Information for 25-GATYGTTGCTAA (Motif 25)

A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A A C T G A G T C C T G A C G T A A G T C T C A G C G T A A C G T A G T C
p-value:1e-81
log p-value:-1.886e+02
Information Content per bp:1.822
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets108.7 +/- 41.4bp
Average Position of motif in Background99.1 +/- 70.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GATYGTTGCTAA----
-NCCGTTGCTANGNGN
 A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GATYGTTGCTAA----
-NNCGTTGCTATGGNN
 A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GATYGTTGCTAA--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GATYGTTGCTAA--
--CTGTTGCTAGGS
 A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GATYGTTGCTAA
-ATTGTTA----
 A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GATYGTTGCTAA
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PH0044.1_Homez/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GATYGTTGCTAA-
AAAACATCGTTTTTAAG
 A C G T A C G T A C G T A C G T A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GATYGTTGCTAA-
TAATTGTTCTAAAC
 A C G T A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GATYGTTGCTAA
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A C G T A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GATYGTTGCTAA----
-ACCGTGACTAATTNN
 A C T G G T C A A C G T A G T C T C A G C G A T A G C T C T A G A G T C C A G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A