idx pattern logo
pwm		 logo
imp		 n
seqlets		 Nanog
pos
meandiff		 Nanog
pos
std		 Nanog
pos
unimodal		 Oct4
pos
meandiff		 Oct4
pos
std		 Oct4
pos
unimodal		 Sox2
pos
meandiff		 Sox2
pos
std		 Sox2
pos
unimodal		 consensus Oct4
region
counts		 Oct4
footprint
counts		 Oct4
footprint
max		 Oct4
footprint
strandcor		 Nanog
footprint
strandcor		 Nanog
footprint
entropydiff		 Nanog
footprint
max		 Nanog
footprint
counts		 Nanog
region
counts		 Sox2
region
counts		 Sox2
footprint
counts		 Sox2
footprint
max		 ic
pwm
mean		 Sox2
footprint
strandcor		 Sox2
footprint
entropydiff		 Klf4
footprint
entropydiff		 Oct4
footprint
entropydiff		 Klf4
footprint
strandcor		 Sall4
footprint
entropydiff		 Klf4
footprint
max		 Klf4
footprint
counts		 Klf4
region
counts		 Nanog
periodicity
10bp		 Sox2
periodicity
10bp		 Oct4
periodicity
10bp		 Sall4
periodicity
10bp		 Klf4
periodicity
10bp		 Sall4
region
counts		 Sall4
footprint
max		 Sall4
footprint
counts		 Sall4
footprint
strandcor		 Sall4
imp
profile		 Klf4
imp
profile		 Klf4
imp
counts		 Sox2
imp
profile		 Nanog
imp
counts		 Sall4
imp
counts		 Sox2
imp
counts		 Oct4
imp
counts		 Oct4
imp
profile		 Nanog
imp
profile
19 m0_p19 110 1.83 108 True 2.09 156 True 1.7 231 True CGCCCGCCCGCGCCGGCCCGCCCAGATCTCGCGAGAGTTCGGGCGCCCGCCCCCGGCGC 429 120 0.785 0.00521 0.00752 0.4 2.15 116 265 141 29.1 0.234 0.374 0.00508 0.238 0.136 0.0915 0.00561 0.463 1.66 135 390 0.0318 0.0299 0.032 0.0341 0.0315 3.43e+03 53.6 1.97e+03 0.00945 0.0121 0.00921 0.00846 0.00543 0.0103 0.00796 0.00761 0.0101 0.00836 0.0151
28 m0_p28 63 1.92 28.8 True 1.98 29.2 True 1.93 37.4 True TGGTAGGGAACTGTTGTGGATGGCCCTGGTGCTGTTTGTATTTTGATGCTAATTCTGCTTTCCCAGGA 565 306 4.59 0.00654 0.0117 1.07 15.7 649 879 228 110 1.55 1.23 0.00718 0.661 0.648 0.481 0.00695 0.417 1.08 86.3 180 0.00438 0.00105 0.00254 0.00395 0.00472 306 1.09 105 0.00577 0.00391 0.00437 0.00683 0.00707 0.0121 0.00782 0.00841 0.0108 0.00875 0.0169
26 m0_p26 93 2.02 38.4 True 2.03 60.7 True 2.1 43.5 True CTAGAAAAGCTCAGGGCTAGTCTGCATAGTAATTACTTAGGACAATAGCCGAGTCACACCCAAACACAGG 534 241 2.18 0.00533 0.00672 0.483 7.58 492 763 376 221 7.93 1.48 0.0108 0.78 0.654 0.342 0.00749 0.303 2.54 139 256 0.00535 0.00514 0.00299 0.000534 0.0021 436 0.941 126 0.00496 0.00271 0.00611 0.00761 0.00623 0.0104 0.007 0.00692 0.00821 0.00344 0.0121
17 m0_p17 146 2.21 25.3 True 2.2 61.7 True 2.33 49.2 True AAATTTACTTCTAGTAGAGACAGTGAAACTAATTAGGCATTACAAAGAACAGAGCTAGAATAGCTCAGGG 636 286 3.09 0.00535 0.00642 0.58 6.16 485 800 393 200 3.55 1.31 0.00716 0.719 0.519 0.348 0.00563 0.249 1.4 125 279 0.00646 0.0114 0.00969 0.00698 0.00593 528 1.1 151 0.00485 0.00189 0.00128 0.0048 0.00431 0.0095 0.00601 0.00658 0.0081 0.00422 0.00721
14 m0_p14 215 1.99 37.8 True 2.03 69.8 True 1.92 37.5 True TTCCCCTGTTTGGGTGAGACTTGGCTATTGTCCTAAGTAATCACTATGCAGACTAGCCCTGAGCTTTTCT 556 250 2.58 0.00516 0.00604 0.398 4.88 475 725 406 236 5.7 1.04 0.00845 0.668 0.362 0.315 0.0058 0.222 1.32 128 262 0.00068 0.00131 2.34e-05 0.000449 0.00294 497 0.97 147 0.00512 0.00262 0.004 0.00599 0.00465 0.00905 0.00581 0.00593 0.00666 0.00251 0.012
21 m0_p21 124 1.98 32.7 True 1.98 45.5 True 2.01 41 True TCTGCAAAGTTATTACTTAGGACAATAGCCCAGTCTCACCCAAACAAGGGAATACACAATGGCCTAGCGA 551 248 1.58 0.0051 0.0064 0.424 4.9 571 852 384 222 4.19 0.842 0.00698 0.505 0.297 0.229 0.00557 0.19 1.13 141 289 0.00473 0.00622 0.00406 0.00172 0.00386 513 1.13 161 0.00509 0.00257 0.00275 0.00589 0.00644 0.0109 0.00642 0.00683 0.00768 0.00317 0.0145
16 m0_p16 176 1.98 46 False 2.01 59.6 False 1.98 46.9 True GTCCCACCCAAACACAGGAATACACAATGGCCTAGAAAATAGGTGGGTTAACAGGTGAATTTATAATGAA 529 215 1.48 0.00486 0.00546 0.398 3.37 379 626 359 195 4.09 0.809 0.00754 0.575 0.349 0.239 0.00546 0.157 1.36 121 246 0.00284 0.00438 0.00453 0.0011 0.00176 474 0.739 142 0.00511 0.00201 0.00405 0.00603 0.0037 0.00813 0.00556 0.00547 0.00613 0.00176 0.0086
10 m0_p10 261 2.09 53.5 True 2.06 42.7 True 2.02 86.9 True TCCTTGTTGGCAGCCCCTCCTGGGAGAGCAGAATTAGCATCAAAATACAAACAGCACCAGGGCCATCCAC 598 303 3.6 0.00581 0.00708 0.471 5.73 315 512 222 94.3 1.12 0.695 0.00553 0.28 0.191 0.272 0.00525 0.127 0.777 96.5 219 0.0175 0.022 0.0229 0.0134 0.0114 399 0.777 125 0.00509 0.00345 0.0036 0.00648 0.00569 0.011 0.00738 0.0078 0.0101 0.00745 0.0114
13 m0_p13 232 2.1 46.3 True 2.07 77.2 True 2.1 41.6 True GGAGGTCAGAGTCTGAGCTTGATCGTTGCTAATTTGCAACTGAATGGAGTACCTGGACTTCCCCAAAAA 628 346 2.87 0.00579 0.00713 0.531 5.37 284 468 240 121 1.93 0.95 0.00638 0.339 0.244 0.3 0.00532 0.214 0.935 103 222 0.00749 0.0114 0.0204 0.00937 0.00315 497 1.28 171 0.00501 0.00355 0.00376 0.00643 0.00652 0.0121 0.00757 0.00823 0.0103 0.0078 0.0159
27 m0_p27 87 2.04 63.2 True 2.02 50.8 True 2.08 94.6 True CTTTGTTTCAGCTGGATTGAGTTGCAAAGCAAGCTCAGCAGGCAGTCAACTCCTCAAAGCTCCTGTAGGA 551 276 1.94 0.00535 0.00587 0.418 5.5 340 556 247 113 1.5 0.686 0.00517 0.34 0.299 0.204 0.00498 0.245 0.943 124 244 0.0032 0.00267 0.00404 0.00086 0.00157 441 0.937 154 0.00487 0.00321 0.00402 0.0064 0.00614 0.0113 0.00694 0.00742 0.00888 0.00566 0.0132
20 m0_p20 140 1.97 56.5 True 1.98 72.7 True 2.09 114 True TTGTGTACTGTGTTGAGCTTGTGCTTGTTGTATTCTGATGCTAATTTCTCTTCCCCAAGAGGGGTT 720 375 2.83 0.00533 0.00536 0.165 3.33 420 720 287 141 1.14 0.546 0.00539 0.224 0.153 0.185 0.0051 0.0887 0.761 131 301 0.00163 0.00115 0.00217 0.00025 0.00395 508 0.88 164 0.00503 0.00332 0.00326 0.00618 0.0059 0.0112 0.00725 0.00782 0.00998 0.00735 0.012
9 m0_p9 295 1.94 41.9 True 1.99 49.2 True 1.92 54 True AAAGCAACTGTGGTGGTTTGAATAAGAATGGCCCCCATAGGCTCATATATT 703 363 4.17 0.00588 0.00541 0.159 2.18 313 562 254 117 1.5 0.647 0.0062 0.293 0.111 0.223 0.00503 0.072 0.871 127 287 0.004 0.00524 0.00363 0.00131 0.00312 435 0.731 142 0.00507 0.00371 0.00358 0.00718 0.00868 0.0138 0.00879 0.00961 0.0127 0.00997 0.0123
11 m0_p11 265 2.01 50.7 True 1.97 47.6 True 1.98 43.9 True TTGAGGTTTGGTCTTTTGCTATGTATTGTAATGCTAAATTCTGTACCCCAAGGTCTAGTTGC 785 428 4.35 0.00556 0.00531 0.167 1.61 268 457 281 142 1.8 0.653 0.0058 0.315 0.159 0.201 0.00531 0.0791 0.558 82.5 190 0.0114 0.0212 0.0278 0.0204 0.00813 454 0.738 153 0.00511 0.00374 0.00373 0.00738 0.00774 0.0131 0.00877 0.00949 0.0128 0.0102 0.0102
8 m0_p8 469 2.01 51.6 True 1.99 43.6 True 2.03 57.6 False TCAAATATATGAGCCTATGGGGGCCATTCTTATTCAAACCACCACA 690 359 3.7 0.00584 0.00546 0.151 2.28 339 576 273 130 1.7 0.675 0.00613 0.271 0.0995 0.207 0.00514 0.0629 0.768 135 280 0.014 0.0294 0.0415 0.0288 0.0103 429 0.682 141 0.00505 0.00364 0.00349 0.00751 0.00904 0.0145 0.00907 0.00989 0.013 0.00981 0.0133
18 m0_p18 140 2.15 29.4 True 1.97 35.9 True 2.22 101 True GGGAGAACCTGGAGGCCAGGTCTGCTTTGATATGTTAAATAGGCACCTCAGCCCTTTGTCCTGG 769 394 3.18 0.00581 0.00515 0.199 1.31 194 388 235 102 0.77 0.669 0.00562 0.271 0.239 0.216 0.00515 0.129 1.06 159 347 0.00983 0.0156 0.0301 0.025 0.0136 598 1.04 193 0.00507 0.0035 0.00411 0.00726 0.00722 0.0124 0.00824 0.00878 0.0115 0.00878 0.0101
24 m0_p24 114 2.09 47.8 True 2.02 46.1 True 2.19 90.9 True AATCAAAAGGGAACCTGGAGTAAATGACTGAATTGATATGTAAATAAAAGACTGGGCTTTGGTCTTGAAG 884 398 3.12 0.00542 0.0059 0.417 3.2 334 597 304 136 1.46 1.01 0.00597 0.445 0.308 0.258 0.00482 0.216 0.881 123 383 0.0236 0.0241 0.0201 0.011 0.0165 734 1.52 212 0.00505 0.00237 0.00179 0.00526 0.00558 0.0115 0.00687 0.0077 0.00968 0.0059 0.0102
23 m0_p23 92 1.8 39.6 True 1.84 27.5 True 1.85 36.9 True AGTGAATTCTCACGTTTACCAGCTTTTGTTGTGCAAACCTTGTTCCTTAATTTAAAACTATTGGTTAAAT 926 470 7.03 0.00548 0.00516 0.289 1.74 204 426 386 211 5.71 1.01 0.00842 0.701 0.297 0.389 0.00484 0.242 0.549 73.1 180 0.0127 0.0255 0.0299 0.00907 0.00178 501 1.05 155 0.0049 0.00257 0.00163 0.00595 0.00867 0.0113 0.00735 0.00793 0.0103 0.00734 0.0082
15 m0_p15 218 1.99 40.5 True 1.98 62.9 True 1.98 49.6 True TGATGGGTCTTGTTAAGACCCTGAATACAGTAATCATGGGACCTTTGTTTATGCTTTGTTTGTTCCTT 504 218 1.5 0.00523 0.00953 0.857 31.2 1.23e+03 1.63e+03 381 216 3.39 0.343 0.00672 0.459 0.183 0.112 0.00512 0.118 1.12 139 309 0.0237 0.017 0.0232 0.0132 0.00812 583 1.44 197 0.00511 0.00257 0.00227 0.00492 0.00581 0.0108 0.00597 0.00657 0.00735 0.00383 0.0211
25 m0_p25 143 2.01 30.6 True 1.99 75.3 True 2 73.8 True CTTGATCATCCTTAGAAACAGCGATCACAGGAGTGATCATGGGGCTTTGTGTTTATTGTCTTGCTTGTTC 525 231 1.64 0.00498 0.00861 0.717 17 931 1.27e+03 372 201 2.37 0.371 0.00623 0.405 0.193 0.158 0.00533 0.126 0.955 109 257 0.00817 0.00276 0.00362 0.000257 7.97e-05 514 0.885 161 0.00511 0.00243 0.00206 0.00454 0.00479 0.0101 0.00556 0.00615 0.00671 0.00321 0.0189
1 m0_p1 4645 2 49.9 True 1.99 79.2 True 2 83.2 True AGCCATCAACACTATTTTTTTTTTTTTTTATTTTGATGGCTCTTTTT 564 254 1.2 0.00513 0.00626 0.284 5.81 601 923 264 116 0.544 0.102 0.0052 0.0577 0.0445 0.0379 0.00514 0.0155 0.572 134 302 0.0135 0.0237 0.0322 0.0304 0.0364 500 0.669 164 0.00503 0.00236 0.0022 0.00467 0.004 0.00944 0.00551 0.00592 0.00657 0.00316 0.0162
29 m0_p29 97 1.96 62.6 True 1.93 75.5 True 2.02 118 True CCTTTAACCTTAAATGATGCAGAACGTGACCTTGAACTCCTGATCCTCCGATCTCATTCT 686 307 1.89 0.00489 0.00488 0.15 3.34 468 856 300 137 1.24 0.262 0.00493 0.268 0.171 0.144 0.00508 0.0923 0.954 168 373 0.0277 0.0285 0.0214 0.0187 0.0155 622 1.22 216 0.00509 0.00261 0.00337 0.00548 0.00352 0.00828 0.00554 0.00557 0.00637 0.00313 0.011
22 m0_p22 139 2.03 57 True 1.98 71 True 2.03 41 True AATAGCCAGTCTTAACCAGACAAGTGAATAAACAATGGCCTAGTGAATAGGTGGGTTAACCATAAA 679 304 1.5 0.00498 0.00532 0.13 2.95 537 900 378 198 1.91 0.297 0.00532 0.195 0.135 0.0781 0.0052 0.0779 0.791 144 311 0.0236 0.0287 0.0252 0.0143 0.0154 582 1 191 0.00499 0.0023 0.00289 0.00549 0.00462 0.00937 0.00578 0.00602 0.00676 0.00272 0.0116
7 m0_p7 503 1.98 53.9 True 1.97 86.8 True 1.97 88.1 True AAGAGTTTAAATAGCTCTTAATGGCT 642 294 1.35 0.00504 0.00557 0.161 3.8 683 1.08e+03 283 120 0.574 0.355 0.00503 0.0578 0.0567 0.0376 0.00512 0.0257 0.664 153 340 0.00318 0.00448 0.00628 0.00199 0.00205 550 0.731 177 0.00499 0.00252 0.00268 0.00512 0.00493 0.0111 0.00598 0.00651 0.00698 0.00307 0.0188
4 m0_p4 1130 1.96 57.7 True 1.97 83 False 1.96 89.6 True ACAGGAAATGGCCCAT 578 250 1.21 0.00504 0.00572 0.181 3.73 528 844 270 113 0.472 0.677 0.00508 0.0486 0.049 0.0293 0.00514 0.025 0.544 131 304 0.0117 0.00969 0.00664 0.00248 0.00547 532 0.813 174 0.00504 0.00388 0.00658 0.00736 0.00548 0.0128 0.00739 0.0076 0.00845 0.00467 0.022
2 m0_p2 1925 1.96 54.6 True 1.98 70.7 True 1.99 69 True CTCTCAGCAGGTAGCAGTGT 591 276 1.51 0.00514 0.00547 0.146 2.86 503 805 285 135 1.02 0.675 0.00518 0.139 0.133 0.0518 0.00541 0.0353 1.67 247 447 0.00464 0.00518 0.00347 0.000995 0.00216 588 1.17 207 0.00506 0.00481 0.00943 0.00876 0.00603 0.0118 0.00764 0.00746 0.00857 0.00495 0.018
6 m0_p6 752 1.98 59.3 True 2.04 85.6 True 2.02 80.1 True GAGCAGGGGCAGGTGACAGAACAATAGAGCCATCTAGGTCGGAAGGCTCCACCCTAGGTGATCTCATTCT 500 231 1.59 0.00532 0.00742 0.571 8.8 534 808 293 154 2.71 0.799 0.00833 0.561 0.303 0.161 0.00585 0.111 2.78 350 561 0.0151 0.0129 0.00771 0.00269 0.00316 588 1.21 213 0.00503 0.00375 0.0078 0.00815 0.00855 0.0125 0.00789 0.00798 0.0095 0.00511 0.0189
12 m0_p12 247 2 67.9 True 1.95 114 True 1.95 93.7 True CTAGGGTGGAGCCTTCCTCCCTAGATCACTCTATTGTTCAGCCACTGCCGCTGTTCCTCTTCAAGATACT 400 150 0.915 0.00504 0.0059 0.307 4.2 428 704 279 137 2.48 0.833 0.00795 0.551 0.386 0.14 0.00579 0.134 4.78 478 718 0.0315 0.0542 0.0419 0.0155 0.0149 607 1.28 209 0.00506 0.00363 0.0111 0.0096 0.00593 0.0108 0.00763 0.0071 0.00833 0.0028 0.0126
3 m0_p3 1392 1.99 62.4 True 1.99 78.6 True 2.01 69.7 True CCATTGTT 612 278 1.15 0.00506 0.00542 0.125 2.88 574 933 362 185 2.11 1.2 0.00582 0.158 0.0347 0.034 0.00507 0.0169 0.568 141 318 0.0179 0.0234 0.0272 0.0144 0.0117 550 0.73 179 0.005 0.00639 0.011 0.017 0.0312 0.0388 0.0189 0.0212 0.0253 0.0138 0.0426
5 m0_p5 968 1.94 67 True 1.98 71.5 True 1.98 66.8 True CTATTCAAATGCAAATT 765 379 2.51 0.00525 0.00525 0.0774 1.88 410 736 294 137 1.19 0.88 0.00522 0.145 0.0496 0.0943 0.00507 0.0303 0.686 151 346 0.0341 0.0404 0.0504 0.0343 0.0225 601 0.812 191 0.005 0.00719 0.00708 0.0127 0.0196 0.0293 0.017 0.0193 0.0267 0.024 0.0252
0 m0_p0 6568 1.97 73.5 True 1.99 60.5 True 1.99 74.9 True CCTTTGTTATGCAAAT 818 431 5.51 0.00588 0.00524 0.0767 1.66 341 620 310 152 2.17 0.892 0.0062 0.223 0.0488 0.168 0.0051 0.0187 0.531 115 272 0.0196 0.0402 0.0566 0.0332 0.0206 497 0.632 158 0.00501 0.0105 0.0127 0.0202 0.0349 0.0427 0.0255 0.0287 0.0408 0.0384 0.0317

Column description

Table interaction options