background: [epoch 046] average training loss: 1530.1147 cellbender:remove-background: [epoch 047] average training loss: 1532.6532 cellbender:remove-background: [epoch 048] average training loss: 1553.7462 cellbender:remove-background: [epoch 049] average training loss: 1546.2394 cellbender:remove-background: [epoch 050] average training loss: 1547.8283 cellbender:remove-background: [epoch 050] average test loss: 1484.2087 cellbender:remove-background: [epoch 051] average training loss: 1530.4538 cellbender:remove-background: [epoch 052] average training loss: 1531.1456 cellbender:remove-background: [epoch 053] average training loss: 1539.4856 cellbender:remove-background: [epoch 054] average training loss: 1536.1867 cellbender:remove-background: [epoch 055] average training loss: 1524.3592 cellbender:remove-background: [epoch 055] average test loss: 1590.8119 cellbender:remove-background: [epoch 056] average training loss: 1546.8661 cellbender:remove-background: [epoch 057] average training loss: 1553.7532 cellbender:remove-background: [epoch 058] average training loss: 1532.4648 cellbender:remove-background: [epoch 059] average training loss: 1556.5188 cellbender:remove-background: [epoch 060] average training loss: 1547.7083 cellbender:remove-background: [epoch 060] average test loss: 1501.4251 cellbender:remove-background: [epoch 061] average training loss: 1545.7883 cellbender:remove-background: [epoch 062] average training loss: 1551.9330 cellbender:remove-background: [epoch 063] average training loss: 1533.0544 cellbender:remove-background: [epoch 064] average training loss: 1545.6018 cellbender:remove-background: [epoch 065] average training loss: 1540.1107 cellbender:remove-background: [epoch 065] average test loss: 1521.2656 cellbender:remove-background: [epoch 066] average training loss: 1531.9883 cellbender:remove-background: [epoch 067] average training loss: 1532.6214 cellbender:remove-background: [epoch 068] average training loss: 1530.0001 cellbender:remove-background: [epoch 069] average training loss: 1531.1371 cellbender:remove-background: [epoch 070] average training loss: 1538.6373 cellbender:remove-background: [epoch 070] average test loss: 1497.0403 cellbender:remove-background: [epoch 071] average training loss: 1526.4466 cellbender:remove-background: [epoch 072] average training loss: 1531.4637 cellbender:remove-background: [epoch 073] average training loss: 1529.4948 cellbender:remove-background: [epoch 074] average training loss: 1536.6633 cellbender:remove-background: [epoch 075] average training loss: 1529.3035 cellbender:remove-background: [epoch 075] average test loss: 1498.0776 cellbender:remove-background: [epoch 076] average training loss: 1523.7179 cellbender:remove-background: [epoch 077] average training loss: 1528.5574 cellbender:remove-background: Saving a checkpoint... cellbender:remove-background: Saved checkpoint as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/ckpt.tar.gz cellbender:remove-background: [epoch 078] average training loss: 1542.1594 cellbender:remove-background: [epoch 079] average training loss: 1536.0117 cellbender:remove-background: [epoch 080] average training loss: 1530.3470 cellbender:remove-background: [epoch 080] average test loss: 1512.3126 cellbender:remove-background: [epoch 081] average training loss: 1534.8435 cellbender:remove-background: [epoch 082] average training loss: 1537.9621 cellbender:remove-background: [epoch 083] average training loss: 1543.0786 cellbender:remove-background: [epoch 084] average training loss: 1536.3929 cellbender:remove-background: [epoch 085] average training loss: 1535.1670 cellbender:remove-background: [epoch 085] average test loss: 1522.9099 cellbender:remove-background: [epoch 086] average training loss: 1535.5590 cellbender:remove-background: [epoch 087] average training loss: 1533.9667 cellbender:remove-background: [epoch 088] average training loss: 1541.3258 cellbender:remove-background: [epoch 089] average training loss: 1536.0963 cellbender:remove-background: [epoch 090] average training loss: 1543.8207 cellbender:remove-background: [epoch 090] average test loss: 1522.7807 cellbender:remove-background: [epoch 091] average training loss: 1543.2229 cellbender:remove-background: [epoch 092] average training loss: 1546.9410 cellbender:remove-background: [epoch 093] average training loss: 1545.1266 cellbender:remove-background: [epoch 094] average training loss: 1546.9157 cellbender:remove-background: [epoch 095] average training loss: 1540.6551 cellbender:remove-background: [epoch 095] average test loss: 1520.5810 cellbender:remove-background: [epoch 096] average training loss: 1547.7132 cellbender:remove-background: [epoch 097] average training loss: 1540.6848 cellbender:remove-background: [epoch 098] average training loss: 1545.4255 cellbender:remove-background: [epoch 099] average training loss: 1541.3820 cellbender:remove-background: [epoch 100] average training loss: 1543.5357 cellbender:remove-background: [epoch 100] average test loss: 1529.5307 cellbender:remove-background: [epoch 101] average training loss: 1546.7574 cellbender:remove-background: [epoch 102] average training loss: 1546.4955 cellbender:remove-background: [epoch 103] average training loss: 1545.2818 cellbender:remove-background: [epoch 104] average training loss: 1539.8191 cellbender:remove-background: [epoch 105] average training loss: 1546.2203 cellbender:remove-background: [epoch 105] average test loss: 1525.3111 cellbender:remove-background: [epoch 106] average training loss: 1549.2431 cellbender:remove-background: [epoch 107] average training loss: 1546.8102 cellbender:remove-background: [epoch 108] average training loss: 1548.0333 cellbender:remove-background: [epoch 109] average training loss: 1545.8734 cellbender:remove-background: [epoch 110] average training loss: 1545.3570 cellbender:remove-background: [epoch 110] average test loss: 1524.1191 cellbender:remove-background: [epoch 111] average training loss: 1548.9291 cellbender:remove-background: [epoch 112] average training loss: 1545.2355 cellbender:remove-background: [epoch 113] average training loss: 1540.9525 cellbender:remove-background: [epoch 114] average training loss: 1545.3137 cellbender:remove-background: [epoch 115] average training loss: 1542.8014 cellbender:remove-background: [epoch 115] average test loss: 1537.0306 cellbender:remove-background: [epoch 116] average training loss: 1542.7976 cellbender:remove-background: [epoch 117] average training loss: 1547.2833 cellbender:remove-background: [epoch 118] average training loss: 1546.9880 cellbender:remove-background: [epoch 119] average training loss: 1540.2145 cellbender:remove-background: [epoch 120] average training loss: 1551.2092 cellbender:remove-background: [epoch 120] average test loss: 1550.1629 cellbender:remove-background: [epoch 121] average training loss: 1542.7697 cellbender:remove-background: [epoch 122] average training loss: 1541.8845 cellbender:remove-background: [epoch 123] average training loss: 1543.4638 cellbender:remove-background: [epoch 124] average training loss: 1543.8603 cellbender:remove-background: [epoch 125] average training loss: 1542.1694 cellbender:remove-background: [epoch 125] average test loss: 1530.0980 cellbender:remove-background: [epoch 126] average training loss: 1546.0802 cellbender:remove-background: [epoch 127] average training loss: 1547.6483 cellbender:remove-background: [epoch 128] average training loss: 1544.3351 cellbender:remove-background: [epoch 129] average training loss: 1544.0723 cellbender:remove-background: [epoch 130] average training loss: 1545.8256 cellbender:remove-background: [epoch 130] average test loss: 1551.1093 cellbender:remove-background: [epoch 131] average training loss: 1544.3470 cellbender:remove-background: [epoch 132] average training loss: 1543.1842 cellbender:remove-background: [epoch 133] average training loss: 1544.8845 cellbender:remove-background: [epoch 134] average training loss: 1543.1439 cellbender:remove-background: [epoch 135] average training loss: 1543.6531 cellbender:remove-background: [epoch 135] average test loss: 1536.7730 cellbender:remove-background: [epoch 136] average training loss: 1546.3071 cellbender:remove-background: [epoch 137] average training loss: 1545.3411 cellbender:remove-background: [epoch 138] average training loss: 1542.9528 cellbender:remove-background: [epoch 139] average training loss: 1540.9369 cellbender:remove-background: [epoch 140] average training loss: 1547.8764 cellbender:remove-background: [epoch 140] average test loss: 1547.0124 cellbender:remove-background: [epoch 141] average training loss: 1549.5271 cellbender:remove-background: [epoch 142] average training loss: 1549.1804 cellbender:remove-background: [epoch 143] average training loss: 1542.7623 cellbender:remove-background: [epoch 144] average training loss: 1543.7487 cellbender:remove-background: [epoch 145] average training loss: 1548.3382 cellbender:remove-background: [epoch 145] average test loss: 1542.4759 cellbender:remove-background: [epoch 146] average training loss: 1543.9899 cellbender:remove-background: [epoch 147] average training loss: 1546.9152 cellbender:remove-background: [epoch 148] average training loss: 1545.3766 cellbender:remove-background: [epoch 149] average training loss: 1542.1875 cellbender:remove-background: [epoch 150] average training loss: 1542.9456 cellbender:remove-background: [epoch 150] average test loss: 1540.7977 cellbender:remove-background: Saving a checkpoint... cellbender:remove-background: Saved checkpoint as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/ckpt.tar.gz cellbender:remove-background: 2024-06-06 15:08:24 cellbender:remove-background: Inference procedure complete. cellbender:remove-background: Attempting to unpack tarball "ckpt.tar.gz" to /tmp/tmpknj26dbs cellbender:remove-background: Successfully unpacked tarball to /tmp/tmpknj26dbs /tmp/tmpknj26dbs/6e6f9d09a9_random.pyro /tmp/tmpknj26dbs/6e6f9d09a9_random.cuda /tmp/tmpknj26dbs/6e6f9d09a9_model.torch /tmp/tmpknj26dbs/6e6f9d09a9_optim.torch /tmp/tmpknj26dbs/6e6f9d09a9_optim.pyro /tmp/tmpknj26dbs/6e6f9d09a9_params.pyro /tmp/tmpknj26dbs/6e6f9d09a9_train.loaderstate /tmp/tmpknj26dbs/6e6f9d09a9_test.loaderstate /tmp/tmpknj26dbs/6e6f9d09a9_args.npy cellbender:remove-background: Posterior not currently included in checkpoint. cellbender:remove-background: Computing posterior noise count probabilities in mini-batches. cellbender:remove-background: Working on chunk (1/42) cellbender:remove-background: [0.03 mins per chunk] cellbender:remove-background: Working on chunk (2/42) cellbender:remove-background: Working on chunk (3/42) cellbender:remove-background: Working on chunk (4/42) cellbender:remove-background: Working on chunk (5/42) cellbender:remove-background: Working on chunk (6/42) cellbender:remove-background: Working on chunk (7/42) cellbender:remove-background: Working on chunk (8/42) cellbender:remove-background: Working on chunk (9/42) cellbender:remove-background: Working on chunk (10/42) cellbender:remove-background: Working on chunk (11/42) cellbender:remove-background: Working on chunk (12/42) cellbender:remove-background: Working on chunk (13/42) cellbender:remove-background: Working on chunk (14/42) cellbender:remove-background: Working on chunk (15/42) cellbender:remove-background: Working on chunk (16/42) cellbender:remove-background: Working on chunk (17/42) cellbender:remove-background: Working on chunk (18/42) cellbender:remove-background: Working on chunk (19/42) cellbender:remove-background: Working on chunk (20/42) cellbender:remove-background: Working on chunk (21/42) cellbender:remove-background: Working on chunk (22/42) cellbender:remove-background: Working on chunk (23/42) cellbender:remove-background: Working on chunk (24/42) cellbender:remove-background: Working on chunk (25/42) cellbender:remove-background: Working on chunk (26/42) cellbender:remove-background: Working on chunk (27/42) cellbender:remove-background: Working on chunk (28/42) cellbender:remove-background: Working on chunk (29/42) cellbender:remove-background: Working on chunk (30/42) cellbender:remove-background: Working on chunk (31/42) cellbender:remove-background: Working on chunk (32/42) cellbender:remove-background: Working on chunk (33/42) cellbender:remove-background: Working on chunk (34/42) cellbender:remove-background: Working on chunk (35/42) cellbender:remove-background: Working on chunk (36/42) cellbender:remove-background: Working on chunk (37/42) cellbender:remove-background: Working on chunk (38/42) cellbender:remove-background: Working on chunk (39/42) cellbender:remove-background: Working on chunk (40/42) cellbender:remove-background: Working on chunk (41/42) cellbender:remove-background: Working on chunk (42/42) cellbender:remove-background: Writing full posterior to /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output_posterior.h5 cellbender:remove-background: Succeeded in writing posterior to file /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output_posterior.h5 cellbender:remove-background: Added posterior object to checkpoint file. cellbender:remove-background: 2024-06-06 15:11:04 cellbender:remove-background: Saved summary plots as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output.pdf cellbender:remove-background: Saved cell barcodes in /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output_cell_barcodes.csv cellbender:remove-background: Computing target noise counts per gene for MCKP estimator cellbender:remove-background: Using MCKP noise targets computed for FPR 0.01 cellbender:remove-background: Computing denoised counts using mckp estimator cellbender:remove-background: Working on chunk (1/7) cellbender:remove-background: [0.96 mins per chunk] cellbender:remove-background: Working on chunk (2/7) cellbender:remove-background: Working on chunk (3/7) cellbender:remove-background: Working on chunk (4/7) cellbender:remove-background: Working on chunk (5/7) cellbender:remove-background: Working on chunk (6/7) cellbender:remove-background: Working on chunk (7/7) cellbender:remove-background: 2024-06-06 15:18:03 Total MCKP estimation time = 402.89 sec cellbender:remove-background: Succeeded in writing CellRanger format output to file /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output.h5 cellbender:remove-background: Succeeded in writing CellRanger format output to file /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output_filtered.h5 cellbender:remove-background: Saved output metrics as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output_metrics.csv Traceback (most recent call last): File "/home/users/guozy/miniconda3/envs/cellbender/bin/jupyter-nbconvert", line 5, in from nbconvert.nbconvertapp import main File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/__init__.py", line 5, in from .exporters import * File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/__init__.py", line 1, in from .asciidoc import ASCIIDocExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/asciidoc.py", line 9, in from .templateexporter import TemplateExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/templateexporter.py", line 25, in from lxml.html.clean import clean_html File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/lxml/html/clean.py", line 21, in ) from None ImportError: lxml.html.clean module is now a separate project lxml_html_clean. Install lxml[html_clean] or lxml_html_clean directly. Traceback (most recent call last): File "/home/users/guozy/miniconda3/envs/cellbender/bin/jupyter-nbconvert", line 5, in from nbconvert.nbconvertapp import main File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/__init__.py", line 5, in from .exporters import * File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/__init__.py", line 1, in from .asciidoc import ASCIIDocExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/asciidoc.py", line 9, in from .templateexporter import TemplateExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/templateexporter.py", line 25, in from lxml.html.clean import clean_html File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/lxml/html/clean.py", line 21, in ) from None ImportError: lxml.html.clean module is now a separate project lxml_html_clean. Install lxml[html_clean] or lxml_html_clean directly. mv: cannot stat ‘tmp.report.nbconvert.html’: No such file or directory rm: cannot remove ‘tmp.report.nbconvert.ipynb’: No such file or directory cellbender:remove-background: Unable to create report. cellbender:remove-background: Traceback (most recent call last): File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/cellbender/remove_background/run.py", line 351, in compute_output_denoised_counts_reports_metrics output=html_report_file, File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/cellbender/remove_background/report.py", line 82, in run_notebook_make_html title=('CellBender: ' + os.path.basename(output).replace('_report.html', '')), File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/cellbender/remove_background/report.py", line 59, in _postprocess_html with open(file, mode='r') as f: FileNotFoundError: [Errno 2] No such file or directory: '/oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-dACC/1507-Schizophrenia-dACC.cellbender.output_report.html' cellbender:remove-background: Completed remove-background. cellbender:remove-background: 2024-06-06 15:18:16