Goal

  • investigate the motif instances
In [1]:
exp = 'nexus,peaks,OSNK,0,10,1,FALSE,same,0.5,64,25,0.004,9,FALSE,[1,50],TRUE'
In [2]:
from basepair.imports import *

Using TensorFlow backend.
In [3]:
from basepair.imports import *
from basepair.exp.paper.config import *
In [4]:
# figures dir
model_dir = models_dir / exp
In [13]:
ls {model_dir}/

activity/
benchmark/
calibrated.pkl
calibrated_seqmodel.pkl
config.gin
config.gin.json
deeplift/
deeplift.imp_score.h5
evaluation.valid.json
events.out.tfevents.1552394698.sh-112-11.int
history.csv
imp_score_deeplift.smk-benchmark.tsv
log/
model.h5
note_params.json
null.deeplift.imp_score.h5
perturbation-analysis/
preds.test.pkl
seq_model.pkl
test.pkl
train.smk-benchmark.tsv
wandb.json