i pattern cluster n
seqlets		 logo_imp logo_seq Klf4/f Nanog/f Oct4/f Pstat3/f Sall4/f Smad3/f Sox2/f Zfp281/f Klf4/d_p Nanog/d_p Oct4/d_p Pstat3/d_p Sall4/d_p Smad3/d_p Sox2/d_p Zfp281/d_p Klf4
footprint
counts		 Klf4
footprint
entropydiff		 Klf4
footprint
max		 Klf4
footprint
strandcor		 Klf4
imp
counts		 Klf4
imp
profile		 Klf4
periodicity
10bp		 Klf4
pos
meandiff		 Klf4
pos
std		 Klf4
pos
unimodal		 Klf4
region
counts		 Klf4/d Nanog
footprint
counts		 Nanog
footprint
entropydiff		 Nanog
footprint
max		 Nanog
footprint
strandcor		 Nanog
imp
counts		 Nanog
imp
profile		 Nanog
periodicity
10bp		 Nanog
pos
meandiff		 Nanog
pos
std		 Nanog
pos
unimodal		 Nanog
region
counts		 Nanog/d Oct4
footprint
counts		 Oct4
footprint
entropydiff		 Oct4
footprint
max		 Oct4
footprint
strandcor		 Oct4
imp
counts		 Oct4
imp
profile		 Oct4
periodicity
10bp		 Oct4
pos
meandiff		 Oct4
pos
std		 Oct4
pos
unimodal		 Oct4
region
counts		 Oct4/d Pstat3
footprint
counts		 Pstat3
footprint
entropydiff		 Pstat3
footprint
max		 Pstat3
footprint
strandcor		 Pstat3
imp
counts		 Pstat3
imp
profile		 Pstat3
periodicity
10bp		 Pstat3
pos
meandiff		 Pstat3
pos
std		 Pstat3
pos
unimodal		 Pstat3
region
counts		 Pstat3/d Sall4
footprint
counts		 Sall4
footprint
entropydiff		 Sall4
footprint
max		 Sall4
footprint
strandcor		 Sall4
imp
counts		 Sall4
imp
profile		 Sall4
periodicity
10bp		 Sall4
pos
meandiff		 Sall4
pos
std		 Sall4
pos
unimodal		 Sall4
region
counts		 Sall4/d Smad3
footprint
counts		 Smad3
footprint
entropydiff		 Smad3
footprint
max		 Smad3
footprint
strandcor		 Smad3
imp
counts		 Smad3
imp
profile		 Smad3
periodicity
10bp		 Smad3
pos
meandiff		 Smad3
pos
std		 Smad3
pos
unimodal		 Smad3
region
counts		 Smad3/d Sox2
footprint
counts		 Sox2
footprint
entropydiff		 Sox2
footprint
max		 Sox2
footprint
strandcor		 Sox2
imp
counts		 Sox2
imp
profile		 Sox2
periodicity
10bp		 Sox2
pos
meandiff		 Sox2
pos
std		 Sox2
pos
unimodal		 Sox2
region
counts		 Sox2/d Zfp281
footprint
counts		 Zfp281
footprint
entropydiff		 Zfp281
footprint
max		 Zfp281
footprint
strandcor		 Zfp281
imp
counts		 Zfp281
imp
profile		 Zfp281
periodicity
10bp		 Zfp281
pos
meandiff		 Zfp281
pos
std		 Zfp281
pos
unimodal		 Zfp281
region
counts		 Zfp281/d consensus ic
pwm
mean		 idx
0 m0_p3 1 267 86.7 20 66.7 86.7 80 86.7 13.3 93.3 172 0.482 1.76 0.00609 0.0253 0.197 0.0352 2.07 63.3 True 341 0.369 251 0.559 2.57 0.00646 0.0388 0.141 0.0257 2.27 89.3 True 521 0.244 194 0.467 1.87 0.00615 0.0135 0.116 0.0333 2.18 88.1 True 498 0.218 77.2 0.38 1.72 0.00525 -0.0147 0.138 0.0375 2.05 60.9 True 222 0.291 178 0.484 5.28 0.00529 0.00764 0.14 0.0387 2.14 86.3 True 483 0.273 234 0.234 2.3 0.00521 -0.0233 0.152 0.0361 2.27 79.5 True 649 0.328 69.3 0.545 0.68 0.00568 0.0227 0.0797 0.0264 2.15 96 True 201 0.137 418 0.332 3.75 0.006 0.000482 0.22 0.0488 2.04 50.7 True 838 0.439 GGGGGGGGGTGGGGGGGGGGGGGGGGGGG 0.981 3
1 m0_p1 1 307 100 93.3 93.3 100 100 100 93.3 100 105 0.236 0.842 0.00563 0.0455 0.354 0.000627 1.99 55 True 224 0.663 85.2 0.251 0.752 0.00567 0.0647 0.254 0.00118 2.1 51.3 True 193 0.443 100 0.136 0.661 0.00523 0.0204 0.206 0.00161 1.99 78.8 True 284 0.391 76.1 0.196 0.607 0.00511 -0.0279 0.258 0.00133 2.05 42 True 236 0.543 123 0.125 0.834 0.00511 0.0122 0.276 0.00138 2.07 41.2 True 353 0.539 157 0.0945 0.883 0.00505 -0.0398 0.28 0.00123 2.02 82.2 True 529 0.601 45.4 0.209 0.366 0.00532 0.0371 0.139 0.00313 2 24 True 153 0.241 553 0.206 4.58 0.0057 0.00124 0.401 0.00118 2.01 22 True 1.02e+03 0.801 GGTGGGGGAGGGGC 1.54 1
2 m0_p2 2 276 60 6.67 6.67 80 86.7 80 6.67 80 131 0.192 1.68 0.00555 0.0245 0.132 0.000735 2.12 103 True 332 0.24 73.3 0.544 1.46 0.00825 0.031 0.122 0.000137 2.04 45 True 161 0.213 98.8 0.113 0.629 0.00507 0.0137 0.0771 0.000953 1.96 79.7 True 331 0.141 76.6 0.13 0.447 0.00507 -0.00478 0.106 0.000657 2.23 110 True 276 0.216 1.33e+03 0.621 44.5 0.0114 0.0111 0.168 4.3e-05 2.04 24.7 True 2.17e+03 0.326 631 0.107 3.48 0.0053 -0.00563 0.121 0.00121 2.11 105 False 1.87e+03 0.247 24.5 0.264 0.172 0.00502 0.0196 0.0501 0.002 nan nan nan 126 0.0805 254 0.135 2.74 0.00537 0.00284 0.121 0.000512 2.07 69.2 True 641 0.24 CCGCCGGCCGGCGCGGCCGCGCGGGCCGCAACTCTCGCGAGAGC 0.504 2
3 m0_p4 0 210 40 46.7 73.3 46.7 60 46.7 73.3 53.3 124 0.291 0.904 0.00562 0.0179 0.124 0.0178 1.98 55.4 True 254 0.23 491 0.367 4.77 0.00597 0.0317 0.147 0.0171 2.02 37 True 772 0.263 558 0.286 7 0.00617 0.0142 0.128 0.0222 1.98 20.1 True 920 0.242 55.8 0.255 0.364 0.00511 -0.00264 0.0842 0.0162 1.95 55 True 158 0.171 164 0.147 0.957 0.00515 0.0103 0.0856 0.0157 2 89.3 True 442 0.161 164 0.175 1 0.00523 -0.00551 0.0997 0.0159 2.01 48.4 True 389 0.205 166 0.35 2.04 0.00594 0.0182 0.102 0.02 2.04 32.5 True 305 0.186 104 0.24 0.677 0.00497 -0.00102 0.0842 0.016 1.83 56.2 True 277 0.169 GGACCTGGAGGCCAGCATCGGCTTTGATATGCTAATAGGCACCTTAGGTACCCATTTGT 0.511 4
4 m0_p8 0 164 46.7 40 86.7 40 66.7 40 86.7 60 146 0.242 0.994 0.00532 0.0199 0.126 0.00186 1.99 46.3 False 310 0.232 500 0.218 3.82 0.00553 0.0356 0.148 0.00473 1.96 41.9 True 800 0.261 904 0.343 15.7 0.00686 0.0172 0.138 0.00506 2 22.4 True 1.47e+03 0.258 131 0.236 0.866 0.00508 -0.00215 0.0835 0.00144 2.12 58.5 True 324 0.169 231 0.13 1.26 0.0051 0.0124 0.087 0.00129 2.05 95.7 True 646 0.162 206 0.139 1.22 0.00512 -0.00462 0.0998 0.00155 2.02 63.8 True 526 0.204 284 0.669 8.03 0.00894 0.0204 0.111 0.00504 2.02 35.8 False 467 0.201 167 0.188 1.02 0.00514 -0.000393 0.0852 0.000336 2 84.5 True 448 0.171 TTGGAACCTTTTCCGGGATATTGTGATTATTTGCATCACAATGCACACGCTGGACTCCA 0.425 8
5 m0_p0 0 3.94e+03 93.3 100 100 93.3 93.3 93.3 100 86.7 142 0.0858 0.8 0.0052 0.05 0.273 0.012 2 73.4 True 291 0.496 391 0.192 2.59 0.00567 0.0912 0.323 0.0147 2 45.7 True 623 0.554 655 0.284 11.3 0.00678 0.0488 0.309 0.0156 2 28.7 True 1.09e+03 0.569 83.3 0.0335 0.371 0.00502 -0.00362 0.185 0.0106 2.03 87.2 True 241 0.373 178 0.0285 0.817 0.00502 0.0341 0.19 0.0103 1.99 69 True 505 0.347 180 0.0327 0.811 0.00502 -0.00702 0.214 0.0106 2.01 77.5 True 476 0.435 220 0.401 4.18 0.00746 0.0516 0.248 0.0154 2.01 40.2 True 382 0.445 105 0.0379 0.459 0.005 0.000297 0.182 0.00996 2.01 86.7 True 302 0.363 ATTTGCATAACAAAGG 1.11 0
6 m0_p9 0 81 6.67 13.3 80 6.67 13.3 6.67 66.7 20 83.7 0.473 0.747 0.00538 0.0182 0.109 0.00579 1.92 39.3 True 183 0.199 333 0.278 3.14 0.00495 0.0332 0.13 0.00715 1.94 48.9 False 604 0.227 754 0.528 20.2 0.00901 0.0156 0.13 0.00977 1.96 23.6 True 1.25e+03 0.244 167 0.352 1.39 0.00524 -0.00249 0.0746 0.00469 2.03 67.6 True 411 0.152 175 0.271 1.47 0.0051 0.0111 0.0791 0.00486 1.99 60.2 True 509 0.147 145 0.318 1.06 0.00505 -0.00513 0.0886 0.00462 1.93 54.9 True 349 0.182 344 0.838 9.81 0.0101 0.019 0.101 0.00979 2.04 25.5 True 541 0.183 66.7 0.625 0.679 0.00514 -0.0011 0.077 0.00448 1.9 6.68 True 191 0.155 TTAGGAGATTATTTGTGTAAAAGGGTGTAATTTGCATAACAATGGGGGCATCTTACGACTCACAATC 0.446 9
7 m0_p13 6 78 20 53.3 33.3 26.7 20 26.7 53.3 13.3 165 0.394 1.31 0.00533 0.0164 0.115 0.0121 2.06 43.8 True 331 0.213 447 0.423 3.32 0.00583 0.0293 0.153 0.015 2.06 29.4 False 692 0.276 789 0.496 10 0.0064 0.0128 0.109 0.0155 2.06 25.6 True 1.24e+03 0.205 90 0.5 0.776 0.00534 -0.00296 0.0798 0.0106 1.9 27.8 True 249 0.163 162 0.292 1.25 0.00521 0.00905 0.0783 0.0102 2.09 39.1 True 485 0.148 197 0.239 1.38 0.00518 -0.00613 0.0969 0.00998 2.16 33.6 True 500 0.2 382 0.885 6.3 0.00859 0.0169 0.0959 0.016 2.09 24.4 True 567 0.175 116 0.446 1.02 0.00521 -0.00123 0.074 0.00919 1.99 47.4 True 314 0.149 TCTGAACTGCTAGTTCCGTCTTTTGTAATGCTTAATTAGTTACTGAATAGGTAACTTCCTTACTGCATTC 0.698 13
8 m0_p10 6 92 26.7 60 40 33.3 26.7 33.3 60 26.7 173 0.493 1.61 0.00608 0.0173 0.117 0.0188 1.89 37.7 True 338 0.216 589 0.767 8.96 0.00796 0.0318 0.157 0.0228 1.93 28.5 True 857 0.282 556 0.524 8.3 0.00678 0.0135 0.113 0.023 1.94 29.7 True 930 0.213 73.2 0.605 0.712 0.00554 -0.00286 0.0821 0.0177 1.97 16 False 199 0.167 188 0.3 1.48 0.00542 0.00992 0.0803 0.0165 1.96 44.3 True 553 0.151 244 0.382 2.1 0.00586 -0.00607 0.0989 0.018 1.94 29.2 True 528 0.204 239 0.838 6.38 0.0089 0.0179 0.0988 0.0222 1.9 36.8 True 400 0.18 76.6 0.585 0.728 0.00551 -0.0018 0.0769 0.0162 1.95 16.2 True 237 0.156 CCCTGAGCTGCTGGCTCTGTCTTTTGTAATGCTTAATTAGTTACTGAATAGGTAACTTTCTTACTGAATT 0.779 10
9 m0_p5 3 116 66.7 66.7 46.7 53.3 46.7 53.3 33.3 73.3 124 0.412 1.29 0.00549 0.0147 0.132 0.00187 2.12 39.4 False 234 0.249 405 0.911 10.1 0.00963 0.0265 0.167 0.00454 2.07 29.5 True 590 0.308 395 0.428 3.95 0.00598 0.0111 0.112 0.00295 2.03 22.1 True 686 0.213 103 0.399 0.862 0.00529 -0.00266 0.0869 0.00197 2.05 23.7 True 223 0.176 212 0.325 1.86 0.00511 0.00805 0.084 0.00159 2.08 42 True 569 0.16 204 0.363 2.18 0.00535 -0.00567 0.107 0.00216 2.1 31.4 True 422 0.221 164 0.616 3.06 0.00697 0.0152 0.0919 0.00313 2.15 28.1 True 286 0.169 158 0.533 1.44 0.00541 -0.00142 0.0912 0.00191 2.07 39.2 True 314 0.184 ACCGGGAGCTCTAAGTCTAAGCTTGATCGTTGCTAATTTGCAATTGAATGGAGTACCTGGACTTCCCCAA 0.977 5
10 m0_p14 4 63 13.3 33.3 26.7 13.3 6.67 20 26.7 6.67 124 0.585 1.29 0.00592 0.0145 0.108 0.0186 2.05 30.4 True 269 0.201 1.31e+03 0.484 15.5 0.00599 0.0269 0.142 0.0206 2.05 33.8 True 1.81e+03 0.258 848 0.345 8.44 0.00593 0.0115 0.108 0.0234 2 21.7 False 1.44e+03 0.205 92.6 0.586 0.802 0.00514 -0.00291 0.0746 0.018 nan nan nan 320 0.152 250 0.298 1.79 0.00522 0.00813 0.0758 0.0181 2.04 33.3 True 671 0.144 355 0.295 3.11 0.00527 -0.00586 0.0957 0.0184 2 20.3 False 766 0.197 363 0.51 3.75 0.00608 0.0154 0.0883 0.0226 2.03 20.4 True 570 0.161 95.6 0.589 0.937 0.00535 -0.00173 0.073 0.0178 2.06 21 True 268 0.148 TTTGTGCACTGTGTAAGTTTTGTGCTCTTGGTATTCAAATGCTGATTTCTGTGCCCAGAAATCTGGTT 0.8 14
11 m0_p6 4 89 33.3 26.7 53.3 20 33.3 13.3 20 46.7 99.7 0.487 1 0.00563 0.017 0.121 0.0141 1.99 34.9 True 226 0.225 386 0.693 7.1 0.00871 0.0294 0.142 0.0129 2.02 39.7 True 559 0.254 439 0.443 6.43 0.00697 0.0129 0.114 0.0172 2.01 15.7 True 741 0.214 80.4 0.552 0.871 0.00551 -0.00274 0.0794 0.0134 2.01 22 False 198 0.162 137 0.339 1.21 0.00535 0.0094 0.0814 0.0136 2.09 64.4 True 383 0.154 134 0.321 1.23 0.0053 -0.00549 0.0924 0.0133 1.92 67 True 371 0.19 117 0.648 2.33 0.00736 0.0169 0.0885 0.0145 2.07 29.9 True 236 0.16 102 0.466 0.938 0.00521 -0.0011 0.0812 0.0134 2.11 2 False 240 0.164 CAACCCCTTCTGGGAAAGCAGAATTAGCATCAGAATACAAACAGCACCAGGGCAATCCACAACAGGT 0.782 6
12 m0_p11 7 120 80 80 60 60 73.3 66.7 80 66.7 231 0.462 2.27 0.00615 0.0179 0.148 0.00974 2.03 38 True 374 0.278 1.5e+03 0.795 30.3 0.00868 0.0304 0.18 0.0107 2.01 26.1 True 1.96e+03 0.33 1.01e+03 0.405 9.89 0.00624 0.0136 0.115 0.0119 2 26.6 True 1.62e+03 0.215 71.3 0.469 0.717 0.00527 -0.00214 0.088 0.00853 2.02 39.5 False 184 0.178 185 0.212 1.23 0.0051 0.0101 0.0871 0.00823 2.14 53.7 True 502 0.164 276 0.228 1.95 0.00521 -0.00484 0.113 0.00822 2.11 44.4 True 589 0.231 330 0.544 3.76 0.00658 0.0175 0.104 0.0126 2.06 41.5 True 531 0.19 105 0.367 0.862 0.00501 -0.000452 0.0866 0.00909 2.01 79.1 True 291 0.174 GTCTCAGAGAAGAGCAGCGGTAGTTGACATAACAATAGAGCCATCTAAATCGGAAGGCTACACCCCAGGT 1.06 11
13 m0_p12 8 66 73.3 73.3 13.3 66.7 40 60 46.7 40 337 0.547 3.23 0.00675 0.0163 0.135 0.00222 2.08 43.7 True 550 0.254 1.21e+03 0.802 19.2 0.0086 0.0278 0.178 0.00462 2.07 16.5 True 1.56e+03 0.328 432 0.337 3.95 0.00582 0.0114 0.0983 0.00258 2.01 31.2 True 751 0.185 123 0.479 1.17 0.00544 -0.00253 0.0884 0.00207 2.03 39.2 True 325 0.179 295 0.414 2.84 0.00539 0.0086 0.0816 0.0017 2.01 36.5 True 736 0.155 426 0.285 3.28 0.00564 -0.00558 0.109 0.00245 2.02 39.8 True 963 0.224 250 0.716 3.27 0.00792 0.0159 0.095 0.00351 2.09 36.1 True 412 0.174 299 0.522 2.67 0.00567 -0.000756 0.0811 0.00173 1.96 48.3 True 808 0.163 AGCCCTCCGGCTCTGCAGCCTTCCTCACTCAAGGGGTTCATTGTTCTTTTATTGCTGAGATTAGTCAT 0.449 12
14 m0_p7 5 136 53.3 86.7 20 73.3 53.3 73.3 40 33.3 242 0.408 2.95 0.00677 0.0151 0.126 0.0123 2.01 39.5 True 447 0.237 2.39e+03 0.962 52.1 0.0111 0.0283 0.205 0.0209 1.98 24.7 True 2.95e+03 0.381 262 0.336 2.83 0.00623 0.0111 0.0996 0.0135 1.99 26.3 True 525 0.188 128 0.311 1.19 0.00573 -0.00305 0.0884 0.0114 2.02 40.8 False 323 0.18 263 0.252 2.25 0.00587 0.00805 0.0843 0.0103 2 34.9 True 703 0.16 559 0.386 7.46 0.00694 -0.00656 0.12 0.0126 2.01 26.5 True 1.06e+03 0.246 367 0.624 5.83 0.00762 0.0159 0.0936 0.0147 1.98 29.5 True 551 0.171 89.5 0.411 0.783 0.00562 -0.00215 0.0798 0.0102 1.94 81.1 True 252 0.162 GTCTTGTTAAGACCCTGAATAGAGCAATGATGGCTCTTTTGTTAGTCTTATGTATGCTCTTCGA 0.364 7

Column description

Table interaction options