Information for 20-AGGGGAATTCCC (Motif 20)

C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C
Reverse Opposite:
A C T G C T A G C T A G G T C A C G T A C A G T A G C T A G T C A G T C G T A C A G T C A C G T
p-value:1e-109
log p-value:-2.516e+02
Information Content per bp:1.801
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets100.6 +/- 59.2bp
Average Position of motif in Background78.6 +/- 67.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AGGGGAATTCCC
NGGGGATTTCCC
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:AGGGGAATTCCC
--GGGAATTTCC
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AGGGGAATTCCC
--GGGAATTTCC
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AGGGGAATTCCC
--GGGGATTTCC
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:AGGGGAATTCCC-
AGGGGAATCCCCT
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGGGGAATTCCC-
AGGGGAATCCCCT
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AGGGGAATTCCC--
--GGGGATTCCCCC
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C A C G T A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGGGGAATTCCC
-GGGGATTTCC-
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGGGAATTCCC---
TTAAGGGGATTAACTAC
 A C G T A C G T C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGGGAATTCCC----
AGGGGGATTAGCTGCC
 C G T A C T A G A C T G A C T G T C A G C T G A G C T A C G A T A C G T G A T C G A T C T A G C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C