Information for 2-NDNVACAAWGGV (Motif 2)

C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
Reverse Opposite:
A C T G A T G C G A T C G C A T A G C T C A G T T A C G C G A T A T C G C G A T G C A T G A T C
p-value:1e-1519
log p-value:-3.498e+03
Information Content per bp:1.528
Number of Target Sequences with motif4073.0
Percentage of Target Sequences with motif43.35%
Number of Background Sequences with motif4031.4
Percentage of Background Sequences with motif10.05%
Average Position of motif in Targets100.6 +/- 45.5bp
Average Position of motif in Background99.1 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:NDNVACAAWGGV
---RACAAWGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:NDNVACAAWGGV
---AACAAAGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:NDNVACAAWGGV
--GAACAATGGN
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.91
Offset:2
Orientation:forward strand
Alignment:NDNVACAAWGGV
--RAACAATGGN
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:NDNVACAAWGGV
-RNAACAATGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:NDNVACAAWGGV
-VRRACAAWGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:NDNVACAAWGGV
-AAAACAAAGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:NDNVACAAWGGV
-VRAACAATGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:NDNVACAAWGGV
-AAAACAATGG-
 C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-NDNVACAAWGGV--
CTCACACAATGGCGC
 A C G T C T A G C G T A G C T A T A G C G C T A A T G C G C T A T C G A C G T A C T A G T A C G T G A C A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C