Information for 7-GCAGAMTAGCYC (Motif 6)

A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
Reverse Opposite:
C T A G T C G A C A T G A G T C A G C T C T G A C A T G C G A T A G T C G A C T A C T G T A G C
p-value:1e-211
log p-value:-4.863e+02
Information Content per bp:1.596
Number of Target Sequences with motif167.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif15.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets97.9 +/- 49.4bp
Average Position of motif in Background146.2 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAGAMTAGCYC
BCAGACWA----
 A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAGAMTAGCYC
CCAGACRSVB--
 A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAGAMTAGCYC
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGAMTAGCYC
CCAGACAG----
 A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCAGAMTAGCYC
--GGATTAGC--
 A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAGAMTAGCYC
--AGATAAGA--
 A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCAGAMTAGCYC
ATGCCAGACN-----
 A C G T A C G T A C G T A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCAGAMTAGCYC
AAGAGGATTAG---
 A C G T A C G T A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCAGAMTAGCYC--
AGGGGGATTAGCTGCC
 A C G T A C G T A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCAGAMTAGCYC-
TCCCAGMCRAGCCCC
 A C G T A C G T A T C G T G A C C T G A T C A G G C T A G T A C G A C T T C G A T C A G G T A C A G C T G A T C A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C