idx pattern logo
pwm		 logo
imp		 n
seqlets		 Klf4
pos
meandiff		 Klf4
pos
std		 Klf4
pos
unimodal		 Nanog
pos
meandiff		 Nanog
pos
std		 Nanog
pos
unimodal		 Oct4
pos
meandiff		 Oct4
pos
std		 Oct4
pos
unimodal		 Sox2
pos
meandiff		 Sox2
pos
std		 Sox2
pos
unimodal		 consensus ic
pwm
mean		 Klf4
footprint
entropydiff		 Oct4
footprint
entropydiff		 Sox2
footprint
entropydiff		 Sall4
footprint
entropydiff		 Nanog
footprint
strandcor		 Nanog
footprint
entropydiff		 Nanog
footprint
max		 Nanog
imp
profile		 Sox2
imp
profile		 Nanog
imp
counts		 Oct4
imp
profile		 Sox2
imp
counts		 Oct4
imp
counts		 Sall4
imp
counts		 Sox2
footprint
strandcor		 Oct4
footprint
max		 Oct4
footprint
strandcor		 Nanog
region
counts		 Nanog
footprint
counts		 Sox2
footprint
max		 Sox2
footprint
counts		 Oct4
footprint
counts		 Oct4
region
counts		 Sox2
region
counts		 Sall4
periodicity
10bp		 Nanog
periodicity
10bp		 Sox2
periodicity
10bp		 Oct4
periodicity
10bp		 Klf4
periodicity
10bp		 Sall4
footprint
strandcor		 Sall4
footprint
counts		 Sall4
footprint
max		 Sall4
region
counts		 Sall4
imp
profile		 Klf4
imp
counts		 Klf4
imp
profile		 Klf4
footprint
counts		 Klf4
region
counts		 Klf4
footprint
max		 Klf4
footprint
strandcor
1 m0_p1 3345 1.98 88.8 True 2 83 True 1.99 49.8 True 2 64 True ATTTGCATAACAAAGG 1.04 0.0698 0.246 0.337 0.0255 0.00555 0.159 2.6 0.0441 0.0526 0.0566 0.0554 0.0385 0.0557 0.0346 0.00706 9.02 0.00644 714 432 3.56 201 586 1.02e+03 365 0.0427 0.0333 0.0574 0.0674 0.0258 0.00499 177 0.784 524 0.0152 0.0279 0.021 142 297 0.729 0.00514
17 m0_p17 84 2.08 132 True 1.92 67 True 1.96 42.5 True 1.95 51.6 True TATGTGACTCACTCCTTGTCTGCAGCCCCTCCCAGGAGAGCAGAATTAGCATCAAAATACAAACAGCACC 1.27 0.438 0.448 0.538 0.319 0.0106 0.893 10.1 0.00887 0.00567 0.0102 0.00756 0.00761 0.00998 0.00755 0.006 4.51 0.00588 614 368 1.97 110 301 595 235 0.018 0.00148 0.000561 0.0022 0.0302 0.00531 117 0.982 382 0.0036 0.00749 0.00518 116 235 1.14 0.00571
15 m0_p15 118 1.9 113 True 1.93 104 True 1.89 86.1 True 1.75 40.1 True TACTCTCCTAGGGCAAGGGCTTTCACACCCAAGTCATGGTTCTAACTAGGGAGTTCCGTTCTAGCTAACC 1.46 0.53 0.553 0.685 0.442 0.00548 0.38 1.94 0.00334 0.000874 0.00463 0.000761 0.00376 0.00418 0.00437 0.00526 2.18 0.00606 396 171 0.314 28.1 154 379 110 0.000644 0.000129 0.00133 0.00389 0.00244 0.00501 92.7 0.797 374 0.00163 0.00545 0.00354 146 339 1.37 0.00513
10 m0_p10 309 2 79.3 False 2.02 129 True 2.1 123 True 1.9 94.8 True AGCCCTTGCCCCTGGCTTCTAAGATTAAGCTGACCTTAGGTGGGGCTGCTTTTGATCCCAGTTGTTAACA 1.15 0.373 0.3 0.263 0.271 0.00497 0.284 1.67 0.00365 0.00115 0.00529 0.000899 0.00409 0.00456 0.0046 0.00503 0.73 0.00531 534 191 0.502 53.6 93.5 317 168 0.00705 0.00516 0.00206 0.00648 0.000908 0.00505 118 0.939 471 0.00148 0.00542 0.00319 205 470 2.53 0.00569
16 m0_p16 116 2.1 47.8 True 2.17 71.3 True 2.17 88.8 True 2.13 67.4 True TTGGAGGCGGGGATGCACACCTGCTGCAGTCAGGCTGAAGGGCGTTGACTGACCTGCTTGAAAAACAAAG 1.09 0.492 0.481 0.517 0.254 0.00545 0.412 1.62 0.00686 0.00281 0.00694 0.0023 0.00506 0.00582 0.00552 0.00493 2.03 0.00563 474 208 1.03 98.3 219 542 221 0.0244 0.0201 0.0348 0.0494 0.0092 0.00504 195 1.44 549 0.00254 0.00673 0.00663 235 448 2.62 0.00646
9 m0_p9 303 1.98 43.1 True 1.93 91.5 True 2.02 99 True 2.05 74.5 True AGGCTGACCTTGAACTCACAATTCT 0.65 0.143 0.0898 0.127 0.06 0.00534 0.128 2.82 0.0136 0.00501 0.0104 0.00472 0.007 0.00831 0.00743 0.00495 1.74 0.00513 678 375 0.785 130 294 629 291 0.043 0.0298 0.026 0.024 0.0375 0.0051 253 1.53 696 0.00435 0.00898 0.0098 216 404 1.14 0.00547
3 m0_p3 871 2.03 41 True 2.05 59.7 True 2.05 66.3 True 2.07 71.7 True ATATCTCAGGGGCCTCTCAGCAGGTAGCAGTATCTTGAA 0.469 0.203 0.0869 0.174 0.0565 0.00573 0.232 3.11 0.0138 0.00505 0.00992 0.00456 0.00667 0.00782 0.00677 0.00544 1.45 0.00522 678 449 1.08 128 246 507 258 0.0103 0.0183 0.0206 0.025 0.00921 0.00505 197 1.19 524 0.00397 0.00743 0.00713 253 413 1.77 0.00565
8 m0_p8 491 2.04 64.9 True 2.01 121 True 2.07 99.5 False 2.05 105 True CCCAGTGACACACTTCCTCCAACAAGGCCACACCTACTACAACAAGCCCACACTTCCTA 0.573 0.148 0.164 0.155 0.072 0.00464 0.181 1.19 0.00448 0.00171 0.00548 0.00158 0.00429 0.00493 0.00484 0.00469 1.24 0.00466 479 229 0.449 81.8 216 533 223 0.00418 0.00332 0.0153 0.0111 0.017 0.00494 124 0.696 399 0.00195 0.0058 0.00433 142 291 1.02 0.00519
7 m0_p7 558 2.03 67.4 True 1.91 114 True 1.93 95.3 True 1.85 106 True CAACAAGGCCACACCTTCTAATAGTGCCACTCCCTGGTCCCAAAATATTCAAA 0.409 0.121 0.0922 0.12 0.052 0.00504 0.129 1.57 0.00493 0.0014 0.00533 0.00152 0.00425 0.00492 0.00482 0.00492 1.07 0.00496 484 220 0.517 75.4 188 470 212 0.0124 0.00438 0.0155 0.00995 0.032 0.00501 140 0.791 442 0.002 0.00599 0.00478 169 341 1.38 0.0053
5 m0_p5 689 2.04 64.7 True 2.09 108 True 2.12 89.7 True 2.21 126 True TCCTAATAGTGCCACTCCCTGGGCCCAAAATATTCAAA 0.524 0.121 0.0782 0.101 0.0479 0.00499 0.121 1.76 0.00644 0.0018 0.00611 0.00212 0.00461 0.00529 0.00513 0.00507 1.16 0.00505 531 258 0.48 76 221 519 213 0.00408 0.00485 0.00343 0.00403 0.00583 0.00508 146 0.919 461 0.00254 0.00629 0.00597 184 358 1.54 0.00553
11 m0_p11 337 1.99 85.4 True 1.85 117 True 1.91 126 True 1.89 106 True AAAAAAATCATAAAGCCGGGTGGTGGTGGCCCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC 0.384 0.263 0.119 0.127 0.101 0.00482 0.161 1.27 0.00505 0.0016 0.0055 0.00157 0.00427 0.00493 0.00483 0.00508 1.06 0.00496 433 198 0.699 76.2 173 464 219 0.0022 0.00378 0.0012 0.000709 0.00915 0.00507 134 0.841 469 0.00193 0.00578 0.00416 172 353 1.53 0.00598
2 m0_p2 966 2.01 81.5 True 2.03 163 True 2.02 143 True 2.03 156 True CCCCTCCAACAAGGCCACACCCACTCCACCAAGCCCCCCCCCC 0.369 0.117 0.0764 0.0878 0.0517 0.00499 0.0521 0.597 0.00351 0.000656 0.00432 0.000908 0.00387 0.00463 0.0051 0.00487 0.779 0.00491 305 115 0.362 54.2 139 399 185 0.00115 0.00263 0.00497 0.00402 0.00126 0.00498 137 0.884 439 0.00222 0.00816 0.00987 182 386 1.33 0.0054
6 m0_p6 691 2 88.6 True 2.11 166 False 2.02 150 True 2.01 182 True AGTGGGGGTGGGGCTGTGGGTGTGGCC 0.637 0.111 0.0715 0.0796 0.0464 0.00475 0.148 1.07 0.00336 0.000318 0.00374 0.000718 0.00376 0.0047 0.00567 0.00487 0.679 0.00491 401 152 0.265 50.9 126 406 188 0.00419 0.00137 0.00362 0.00332 0.00126 0.00493 122 0.703 433 0.00278 0.0108 0.0152 184 390 1.1 0.00532
4 m0_p4 859 1.99 107 True 2 173 True 1.93 173 True 2 158 True GGGGTGGGGCGGGGC 1.27 0.123 0.0672 0.0705 0.0468 0.00504 0.0738 0.712 0.00386 -0.000887 0.00395 0.000322 0.00468 0.00679 0.00866 0.00501 0.784 0.00504 363 123 0.259 52.6 139 443 190 0.0076 0.00421 0.00659 0.00828 0.0187 0.00498 130 0.644 472 0.00426 0.0198 0.0306 173 404 1.32 0.00528
0 m0_p0 15954 2 85.8 True 2.02 143 False 2.01 156 True 2.01 154 True TGGGTGTGGC 1.22 0.168 0.0267 0.0475 0.0263 0.00499 0.0465 1.11 0.0087 0.000716 0.0052 0.00142 0.00548 0.00752 0.0105 0.00497 0.735 0.00503 442 187 0.394 65 137 417 203 0.0137 0.0109 0.00358 0.00996 0.0212 0.00503 144 0.775 482 0.00728 0.0265 0.0497 220 439 1.81 0.00577
13 m0_p13 182 1.99 94.9 True 2.08 140 True 2.02 164 True 2.07 122 True TGGGTGGGTGGGGC 1.38 0.162 0.104 0.224 0.0959 0.0049 0.149 1.51 0.0057 0.000164 0.00414 0.00106 0.00451 0.00607 0.00821 0.00506 0.76 0.00498 603 225 0.749 73.6 141 473 245 0.0121 0.00924 0.00192 0.00472 0.0196 0.00498 156 1.01 536 0.00533 0.0193 0.0314 186 412 1.56 0.00533
14 m0_p14 173 1.94 131 True 2.14 166 True 2.05 160 True 2.23 179 True TGCAGGGGGGGGCCCCACCCA 0.81 0.286 0.163 0.193 0.108 0.00478 0.216 1.86 0.0062 0.000677 0.00461 0.00149 0.00465 0.0061 0.00805 0.00528 1.88 0.00518 482 176 0.61 81.1 213 617 244 0.0031 0.000827 2.37e-05 0.00018 0.011 0.00513 170 1.17 601 0.00524 0.0182 0.034 240 513 2.79 0.00647
12 m0_p12 272 2.05 145 True 1.99 105 True 2.08 148 True 1.72 231 True GGCGCGCCAACTCTCGCGAGATCTGGGCGC 0.675 0.123 0.0782 0.173 0.5 0.00827 0.457 2.07 0.0283 0.0117 0.0188 0.017 0.0131 0.0181 0.013 0.00507 0.648 0.005 218 94.4 0.157 25.7 104 379 135 0.00213 0.00175 0.0023 0.00264 0.000753 0.0101 1.78e+03 52.6 3.1e+03 0.0233 0.0129 0.0149 134 382 1.76 0.00543

Column description

Table interaction options