Information for 1-TTTGCATRACAA (Motif 1)

G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
Reverse Opposite:
A G C T C G A T A T C G C G A T A G C T C G T A A C G T C A T G A G T C G C T A C T G A C G T A
p-value:1e-2034
log p-value:-4.684e+03
Information Content per bp:1.649
Number of Target Sequences with motif3152.0
Percentage of Target Sequences with motif33.55%
Number of Background Sequences with motif1461.1
Percentage of Background Sequences with motif3.64%
Average Position of motif in Targets100.2 +/- 42.0bp
Average Position of motif in Background100.4 +/- 64.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATRACAA--
ATTTGCATAACAAAG
 A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATRACAA--
ATTTGCATAACAATG
 A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATRACAA
ATTTGCATAA---
 A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTTGCATRACAA
BTVATTWGCATA----
 A C G T A C G T A C G T A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTGCATRACAA
TAATTTGCATAA---
 A C G T A C G T A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATRACAA
ATTTGCATA----
 A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TTTGCATRACAA
TTCATTTGCATAT---
 A C G T A C G T A C G T A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCATRACAA
AATTTGCATANT--
 A C G T A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCATRACAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCATRACAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T A C G T G C A T G A C T C G A T T C A G G T A C C G T A G C A T T C G A G C T A T A G C C G T A T C G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T