Information for 9-GGACARTASC (Motif 12)

C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C
Reverse Opposite:
A C T G A T G C C A G T C G T A A G C T A G C T A C T G C G A T A G T C A G T C
p-value:1e-160
log p-value:-3.687e+02
Information Content per bp:1.803
Number of Target Sequences with motif167.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif31.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets103.4 +/- 48.5bp
Average Position of motif in Background106.8 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGACARTASC----
ATGTACAGTAGCAAAG
 A C G T A C G T C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGACARTASC----
ATTTACAGTAGCAAAA
 A C G T A C G T C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGACARTASC
-GACAATGNN
 C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GGACARTASC--
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGACARTASC--
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGACARTASC
RAACAATGGN
 C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGACARTASC--
NAGGTCANTGACCT
 A C G T A C G T C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGACARTASC
GAACAATGG-
 C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGACARTASC
GGAAATTCCC
 C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGACARTASC
AGGTCA-----
 A C G T C T A G A C T G C G T A G T A C C T G A C T G A A C G T G C T A A T C G A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T