## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectGcBiasMetrics REFERENCE_SEQUENCE=/mnt/lab_data/kundaje/users/dskim89/ataqc/annotations/hg19/encodeHg19Male.fa INPUT=/srv/scratch/dskim89/ataqc/results/epinomics.atac.2016-06-22.test_run/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA/align/rep1/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA_1_pf.trim.PE2SE.nodup.bam OUTPUT=/srv/scratch/dskim89/ataqc/results/epinomics.atac.2016-06-22.test_run/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA/qc/rep1/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA_1_pf.PE2SE_gc.txt CHART_OUTPUT=/srv/scratch/dskim89/ataqc/results/epinomics.atac.2016-06-22.test_run/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA/qc/rep1/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA_1_pf.PE2SE_gcPlot.pdf SUMMARY_OUTPUT=/srv/scratch/dskim89/ataqc/results/epinomics.atac.2016-06-22.test_run/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA/qc/rep1/151202_BRISCOE_0269_AC83PEACXX_L3_AGGCAGAA_1_pf.PE2SE_gcSummary.txt ASSUME_SORTED=false VERBOSITY=ERROR QUIET=true    WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=1.0E-5 IS_BISULFITE_SEQUENCED=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Wed Jun 22 18:25:38 PDT 2016

## METRICS CLASS	picard.analysis.GcBiasSummaryMetrics
WINDOW_SIZE	TOTAL_CLUSTERS	ALIGNED_READS	AT_DROPOUT	GC_DROPOUT
100	13167501	26335002	27.284752	0.000016