Information for 4-CAGCAGGTAGCA (Motif 3)

A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
Reverse Opposite:
A G C T A C T G A G T C A C G T C G T A A G T C A G T C A G C T A C T G A G T C A C G T A C T G
p-value:1e-382
log p-value:-8.816e+02
Information Content per bp:1.980
Number of Target Sequences with motif209.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.0 +/- 52.5bp
Average Position of motif in Background112.1 +/- 70.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0155.1_Osr2_2/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGGTAGCA---
NNTGTAGGTAGCANNT
 A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A A C G T A C G T A C G T
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGGTAGCA---
NNNTTAGGTAGCNTNT
 A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A A C G T A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGTAGCA
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGTAGCA
CACAGCAGGGGG--
 A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGTAGCA
DCTCAGCAGG-----
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGTAGCA
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGTAGCA
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGCAGGTAGCA
GAGCAACAGGTGGTT
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGTAGCA
GAGCACAGCAGGACA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CAGCAGGTAGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C T C G A C T A G A C T G A C G T C G T A T C A G A G T C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T