cellbender:remove-background: Command: cellbender remove-background --input /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/inputs/1507-Schizophrenia-DLPFC.raw_feature_bc_matrix.h5 --output /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output.h5 --cuda --expected-cells 3607 --total-droplets-included 20000 --fpr 0.01 --epochs 150 cellbender:remove-background: CellBender 0.3.0 cellbender:remove-background: (Workflow hash 82f98aacdd) cellbender:remove-background: 2024-06-06 14:51:41 cellbender:remove-background: Running remove-background cellbender:remove-background: Loading data from /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/inputs/1507-Schizophrenia-DLPFC.raw_feature_bc_matrix.h5 cellbender:remove-background: CellRanger v3 format cellbender:remove-background: Features in dataset: 36601 Gene Expression cellbender:remove-background: Trimming features for inference. cellbender:remove-background: 31801 features have nonzero counts. cellbender:remove-background: Prior on counts for cells is 9246 cellbender:remove-background: Prior on counts for empty droplets is 38 cellbender:remove-background: Excluding 11740 features that are estimated to have <= 0.1 background counts in cells. cellbender:remove-background: Including 20061 features in the analysis. cellbender:remove-background: Trimming barcodes for inference. cellbender:remove-background: Excluding barcodes with counts below 19 cellbender:remove-background: Using 3607 probable cell barcodes, plus an additional 16393 barcodes, and 52769 empty droplets. cellbender:remove-background: Largest surely-empty droplet has 37 UMI counts. cellbender:remove-background: Attempting to unpack tarball "ckpt.tar.gz" to /tmp/tmp9dzh5hq4 cellbender:remove-background: No saved checkpoint. cellbender:remove-background: No checkpoint loaded. cellbender:remove-background: Running inference... cellbender:remove-background: [epoch 001] average training loss: 4965.4756 cellbender:remove-background: [epoch 002] average training loss: 3825.8497 (5.9 seconds per epoch) cellbender:remove-background: Will checkpoint every 72 epochs cellbender:remove-background: [epoch 003] average training loss: 3191.6752 cellbender:remove-background: [epoch 004] average training loss: 2785.7054 cellbender:remove-background: [epoch 005] average training loss: 2611.9470 cellbender:remove-background: [epoch 005] average test loss: 2641.2420 cellbender:remove-background: [epoch 006] average training loss: 2502.7266 cellbender:remove-background: [epoch 007] average training loss: 2422.9385 cellbender:remove-background: [epoch 008] average training loss: 2394.3023 cellbender:remove-background: [epoch 009] average training loss: 2383.7785 cellbender:remove-background: [epoch 010] average training loss: 2325.0690 cellbender:remove-background: [epoch 010] average test loss: 2322.8748 cellbender:remove-background: [epoch 011] average training loss: 2262.6435 cellbender:remove-background: [epoch 012] average training loss: 2228.8165 cellbender:remove-background: [epoch 013] average training loss: 2205.7054 cellbender:remove-background: [epoch 014] average training loss: 2212.7306 cellbender:remove-background: [epoch 015] average training loss: 2187.0067 cellbender:remove-background: [epoch 015] average test loss: 2172.0407 cellbender:remove-background: [epoch 016] average training loss: 2166.1121 cellbender:remove-background: [epoch 017] average training loss: 2153.3928 cellbender:remove-background: [epoch 018] average training loss: 2132.4083 cellbender:remove-background: [epoch 019] average training loss: 2107.7721 cellbender:remove-background: [epoch 020] average training loss: 2086.8279 cellbender:remove-background: [epoch 020] average test loss: 2082.0820 cellbender:remove-background: [epoch 021] average training loss: 2079.5541 cellbender:remove-background: [epoch 022] average training loss: 2072.3145 cellbender:remove-background: [epoch 023] average training loss: 2065.8542 cellbender:remove-background: [epoch 024] average training loss: 2056.3923 cellbender:remove-background: [epoch 025] average training loss: 2055.7265 cellbender:remove-background: [epoch 025] average test loss: 2036.9906 cellbender:remove-background: [epoch 026] average training loss: 2044.8452 cellbender:remove-background: [epoch 027] average training loss: 2043.0940 cellbender:remove-background: [epoch 028] average training loss: 2065.2172 cellbender:remove-background: [epoch 029] average training loss: 2068.4331 cellbender:remove-background: [epoch 030] average training loss: 2084.0283 cellbender:remove-background: [epoch 030] average test loss: 2094.3005 cellbender:remove-background: [epoch 031] average training loss: 2152.2412 cellbender:remove-background: [epoch 032] average training loss: 2074.0904 cellbender:remove-background: [epoch 033] average training loss: 2142.6866 cellbender:remove-background: [epoch 034] average training loss: 2089.0324 cellbender:remove-background: [epoch 035] average training loss: 2088.8774 cellbender:remove-background: [epoch 035] average test loss: 2138.7308 cellbender:remove-background: [epoch 036] average training loss: 2198.1197 cellbender:remove-background: [epoch 037] average training loss: 2096.1947 cellbender:remove-background: [epoch 038] average training loss: 2149.2862 cellbender:remove-background: [epoch 039] average training loss: 2186.7958 cellbender:remove-background: [epoch 040] average training loss: 2179.7196 cellbender:remove-background: [epoch 040] average test loss: 2231.7538 cellbender:remove-background: [epoch 041] average training loss: 2180.5890 cellbender:remove-background: [epoch 042] average training loss: 2140.5959 cellbender:remove-background: [epoch 043] average training loss: 2134.4129 cellbender:remove-background: [epoch 044] average training loss: 2260.7193 cellbender:remove-background: [epoch 045] average training loss: 2199.8285 cellbender:remove-background: [epoch 045] average test loss: 2137.5859 cellbender:remove-background: [epoch 046] average training loss: 2168.7887 cellbender:remove-background: [epoch 047] average training loss: 2196.0805 cellbender:remove-background: [epoch 048] average training loss: 2177.3699 cellbender:remove-background: [epoch 049] average training loss: 2179.3707 cellbender:remove-background: [epoch 050] average training loss: 2137.7475 cellbender:remove-background: [epoch 050] average test loss: 2060.5420 cellbender:remove-background: [epoch 051] average training loss: 2173.1666 cellbender:remove-background: [epoch 052] average training loss: 2180.8442 cellbender:remove-background: [epoch 053] average training loss: 2206.3893 cellbender:remove-background: [epoch 054] average training loss: 2212.1103 cellbender:remove-background: [epoch 055] average training loss: 2182.5081 cellbender:remove-background: [epoch 055] average test loss: 2017.7096 cellbender:remove-background: [epoch 056] average training loss: 2258.8931 cellbender:remove-background: [epoch 057] average training loss: 2216.7764 cellbender:remove-background: [epoch 058] average training loss: 2202.9570 cellbender:remove-background: [epoch 059] average training loss: 2099.2969 cellbender:remove-background: [epoch 060] average training loss: 2135.6818 cellbender:remove-background: [epoch 060] average test loss: 2302.1831 cellbender:remove-background: [epoch 061] average training loss: 2146.2580 cellbender:remove-background: [epoch 062] average training loss: 2124.5649 cellbender:remove-background: [epoch 063] average training loss: 2163.7485 cellbender:remove-background: [epoch 064] average training loss: 2181.6941 cellbender:remove-background: [epoch 065] average training loss: 2157.6045 cellbender:remove-background: [epoch 065] average test loss: 2067.7150 cellbender:remove-background: [epoch 066] average training loss: 2119.4104 cellbender:remove-background: [epoch 067] average training loss: 2130.1681 cellbender:remove-background: [epoch 068] average training loss: 2163.5065 cellbender:remove-background: [epoch 069] average training loss: 2114.1978 cellbender:remove-background: [epoch 070] average training loss: 2129.5724 cellbender:remove-background: [epoch 070] average test loss: 2243.3298 cellbender:remove-background: [epoch 071] average training loss: 2136.8916 cellbender:remove-background: [epoch 072] average training loss: 2115.7090 cellbender:remove-background: Saving a checkpoint... cellbender:remove-background: Saved checkpoint as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/ckpt.tar.gz cellbender:remove-background: [epoch 073] average training loss: 2207.4421 cellbender:remove-background: [epoch 074] average training loss: 2130.0577 cellbender:remove-background: [epoch 075] average training loss: 2138.3875 cellbender:remove-background: [epoch 075] average test loss: 2037.7236 cellbender:remove-background: [epoch 076] average training loss: 2115.8087 cellbender:remove-background: [epoch 077] average training loss: 2110.1017 cellbender:remove-background: [epoch 078] average training loss: 2119.8081 cellbender:remove-background: [epoch 079] average training loss: 2127.0015 cellbender:remove-background: [epoch 080] average training loss: 2141.5542 cellbender:remove-background: [epoch 080] average test loss: 2057.7267 cellbender:remove-background: [epoch 081] average training loss: 2127.4642 cellbender:remove-background: [epoch 082] average training loss: 2100.8553 cellbender:remove-background: [epoch 083] average training loss: 2051.3672 cellbender:remove-background: [epoch 084] average training loss: 2103.5880 cellbender:remove-background: [epoch 085] average training loss: 2062.9834 cellbender:remove-background: [epoch 085] average test loss: 2141.7352 cellbender:remove-background: [epoch 086] average training loss: 2089.3666 cellbender:remove-background: [epoch 087] average training loss: 2084.5461 cellbender:remove-background: [epoch 088] average training loss: 2108.2229 cellbender:remove-background: [epoch 089] average training loss: 2084.0026 cellbender:remove-background: [epoch 090] average training loss: 2105.4607 cellbender:remove-background: [epoch 090] average test loss: 2031.0186 cellbender:remove-background: [epoch 091] average training loss: 2102.7908 cellbender:remove-background: [epoch 092] average training loss: 2101.3783 cellbender:remove-background: [epoch 093] average training loss: 2068.4526 cellbender:remove-background: [epoch 094] average training loss: 2069.6734 cellbender:remove-background: [epoch 095] average training loss: 2074.9545 cellbender:remove-background: [epoch 095] average test loss: 2038.4023 cellbender:remove-background: [epoch 096] average training loss: 2073.7591 cellbender:remove-background: [epoch 097] average training loss: 2059.8539 cellbender:remove-background: [epoch 098] average training loss: 2089.7737 cellbender:remove-background: [epoch 099] average training loss: 2082.2034 cellbender:remove-background: [epoch 100] average training loss: 2062.1475 cellbender:remove-background: [epoch 100] average test loss: 2054.4308 cellbender:remove-background: [epoch 101] average training loss: 2040.1448 cellbender:remove-background: [epoch 102] average training loss: 2169.8378 cellbender:remove-background: [epoch 103] average training loss: 2060.2908 cellbender:remove-background: [epoch 104] average training loss: 2094.8083 cellbender:remove-background: [epoch 105] average training loss: 2096.5679 cellbender:remove-background: [epoch 105] average test loss: 2032.1019 cellbender:remove-background: [epoch 106] average training loss: 2099.2069 cellbender:remove-background: [epoch 107] average training loss: 2087.8818 cellbender:remove-background: [epoch 108] average training loss: 2081.4587 cellbender:remove-background: [epoch 109] average training loss: 2089.7949 cellbender:remove-background: [epoch 110] average training loss: 2061.4454 cellbender:remove-background: [epoch 110] average test loss: 2043.5625 cellbender:remove-background: [epoch 111] average training loss: 2093.4206 cellbender:remove-background: [epoch 112] average training loss: 2089.1086 cellbender:remove-background: [epoch 113] average training loss: 2101.6840 cellbender:remove-background: [epoch 114] average training loss: 2068.3205 cellbender:remove-background: [epoch 115] average training loss: 2049.7658 cellbender:remove-background: [epoch 115] average test loss: 2059.0186 cellbender:remove-background: [epoch 116] average training loss: 2066.1915 cellbender:remove-background: [epoch 117] average training loss: 2046.6677 cellbender:remove-background: [epoch 118] average training loss: 2061.3079 cellbender:remove-background: [epoch 119] average training loss: 2063.5505 cellbender:remove-background: [epoch 120] average training loss: 2054.9115 cellbender:remove-background: [epoch 120] average test loss: 2083.7273 cellbender:remove-background: [epoch 121] average training loss: 2061.7128 cellbender:remove-background: [epoch 122] average training loss: 2051.8488 cellbender:remove-background: [epoch 123] average training loss: 2101.5512 cellbender:remove-background: [epoch 124] average training loss: 2049.9215 cellbender:remove-background: [epoch 125] average training loss: 2059.6788 cellbender:remove-background: [epoch 125] average test loss: 2193.2703 cellbender:remove-background: [epoch 126] average training loss: 2057.8793 cellbender:remove-background: [epoch 127] average training loss: 2068.3654 cellbender:remove-background: [epoch 128] average training loss: 2048.0619 cellbender:remove-background: [epoch 129] average training loss: 2069.0991 cellbender:remove-background: [epoch 130] average training loss: 2064.8636 cellbender:remove-background: [epoch 130] average test loss: 2047.2130 cellbender:remove-background: [epoch 131] average training loss: 2045.6681 cellbender:remove-background: [epoch 132] average training loss: 2061.5260 cellbender:remove-background: [epoch 133] average training loss: 2068.3544 cellbender:remove-background: [epoch 134] average training loss: 2060.6238 cellbender:remove-background: [epoch 135] average training loss: 2051.5107 cellbender:remove-background: [epoch 135] average test loss: 2032.6327 cellbender:remove-background: [epoch 136] average training loss: 2042.3273 cellbender:remove-background: [epoch 137] average training loss: 2035.4601 cellbender:remove-background: [epoch 138] average training loss: 2040.3606 cellbender:remove-background: [epoch 139] average training loss: 2060.4223 cellbender:remove-background: [epoch 140] average training loss: 2039.1603 cellbender:remove-background: [epoch 140] average test loss: 2051.1623 cellbender:remove-background: [epoch 141] average training loss: 2062.0965 cellbender:remove-background: [epoch 142] average training loss: 2038.2738 cellbender:remove-background: [epoch 143] average training loss: 2066.6541 cellbender:remove-background: [epoch 144] average training loss: 2059.3397 cellbender:remove-background: Saving a checkpoint... cellbender:remove-background: Saved checkpoint as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/ckpt.tar.gz cellbender:remove-background: [epoch 145] average training loss: 2047.4900 cellbender:remove-background: [epoch 145] average test loss: 2072.2619 cellbender:remove-background: [epoch 146] average training loss: 2038.3238 cellbender:remove-background: [epoch 147] average training loss: 2040.9057 cellbender:remove-background: [epoch 148] average training loss: 2084.8976 cellbender:remove-background: [epoch 149] average training loss: 2030.7900 cellbender:remove-background: [epoch 150] average training loss: 2056.0622 cellbender:remove-background: [epoch 150] average test loss: 2090.9719 cellbender:remove-background: Saving a checkpoint... cellbender:remove-background: Saved checkpoint as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/ckpt.tar.gz cellbender:remove-background: 2024-06-06 15:10:55 cellbender:remove-background: Inference procedure complete. cellbender:remove-background: Attempting to unpack tarball "ckpt.tar.gz" to /tmp/tmpzbmxdiru cellbender:remove-background: Successfully unpacked tarball to /tmp/tmpzbmxdiru /tmp/tmpzbmxdiru/82f98aacdd_random.pyro /tmp/tmpzbmxdiru/82f98aacdd_random.cuda /tmp/tmpzbmxdiru/82f98aacdd_model.torch /tmp/tmpzbmxdiru/82f98aacdd_optim.torch /tmp/tmpzbmxdiru/82f98aacdd_optim.pyro /tmp/tmpzbmxdiru/82f98aacdd_params.pyro /tmp/tmpzbmxdiru/82f98aacdd_train.loaderstate /tmp/tmpzbmxdiru/82f98aacdd_test.loaderstate /tmp/tmpzbmxdiru/82f98aacdd_args.npy cellbender:remove-background: Posterior not currently included in checkpoint. cellbender:remove-background: Computing posterior noise count probabilities in mini-batches. cellbender:remove-background: Working on chunk (1/37) cellbender:remove-background: [0.03 mins per chunk] cellbender:remove-background: Working on chunk (2/37) cellbender:remove-background: Working on chunk (3/37) cellbender:remove-background: Working on chunk (4/37) cellbender:remove-background: Working on chunk (5/37) cellbender:remove-background: Working on chunk (6/37) cellbender:remove-background: Working on chunk (7/37) cellbender:remove-background: Working on chunk (8/37) cellbender:remove-background: Working on chunk (9/37) cellbender:remove-background: Working on chunk (10/37) cellbender:remove-background: Working on chunk (11/37) cellbender:remove-background: Working on chunk (12/37) cellbender:remove-background: Working on chunk (13/37) cellbender:remove-background: Working on chunk (14/37) cellbender:remove-background: Working on chunk (15/37) cellbender:remove-background: Working on chunk (16/37) cellbender:remove-background: Working on chunk (17/37) cellbender:remove-background: Working on chunk (18/37) cellbender:remove-background: Working on chunk (19/37) cellbender:remove-background: Working on chunk (20/37) cellbender:remove-background: Working on chunk (21/37) cellbender:remove-background: Working on chunk (22/37) cellbender:remove-background: Working on chunk (23/37) cellbender:remove-background: Working on chunk (24/37) cellbender:remove-background: Working on chunk (25/37) cellbender:remove-background: Working on chunk (26/37) cellbender:remove-background: Working on chunk (27/37) cellbender:remove-background: Working on chunk (28/37) cellbender:remove-background: Working on chunk (29/37) cellbender:remove-background: Working on chunk (30/37) cellbender:remove-background: Working on chunk (31/37) cellbender:remove-background: Working on chunk (32/37) cellbender:remove-background: Working on chunk (33/37) cellbender:remove-background: Working on chunk (34/37) cellbender:remove-background: Working on chunk (35/37) cellbender:remove-background: Working on chunk (36/37) cellbender:remove-background: Working on chunk (37/37) cellbender:remove-background: Writing full posterior to /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output_posterior.h5 cellbender:remove-background: Succeeded in writing posterior to file /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output_posterior.h5 cellbender:remove-background: Added posterior object to checkpoint file. cellbender:remove-background: 2024-06-06 15:14:04 cellbender:remove-background: Saved summary plots as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output.pdf cellbender:remove-background: Saved cell barcodes in /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output_cell_barcodes.csv cellbender:remove-background: Computing target noise counts per gene for MCKP estimator cellbender:remove-background: Using MCKP noise targets computed for FPR 0.01 cellbender:remove-background: Computing denoised counts using mckp estimator cellbender:remove-background: Working on chunk (1/7) cellbender:remove-background: [1.34 mins per chunk] cellbender:remove-background: Working on chunk (2/7) cellbender:remove-background: Working on chunk (3/7) cellbender:remove-background: Working on chunk (4/7) cellbender:remove-background: Working on chunk (5/7) cellbender:remove-background: Working on chunk (6/7) cellbender:remove-background: Working on chunk (7/7) cellbender:remove-background: 2024-06-06 15:23:45 Total MCKP estimation time = 558.05 sec cellbender:remove-background: Succeeded in writing CellRanger format output to file /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output.h5 cellbender:remove-background: Succeeded in writing CellRanger format output to file /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output_filtered.h5 cellbender:remove-background: Saved output metrics as /oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output_metrics.csv Traceback (most recent call last): File "/home/users/guozy/miniconda3/envs/cellbender/bin/jupyter-nbconvert", line 5, in from nbconvert.nbconvertapp import main File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/__init__.py", line 5, in from .exporters import * File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/__init__.py", line 1, in from .asciidoc import ASCIIDocExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/asciidoc.py", line 9, in from .templateexporter import TemplateExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/templateexporter.py", line 25, in from lxml.html.clean import clean_html File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/lxml/html/clean.py", line 21, in ) from None ImportError: lxml.html.clean module is now a separate project lxml_html_clean. Install lxml[html_clean] or lxml_html_clean directly. Traceback (most recent call last): File "/home/users/guozy/miniconda3/envs/cellbender/bin/jupyter-nbconvert", line 5, in from nbconvert.nbconvertapp import main File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/__init__.py", line 5, in from .exporters import * File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/__init__.py", line 1, in from .asciidoc import ASCIIDocExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/asciidoc.py", line 9, in from .templateexporter import TemplateExporter File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/nbconvert/exporters/templateexporter.py", line 25, in from lxml.html.clean import clean_html File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/lxml/html/clean.py", line 21, in ) from None ImportError: lxml.html.clean module is now a separate project lxml_html_clean. Install lxml[html_clean] or lxml_html_clean directly. mv: cannot stat ‘tmp.report.nbconvert.html’: No such file or directory rm: cannot remove ‘tmp.report.nbconvert.ipynb’: No such file or directory cellbender:remove-background: Unable to create report. cellbender:remove-background: Traceback (most recent call last): File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/cellbender/remove_background/run.py", line 351, in compute_output_denoised_counts_reports_metrics output=html_report_file, File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/cellbender/remove_background/report.py", line 82, in run_notebook_make_html title=('CellBender: ' + os.path.basename(output).replace('_report.html', '')), File "/home/users/guozy/miniconda3/envs/cellbender/lib/python3.7/site-packages/cellbender/remove_background/report.py", line 59, in _postprocess_html with open(file, mode='r') as f: FileNotFoundError: [Errno 2] No such file or directory: '/oak/stanford/groups/akundaje/projects/psychencode/outs/20231009_multiome_analysis/01-cellbender/outputs/1507-Schizophrenia-DLPFC/1507-Schizophrenia-DLPFC.cellbender.output_report.html' cellbender:remove-background: Completed remove-background. cellbender:remove-background: 2024-06-06 15:24:01