In [1]:
from pathlib import Path
from basepair.cli.schemas import DataSpec, HParams
Using TensorFlow backend. 2018-11-08 14:24:09,004 [WARNING] doc empty for the `info:` field
In [2]:
model_dir_name = "model_1"
model_dir = Path(model_dir_name)
hp = HParams.load(model_dir / "hparams.yaml")
ds = DataSpec.load(model_dir / "dataspec.yaml")
tasks = list(ds.task_specs)
In [3]:
tasks
Out[3]:
['CAGE']
In [4]:
from keras.models import load_model
from basepair.BPNet import BPNetPredictor, BiasModel
from basepair.losses import MultichannelMultinomialNLL, mc_multinomial_nll_2, mc_multinomial_nll_1, twochannel_multinomial_nll
model = load_model(str(model_dir / "model.h5"),
custom_objects={"mc_multinomial_nll_1": mc_multinomial_nll_1,
"mc_multinomial_nll_2": mc_multinomial_nll_2,
"mc_multinomial_nll": mc_multinomial_nll_1,
"MultichannelMultinomialNLL": MultichannelMultinomialNLL(1),
"twochannel_multinomial_nll": twochannel_multinomial_nll})
WARNING:tensorflow:From /users/amr1/miniconda3/envs/basepair/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py:497: calling conv1d (from tensorflow.python.ops.nn_ops) with data_format=NHWC is deprecated and will be removed in a future version. Instructions for updating: `NHWC` for data_format is deprecated, use `NWC` instead
2018-11-08 14:24:10,732 [WARNING] From /users/amr1/miniconda3/envs/basepair/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py:497: calling conv1d (from tensorflow.python.ops.nn_ops) with data_format=NHWC is deprecated and will be removed in a future version. Instructions for updating: `NHWC` for data_format is deprecated, use `NWC` instead
WARNING:tensorflow:From /users/amr1/miniconda3/envs/basepair/lib/python3.6/site-packages/tensorflow/contrib/learn/python/learn/datasets/base.py:198: retry (from tensorflow.contrib.learn.python.learn.datasets.base) is deprecated and will be removed in a future version. Instructions for updating: Use the retry module or similar alternatives.
2018-11-08 14:24:18,071 [WARNING] From /users/amr1/miniconda3/envs/basepair/lib/python3.6/site-packages/tensorflow/contrib/learn/python/learn/datasets/base.py:198: retry (from tensorflow.contrib.learn.python.learn.datasets.base) is deprecated and will be removed in a future version. Instructions for updating: Use the retry module or similar alternatives.
In [5]:
bpnet = BPNetPredictor(model, fasta_file=ds.fasta_file, tasks=tasks)
In [6]:
from tqdm import tqdm
from pybedtools import BedTool, Interval
In [7]:
intervals=list(tqdm(BedTool("2016-11-16-refFlat.TSS-500bp.bed")))
100%|██████████| 34732/34732 [00:00<00:00, 46754.13it/s]
In [8]:
intervals[:5]
Out[8]:
[Interval(chr1:11374-12374), Interval(chr1:16619-17619), Interval(chr1:21524-22524), Interval(chr1:27635-28635), Interval(chr1:28870-29870)]
In [9]:
bpnet.get_seq(intervals[:1])
Out[9]:
array([[[0., 0., 1., 0.],
[0., 0., 0., 1.],
[0., 1., 0., 0.],
...,
[0., 0., 0., 1.],
[0., 1., 0., 0.],
[1., 0., 0., 0.]]], dtype=float32)
In [10]:
len(intervals)
Out[10]:
34732
In [11]:
indices = 11645,11646,11647
intervals = [i for j, i in enumerate(intervals) if j not in indices]
In [12]:
bpnet.plot_predict_grad(intervals=intervals[:4], profile_grad="max")
Out[12]:
[<Figure size 1440x288 with 2 Axes>, <Figure size 1440x288 with 2 Axes>, <Figure size 1440x288 with 2 Axes>, <Figure size 1440x288 with 2 Axes>]
In [13]:
bpnet.export_bw(intervals=intervals,
output_dir=".",
profile_grad='weighted',
batch_size=512,
scale_importance=False,
chromosomes=None)
2018-11-08 14:24:59,200 [INFO] Get model predictions and importance scores 2018-11-08 14:26:13,300 [INFO] Setup bigWigs for writing 2018-11-08 14:26:13,320 [INFO] Writing to bigWigs 0%| | 0/34729 [00:00<?, ?it/s]2018-11-08 14:26:13,342 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:13,343 [ERROR] Skipping the entry: chr1 228105 229105 - PRAMEF8 PRAMEF8 PRAMEF8 2018-11-08 14:26:13,344 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:13,344 [ERROR] Skipping the entry: chr1 228105 229105 - PRAMEF8 PRAMEF8 PRAMEF8 11%|█▏ | 3941/34729 [00:02<00:15, 1946.49it/s]2018-11-08 14:26:15,353 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1003) 2018-11-08 14:26:15,354 [ERROR] Skipping the entry: chr10 58267434 58268434 - IPMK IPMK IPMK 2018-11-08 14:26:15,355 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1003) 2018-11-08 14:26:15,355 [ERROR] Skipping the entry: chr10 58267434 58268434 - IPMK IPMK IPMK 14%|█▎ | 4719/34729 [00:02<00:15, 1940.08it/s]2018-11-08 14:26:15,808 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,808 [ERROR] Skipping the entry: chr11 5772 6772 - LOC338694 LOC338694 LOC338694 2018-11-08 14:26:15,809 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,810 [ERROR] Skipping the entry: chr11 5772 6772 - LOC338694 LOC338694 LOC338694 2018-11-08 14:26:15,811 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,812 [ERROR] Skipping the entry: chr11 17310 18310 - OR5P2 OR5P2 OR5P2 2018-11-08 14:26:15,813 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,814 [ERROR] Skipping the entry: chr11 17310 18310 - OR5P2 OR5P2 OR5P2 2018-11-08 14:26:15,815 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,815 [ERROR] Skipping the entry: chr11 35962 36962 - RNH1 RNH1 RNH1_dup1,RNH1,RNH1_dup2,RNH1_dup3 2018-11-08 14:26:15,816 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,817 [ERROR] Skipping the entry: chr11 35962 36962 - RNH1 RNH1 RNH1_dup1,RNH1,RNH1_dup2,RNH1_dup3 2018-11-08 14:26:15,818 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,818 [ERROR] Skipping the entry: chr11 36424 37424 - RNH1 RNH1 RNH1_dup4,RNH1_dup5,RNH1_dup6,RNH1_dup7 2018-11-08 14:26:15,819 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,820 [ERROR] Skipping the entry: chr11 36424 37424 - RNH1 RNH1 RNH1_dup4,RNH1_dup5,RNH1_dup6,RNH1_dup7 2018-11-08 14:26:15,821 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,822 [ERROR] Skipping the entry: chr11 43434 44434 - OR5T2 OR5T2 OR5T2 2018-11-08 14:26:15,823 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,823 [ERROR] Skipping the entry: chr11 43434 44434 - OR5T2 OR5T2 OR5T2 2018-11-08 14:26:15,825 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,825 [ERROR] Skipping the entry: chr11 46340 47340 - OR5P3 OR5P3 OR5P3 2018-11-08 14:26:15,826 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,827 [ERROR] Skipping the entry: chr11 46340 47340 - OR5P3 OR5P3 OR5P3 2018-11-08 14:26:15,828 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,829 [ERROR] Skipping the entry: chr11 47947 48947 - DUSP8 DUSP8 DUSP8 2018-11-08 14:26:15,830 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,830 [ERROR] Skipping the entry: chr11 47947 48947 - DUSP8 DUSP8 DUSP8 2018-11-08 14:26:15,831 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,832 [ERROR] Skipping the entry: chr11 51513 52513 - MIR675 MIR675 MIR675 2018-11-08 14:26:15,833 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,834 [ERROR] Skipping the entry: chr11 51513 52513 - MIR675 MIR675 MIR675 2018-11-08 14:26:15,835 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,835 [ERROR] Skipping the entry: chr11 52557 53557 - H19 H19 H19,H19_dup1 2018-11-08 14:26:15,836 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,837 [ERROR] Skipping the entry: chr11 52557 53557 - H19 H19 H19,H19_dup1 2018-11-08 14:26:15,838 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,839 [ERROR] Skipping the entry: chr11 56148 57148 - H19 H19 H19_dup2 2018-11-08 14:26:15,840 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:15,840 [ERROR] Skipping the entry: chr11 56148 57148 - H19 H19 H19_dup2 19%|█▉ | 6671/34729 [00:03<00:14, 1915.20it/s]2018-11-08 14:26:16,904 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:16,905 [ERROR] Skipping the entry: chr12 833 1833 - TAS2R7 TAS2R7 TAS2R7 2018-11-08 14:26:16,906 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:16,907 [ERROR] Skipping the entry: chr12 833 1833 - TAS2R7 TAS2R7 TAS2R7 2018-11-08 14:26:16,908 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:16,909 [ERROR] Skipping the entry: chr12 5186 6186 - TAS2R8 TAS2R8 TAS2R8 2018-11-08 14:26:16,910 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:16,910 [ERROR] Skipping the entry: chr12 5186 6186 - TAS2R8 TAS2R8 TAS2R8 2018-11-08 14:26:16,911 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:16,912 [ERROR] Skipping the entry: chr12 8374 9374 - TAS2R9 TAS2R9 TAS2R9 2018-11-08 14:26:16,913 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:16,913 [ERROR] Skipping the entry: chr12 8374 9374 - TAS2R9 TAS2R9 TAS2R9 24%|██▍ | 8401/34729 [00:04<00:13, 1909.91it/s]2018-11-08 14:26:17,815 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,816 [ERROR] Skipping the entry: chr13 24079 25079 - LINC00552 LINC00552 LINC00552 2018-11-08 14:26:17,817 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,818 [ERROR] Skipping the entry: chr13 24079 25079 - LINC00552 LINC00552 LINC00552 2018-11-08 14:26:17,819 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,820 [ERROR] Skipping the entry: chr13 41249 42249 - LINC00417 LINC00417 LINC00417 2018-11-08 14:26:17,820 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,821 [ERROR] Skipping the entry: chr13 41249 42249 - LINC00417 LINC00417 LINC00417 2018-11-08 14:26:17,822 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,823 [ERROR] Skipping the entry: chr13 89618 90618 - LOC101928730 LOC101928730 LOC101928730 2018-11-08 14:26:17,824 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,824 [ERROR] Skipping the entry: chr13 89618 90618 - LOC101928730 LOC101928730 LOC101928730 2018-11-08 14:26:17,825 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,826 [ERROR] Skipping the entry: chr13 131695 132695 - LINC01044 LINC01044 LINC01044 2018-11-08 14:26:17,827 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,827 [ERROR] Skipping the entry: chr13 131695 132695 - LINC01044 LINC01044 LINC01044 2018-11-08 14:26:17,829 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,829 [ERROR] Skipping the entry: chr13 173117 174117 - ANKRD20A9P ANKRD20A9P ANKRD20A9P 2018-11-08 14:26:17,830 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,831 [ERROR] Skipping the entry: chr13 173117 174117 - ANKRD20A9P ANKRD20A9P ANKRD20A9P 2018-11-08 14:26:17,832 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,833 [ERROR] Skipping the entry: chr13 305187 306187 - TUBGCP3 TUBGCP3 TUBGCP3,TUBGCP3_dup1 2018-11-08 14:26:17,833 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:17,834 [ERROR] Skipping the entry: chr13 305187 306187 - TUBGCP3 TUBGCP3 TUBGCP3,TUBGCP3_dup1 26%|██▋ | 9147/34729 [00:04<00:13, 1896.27it/s]2018-11-08 14:26:18,233 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,234 [ERROR] Skipping the entry: chr14 21544 22544 - LOC101929002 LOC101929002 LOC101929002 2018-11-08 14:26:18,235 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,236 [ERROR] Skipping the entry: chr14 21544 22544 - LOC101929002 LOC101929002 LOC101929002 2018-11-08 14:26:18,237 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,238 [ERROR] Skipping the entry: chr14 140076 141076 - ELK2AP ELK2AP ELK2AP 2018-11-08 14:26:18,238 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,239 [ERROR] Skipping the entry: chr14 140076 141076 - ELK2AP ELK2AP ELK2AP 2018-11-08 14:26:18,240 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,241 [ERROR] Skipping the entry: chr14 162083 163083 - TMEM179 TMEM179 TMEM179_dup1,TMEM179 2018-11-08 14:26:18,242 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,242 [ERROR] Skipping the entry: chr14 162083 163083 - TMEM179 TMEM179 TMEM179_dup1,TMEM179 2018-11-08 14:26:18,243 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,244 [ERROR] Skipping the entry: chr14 199381 200381 - CATSPERB CATSPERB CATSPERB 2018-11-08 14:26:18,245 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,245 [ERROR] Skipping the entry: chr14 199381 200381 - CATSPERB CATSPERB CATSPERB 2018-11-08 14:26:18,247 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,247 [ERROR] Skipping the entry: chr14 229981 230981 - ITPK1 ITPK1 ITPK1,ITPK1_dup2,ITPK1_dup1 2018-11-08 14:26:18,248 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,249 [ERROR] Skipping the entry: chr14 229981 230981 - ITPK1 ITPK1 ITPK1,ITPK1_dup2,ITPK1_dup1 2018-11-08 14:26:18,250 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,250 [ERROR] Skipping the entry: chr14 281121 282121 - TC2N TC2N TC2N 2018-11-08 14:26:18,251 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,252 [ERROR] Skipping the entry: chr14 281121 282121 - TC2N TC2N TC2N 2018-11-08 14:26:18,253 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,253 [ERROR] Skipping the entry: chr14 298966 299966 - MOAP1 MOAP1 MOAP1 2018-11-08 14:26:18,254 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,255 [ERROR] Skipping the entry: chr14 298966 299966 - MOAP1 MOAP1 MOAP1 2018-11-08 14:26:18,256 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,256 [ERROR] Skipping the entry: chr14 303821 304821 - TC2N TC2N TC2N_dup2,TC2N_dup3,TC2N_dup1 2018-11-08 14:26:18,257 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,258 [ERROR] Skipping the entry: chr14 303821 304821 - TC2N TC2N TC2N_dup2,TC2N_dup3,TC2N_dup1 2018-11-08 14:26:18,259 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,260 [ERROR] Skipping the entry: chr14 321176 322176 - GON7 GON7 GON7 2018-11-08 14:26:18,260 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,261 [ERROR] Skipping the entry: chr14 321176 322176 - GON7 GON7 GON7 2018-11-08 14:26:18,262 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,262 [ERROR] Skipping the entry: chr14 324841 325841 - MIR4539 MIR4539 MIR4539 2018-11-08 14:26:18,263 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,264 [ERROR] Skipping the entry: chr14 324841 325841 - MIR4539 MIR4539 MIR4539 2018-11-08 14:26:18,265 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,265 [ERROR] Skipping the entry: chr14 325444 326444 - MIR4507 MIR4507 MIR4507 2018-11-08 14:26:18,266 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,267 [ERROR] Skipping the entry: chr14 325444 326444 - MIR4507 MIR4507 MIR4507 2018-11-08 14:26:18,268 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,268 [ERROR] Skipping the entry: chr14 325511 326511 - MIR4538 MIR4538 MIR4538 2018-11-08 14:26:18,269 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,269 [ERROR] Skipping the entry: chr14 325511 326511 - MIR4538 MIR4538 MIR4538 2018-11-08 14:26:18,270 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,271 [ERROR] Skipping the entry: chr14 326380 327380 - MIR4537 MIR4537 MIR4537 2018-11-08 14:26:18,271 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,272 [ERROR] Skipping the entry: chr14 326380 327380 - MIR4537 MIR4537 MIR4537 2018-11-08 14:26:18,273 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,273 [ERROR] Skipping the entry: chr14 326822 327822 - MIR4537 MIR4537 MIR4537_dup1 2018-11-08 14:26:18,274 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,275 [ERROR] Skipping the entry: chr14 326822 327822 - MIR4537 MIR4537 MIR4537_dup1 2018-11-08 14:26:18,276 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,276 [ERROR] Skipping the entry: chr14 439538 440538 - ADAM6 ADAM6 ADAM6 2018-11-08 14:26:18,277 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,278 [ERROR] Skipping the entry: chr14 439538 440538 - ADAM6 ADAM6 ADAM6 2018-11-08 14:26:18,279 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,279 [ERROR] Skipping the entry: chr14 447154 448154 - BTBD7 BTBD7 BTBD7_dup1,BTBD7,BTBD7_dup2 2018-11-08 14:26:18,280 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,280 [ERROR] Skipping the entry: chr14 447154 448154 - BTBD7 BTBD7 BTBD7_dup1,BTBD7,BTBD7_dup2 2018-11-08 14:26:18,282 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,282 [ERROR] Skipping the entry: chr14 902482 903482 - PRIMA1 PRIMA1 PRIMA1 2018-11-08 14:26:18,283 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,283 [ERROR] Skipping the entry: chr14 902482 903482 - PRIMA1 PRIMA1 PRIMA1 2018-11-08 14:26:18,284 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,285 [ERROR] Skipping the entry: chr14 1021127 1022127 - RNU6-8,RNU6-7,RNU6-1 RNU6-8,RNU6-7,RNU6-1 RNU6-8_dup1,RNU6-7_dup1,RNU6-1_dup1 2018-11-08 14:26:18,286 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,286 [ERROR] Skipping the entry: chr14 1021127 1022127 - RNU6-8,RNU6-7,RNU6-1 RNU6-8,RNU6-7,RNU6-1 RNU6-8_dup1,RNU6-7_dup1,RNU6-1_dup1 2018-11-08 14:26:18,287 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,288 [ERROR] Skipping the entry: chr14 1021128 1022128 - RNU6-9,RNU6-2 RNU6-9,RNU6-2 RNU6-2_dup1,RNU6-9_dup1 2018-11-08 14:26:18,288 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,289 [ERROR] Skipping the entry: chr14 1021128 1022128 - RNU6-9,RNU6-2 RNU6-9,RNU6-2 RNU6-2_dup1,RNU6-9_dup1 2018-11-08 14:26:18,290 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,290 [ERROR] Skipping the entry: chr14 1040434 1041434 - FAM181A-AS1 FAM181A-AS1 FAM181A-AS1 2018-11-08 14:26:18,291 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,291 [ERROR] Skipping the entry: chr14 1040434 1041434 - FAM181A-AS1 FAM181A-AS1 FAM181A-AS1 27%|██▋ | 9331/34729 [00:04<00:13, 1877.55it/s]2018-11-08 14:26:18,293 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,293 [ERROR] Skipping the entry: chr14 1062364 1063364 - MIR4506 MIR4506 MIR4506 2018-11-08 14:26:18,294 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,295 [ERROR] Skipping the entry: chr14 1062364 1063364 - MIR4506 MIR4506 MIR4506 2018-11-08 14:26:18,296 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,296 [ERROR] Skipping the entry: chr14 1071483 1072483 - ASB2 ASB2 ASB2 2018-11-08 14:26:18,297 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,297 [ERROR] Skipping the entry: chr14 1071483 1072483 - ASB2 ASB2 ASB2 2018-11-08 14:26:18,298 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,299 [ERROR] Skipping the entry: chr14 1090792 1091792 - ASB2 ASB2 ASB2_dup1 2018-11-08 14:26:18,300 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,300 [ERROR] Skipping the entry: chr14 1090792 1091792 - ASB2 ASB2 ASB2_dup1 2018-11-08 14:26:18,301 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,302 [ERROR] Skipping the entry: chr14 1195274 1196274 - DDX24 DDX24 DDX24 2018-11-08 14:26:18,302 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,303 [ERROR] Skipping the entry: chr14 1195274 1196274 - DDX24 DDX24 DDX24 2018-11-08 14:26:18,304 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,304 [ERROR] Skipping the entry: chr14 1243682 1244682 - IFI27L2 IFI27L2 IFI27L2 2018-11-08 14:26:18,305 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,305 [ERROR] Skipping the entry: chr14 1243682 1244682 - IFI27L2 IFI27L2 IFI27L2 2018-11-08 14:26:18,307 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,307 [ERROR] Skipping the entry: chr14 1341673 1342673 - MIR5195 MIR5195 MIR5195 2018-11-08 14:26:18,308 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,308 [ERROR] Skipping the entry: chr14 1341673 1342673 - MIR5195 MIR5195 MIR5195 2018-11-08 14:26:18,309 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,310 [ERROR] Skipping the entry: chr14 1407086 1408086 - SERPINA10 SERPINA10 SERPINA10 2018-11-08 14:26:18,311 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,311 [ERROR] Skipping the entry: chr14 1407086 1408086 - SERPINA10 SERPINA10 SERPINA10 2018-11-08 14:26:18,312 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,313 [ERROR] Skipping the entry: chr14 1407333 1408333 - SERPINA10 SERPINA10 SERPINA10_dup1 2018-11-08 14:26:18,313 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,314 [ERROR] Skipping the entry: chr14 1407333 1408333 - SERPINA10 SERPINA10 SERPINA10_dup1 2018-11-08 14:26:18,315 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,315 [ERROR] Skipping the entry: chr14 1437413 1438413 - SERPINA6 SERPINA6 SERPINA6 2018-11-08 14:26:18,316 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,316 [ERROR] Skipping the entry: chr14 1437413 1438413 - SERPINA6 SERPINA6 SERPINA6 2018-11-08 14:26:18,318 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,318 [ERROR] Skipping the entry: chr14 1482789 1483789 - SERPINA2 SERPINA2 SERPINA2,SERPINA2_dup1 2018-11-08 14:26:18,319 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,319 [ERROR] Skipping the entry: chr14 1482789 1483789 - SERPINA2 SERPINA2 SERPINA2,SERPINA2_dup1 2018-11-08 14:26:18,320 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,321 [ERROR] Skipping the entry: chr14 1504888 1505888 - SERPINA1 SERPINA1 SERPINA1_dup4 2018-11-08 14:26:18,321 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,322 [ERROR] Skipping the entry: chr14 1504888 1505888 - SERPINA1 SERPINA1 SERPINA1_dup4 2018-11-08 14:26:18,323 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,323 [ERROR] Skipping the entry: chr14 1506764 1507764 - SERPINA1 SERPINA1 SERPINA1,SERPINA1_dup10,SERPINA1_dup8,SERPINA1_dup9,SERPINA1_dup1,SERPINA1_dup2,SERPINA1_dup3,SERPINA1_dup5,SERPINA1_dup6,SERPINA1_dup7 2018-11-08 14:26:18,327 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,327 [ERROR] Skipping the entry: chr14 1506764 1507764 - SERPINA1 SERPINA1 SERPINA1,SERPINA1_dup10,SERPINA1_dup8,SERPINA1_dup9,SERPINA1_dup1,SERPINA1_dup2,SERPINA1_dup3,SERPINA1_dup5,SERPINA1_dup6,SERPINA1_dup7 2018-11-08 14:26:18,341 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,342 [ERROR] Skipping the entry: chr14 15815397 15816397 - BMS1P18,BMS1P17 BMS1P18,BMS1P17 BMS1P17,BMS1P18 2018-11-08 14:26:18,346 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,347 [ERROR] Skipping the entry: chr14 15815397 15816397 - BMS1P18,BMS1P17 BMS1P18,BMS1P17 BMS1P17,BMS1P18 2018-11-08 14:26:18,351 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,352 [ERROR] Skipping the entry: chr14 15820384 15821384 - BMS1P22 BMS1P22 BMS1P22 2018-11-08 14:26:18,354 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:18,355 [ERROR] Skipping the entry: chr14 15820384 15821384 - BMS1P22 BMS1P22 BMS1P22 30%|██▉ | 10268/34729 [00:05<00:13, 1798.68it/s]2018-11-08 14:26:19,121 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,122 [ERROR] Skipping the entry: chr15 13853 14853 - CYFIP1 CYFIP1 CYFIP1_dup9 2018-11-08 14:26:19,123 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,124 [ERROR] Skipping the entry: chr15 13853 14853 - CYFIP1 CYFIP1 CYFIP1_dup9 2018-11-08 14:26:19,125 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,126 [ERROR] Skipping the entry: chr15 55222 56222 - LOC646214 LOC646214 LOC646214 2018-11-08 14:26:19,127 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,127 [ERROR] Skipping the entry: chr15 55222 56222 - LOC646214 LOC646214 LOC646214 2018-11-08 14:26:19,128 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,129 [ERROR] Skipping the entry: chr15 59052 60052 - GOLGA6L10 GOLGA6L10 GOLGA6L10 2018-11-08 14:26:19,130 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,130 [ERROR] Skipping the entry: chr15 59052 60052 - GOLGA6L10 GOLGA6L10 GOLGA6L10 30%|███ | 10422/34729 [00:05<00:13, 1793.98it/s]2018-11-08 14:26:19,133 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,133 [ERROR] Skipping the entry: chr15 76936 77936 - CYFIP1 CYFIP1 CYFIP1_dup3,CYFIP1_dup2,CYFIP1_dup7,CYFIP1_dup6,CYFIP1_dup5,CYFIP1_dup4,CYFIP1_dup8 2018-11-08 14:26:19,134 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,135 [ERROR] Skipping the entry: chr15 76936 77936 - CYFIP1 CYFIP1 CYFIP1_dup3,CYFIP1_dup2,CYFIP1_dup7,CYFIP1_dup6,CYFIP1_dup5,CYFIP1_dup4,CYFIP1_dup8 2018-11-08 14:26:19,136 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,136 [ERROR] Skipping the entry: chr15 77344 78344 - CYFIP1 CYFIP1 CYFIP1 2018-11-08 14:26:19,137 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,138 [ERROR] Skipping the entry: chr15 77344 78344 - CYFIP1 CYFIP1 CYFIP1 2018-11-08 14:26:19,139 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,139 [ERROR] Skipping the entry: chr15 77393 78393 - CYFIP1 CYFIP1 CYFIP1_dup1 2018-11-08 14:26:19,140 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,141 [ERROR] Skipping the entry: chr15 77393 78393 - CYFIP1 CYFIP1 CYFIP1_dup1 2018-11-08 14:26:19,142 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,142 [ERROR] Skipping the entry: chr15 96113 97113 - LOC727751 LOC727751 LOC727751,LOC727751_dup1 2018-11-08 14:26:19,143 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,144 [ERROR] Skipping the entry: chr15 96113 97113 - LOC727751 LOC727751 LOC727751,LOC727751_dup1 2018-11-08 14:26:19,144 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,145 [ERROR] Skipping the entry: chr15 96118 97118 - GOLGA2P10 GOLGA2P10 GOLGA2P10_dup1,GOLGA2P10,GOLGA2P10_dup2 2018-11-08 14:26:19,146 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,146 [ERROR] Skipping the entry: chr15 96118 97118 - GOLGA2P10 GOLGA2P10 GOLGA2P10_dup1,GOLGA2P10,GOLGA2P10_dup2 2018-11-08 14:26:19,148 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,148 [ERROR] Skipping the entry: chr15 105810 106810 - GOLGA6L22 GOLGA6L22 GOLGA6L22 2018-11-08 14:26:19,149 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,150 [ERROR] Skipping the entry: chr15 105810 106810 - GOLGA6L22 GOLGA6L22 GOLGA6L22 2018-11-08 14:26:19,150 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,151 [ERROR] Skipping the entry: chr15 105832 106832 - GOLGA6L1 GOLGA6L1 GOLGA6L1 2018-11-08 14:26:19,152 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,152 [ERROR] Skipping the entry: chr15 105832 106832 - GOLGA6L1 GOLGA6L1 GOLGA6L1 2018-11-08 14:26:19,153 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,154 [ERROR] Skipping the entry: chr15 124297 125297 - LOC102724034 LOC102724034 LOC102724034 2018-11-08 14:26:19,155 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,155 [ERROR] Skipping the entry: chr15 124297 125297 - LOC102724034 LOC102724034 LOC102724034 2018-11-08 14:26:19,157 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,157 [ERROR] Skipping the entry: chr15 131473 132473 - CXADRP2 CXADRP2 CXADRP2 2018-11-08 14:26:19,158 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,158 [ERROR] Skipping the entry: chr15 131473 132473 - CXADRP2 CXADRP2 CXADRP2 2018-11-08 14:26:19,160 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,160 [ERROR] Skipping the entry: chr15 136194 137194 - TUBGCP5 TUBGCP5 TUBGCP5,TUBGCP5_dup1 2018-11-08 14:26:19,161 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,162 [ERROR] Skipping the entry: chr15 136194 137194 - TUBGCP5 TUBGCP5 TUBGCP5,TUBGCP5_dup1 2018-11-08 14:26:19,163 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,163 [ERROR] Skipping the entry: chr15 138053 139053 - GOLGA6L10 GOLGA6L10 GOLGA6L10_dup1 2018-11-08 14:26:19,164 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,165 [ERROR] Skipping the entry: chr15 138053 139053 - GOLGA6L10 GOLGA6L10 GOLGA6L10_dup1 2018-11-08 14:26:19,166 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,166 [ERROR] Skipping the entry: chr15 139724 140724 - GOLGA8EP GOLGA8EP GOLGA8EP 2018-11-08 14:26:19,167 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,168 [ERROR] Skipping the entry: chr15 139724 140724 - GOLGA8EP GOLGA8EP GOLGA8EP 2018-11-08 14:26:19,169 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,169 [ERROR] Skipping the entry: chr15 197822 198822 - POTEB3 POTEB3 POTEB3_dup1,POTEB3 2018-11-08 14:26:19,170 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,171 [ERROR] Skipping the entry: chr15 197822 198822 - POTEB3 POTEB3 POTEB3_dup1,POTEB3 2018-11-08 14:26:19,172 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,173 [ERROR] Skipping the entry: chr15 233111 234111 - OCA2 OCA2 OCA2_dup1,OCA2 2018-11-08 14:26:19,173 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,174 [ERROR] Skipping the entry: chr15 233111 234111 - OCA2 OCA2 OCA2_dup1,OCA2 2018-11-08 14:26:19,175 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,176 [ERROR] Skipping the entry: chr15 260374 261374 - NF1P2 NF1P2 NF1P2 2018-11-08 14:26:19,176 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,177 [ERROR] Skipping the entry: chr15 260374 261374 - NF1P2 NF1P2 NF1P2 2018-11-08 14:26:19,178 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,178 [ERROR] Skipping the entry: chr15 329063 330063 - RPS17 RPS17 RPS17 2018-11-08 14:26:19,179 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,180 [ERROR] Skipping the entry: chr15 329063 330063 - RPS17 RPS17 RPS17 2018-11-08 14:26:19,180 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,181 [ERROR] Skipping the entry: chr15 329150 330150 - RPS17 RPS17 RPS17_dup2,RPS17_dup1 2018-11-08 14:26:19,182 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,182 [ERROR] Skipping the entry: chr15 329150 330150 - RPS17 RPS17 RPS17_dup2,RPS17_dup1 2018-11-08 14:26:19,183 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,184 [ERROR] Skipping the entry: chr15 357192 358192 - MEGF11 MEGF11 MEGF11 2018-11-08 14:26:19,184 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,185 [ERROR] Skipping the entry: chr15 357192 358192 - MEGF11 MEGF11 MEGF11 2018-11-08 14:26:19,186 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,187 [ERROR] Skipping the entry: chr15 360428 361428 - CPEB1 CPEB1 CPEB1,CPEB1_dup3,CPEB1_dup2,CPEB1_dup1 2018-11-08 14:26:19,187 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,188 [ERROR] Skipping the entry: chr15 360428 361428 - CPEB1 CPEB1 CPEB1,CPEB1_dup3,CPEB1_dup2,CPEB1_dup1 2018-11-08 14:26:19,189 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,190 [ERROR] Skipping the entry: chr15 415974 416974 - CPEB1 CPEB1 CPEB1_dup4 2018-11-08 14:26:19,190 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,191 [ERROR] Skipping the entry: chr15 415974 416974 - CPEB1 CPEB1 CPEB1_dup4 2018-11-08 14:26:19,191 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,192 [ERROR] Skipping the entry: chr15 415975 416975 - CPEB1 CPEB1 CPEB1_dup5 2018-11-08 14:26:19,193 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,193 [ERROR] Skipping the entry: chr15 415975 416975 - CPEB1 CPEB1 CPEB1_dup5 2018-11-08 14:26:19,194 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,195 [ERROR] Skipping the entry: chr15 808292 809292 - GOLGA8F,GOLGA8G GOLGA8F,GOLGA8G GOLGA8G_dup1,GOLGA8F_dup1 2018-11-08 14:26:19,196 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,196 [ERROR] Skipping the entry: chr15 808292 809292 - GOLGA8F,GOLGA8G GOLGA8F,GOLGA8G GOLGA8G_dup1,GOLGA8F_dup1 2018-11-08 14:26:19,197 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,198 [ERROR] Skipping the entry: chr15 987709 988709 - GOLGA8M,GOLGA8IP GOLGA8M,GOLGA8IP GOLGA8M,GOLGA8IP 2018-11-08 14:26:19,198 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,199 [ERROR] Skipping the entry: chr15 987709 988709 - GOLGA8M,GOLGA8IP GOLGA8M,GOLGA8IP GOLGA8M,GOLGA8IP 2018-11-08 14:26:19,200 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,200 [ERROR] Skipping the entry: chr15 1051273 1052273 - WHAMMP1 WHAMMP1 WHAMMP1 2018-11-08 14:26:19,201 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,202 [ERROR] Skipping the entry: chr15 1051273 1052273 - WHAMMP1 WHAMMP1 WHAMMP1 2018-11-08 14:26:19,203 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,203 [ERROR] Skipping the entry: chr15 1544867 1545867 - NSMCE3 NSMCE3 NSMCE3 2018-11-08 14:26:19,204 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,205 [ERROR] Skipping the entry: chr15 1544867 1545867 - NSMCE3 NSMCE3 NSMCE3 2018-11-08 14:26:19,206 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,206 [ERROR] Skipping the entry: chr15 1854404 1855404 - FAM189A1 FAM189A1 FAM189A1 2018-11-08 14:26:19,207 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,207 [ERROR] Skipping the entry: chr15 1854404 1855404 - FAM189A1 FAM189A1 FAM189A1 2018-11-08 14:26:19,208 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,209 [ERROR] Skipping the entry: chr15 2105166 2106166 - TJP1 TJP1 TJP1 2018-11-08 14:26:19,210 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,210 [ERROR] Skipping the entry: chr15 2105166 2106166 - TJP1 TJP1 TJP1 2018-11-08 14:26:19,211 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,211 [ERROR] Skipping the entry: chr15 2106121 2107121 - TJP1 TJP1 TJP1_dup2,TJP1_dup3,TJP1_dup4 2018-11-08 14:26:19,212 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,212 [ERROR] Skipping the entry: chr15 2106121 2107121 - TJP1 TJP1 TJP1_dup2,TJP1_dup3,TJP1_dup4 2018-11-08 14:26:19,213 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,214 [ERROR] Skipping the entry: chr15 2253464 2254464 - TJP1 TJP1 TJP1_dup1 2018-11-08 14:26:19,215 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,215 [ERROR] Skipping the entry: chr15 2253464 2254464 - TJP1 TJP1 TJP1_dup1 2018-11-08 14:26:19,216 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,217 [ERROR] Skipping the entry: chr15 2381405 2382405 - GOLGA8J GOLGA8J GOLGA8J 2018-11-08 14:26:19,217 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,218 [ERROR] Skipping the entry: chr15 2381405 2382405 - GOLGA8J GOLGA8J GOLGA8J 2018-11-08 14:26:19,219 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,219 [ERROR] Skipping the entry: chr15 2678039 2679039 - CHRFAM7A CHRFAM7A CHRFAM7A_dup1,CHRFAM7A 2018-11-08 14:26:19,220 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,221 [ERROR] Skipping the entry: chr15 2678039 2679039 - CHRFAM7A CHRFAM7A CHRFAM7A_dup1,CHRFAM7A 2018-11-08 14:26:19,222 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,223 [ERROR] Skipping the entry: chr15 2698650 2699650 - GOLGA8R GOLGA8R GOLGA8R 2018-11-08 14:26:19,224 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,224 [ERROR] Skipping the entry: chr15 2698650 2699650 - GOLGA8R GOLGA8R GOLGA8R 2018-11-08 14:26:19,235 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,243 [ERROR] Skipping the entry: chr15 2850161 2851161 - GOLGA8O GOLGA8O GOLGA8O 2018-11-08 14:26:19,244 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,244 [ERROR] Skipping the entry: chr15 2850161 2851161 - GOLGA8O GOLGA8O GOLGA8O 2018-11-08 14:26:19,248 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,249 [ERROR] Skipping the entry: chr15 2902203 2903203 - GOLGA8K GOLGA8K GOLGA8K 2018-11-08 14:26:19,250 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,250 [ERROR] Skipping the entry: chr15 2902203 2903203 - GOLGA8K GOLGA8K GOLGA8K 2018-11-08 14:26:19,254 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,255 [ERROR] Skipping the entry: chr15 2902267 2903267 - GOLGA8H GOLGA8H GOLGA8H_dup1 2018-11-08 14:26:19,255 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,256 [ERROR] Skipping the entry: chr15 2902267 2903267 - GOLGA8H GOLGA8H GOLGA8H_dup1 2018-11-08 14:26:19,258 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,258 [ERROR] Skipping the entry: chr15 3276856 3277856 - MTMR10 MTMR10 MTMR10 2018-11-08 14:26:19,259 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,259 [ERROR] Skipping the entry: chr15 3276856 3277856 - MTMR10 MTMR10 MTMR10 2018-11-08 14:26:19,273 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,273 [ERROR] Skipping the entry: chr15 3350411 3351411 - MIR211 MIR211 MIR211 2018-11-08 14:26:19,274 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,274 [ERROR] Skipping the entry: chr15 3350411 3351411 - MIR211 MIR211 MIR211 2018-11-08 14:26:19,276 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,277 [ERROR] Skipping the entry: chr15 3386962 3387962 - TRPM1 TRPM1 TRPM1_dup3,TRPM1,TRPM1_dup1 2018-11-08 14:26:19,278 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,278 [ERROR] Skipping the entry: chr15 3386962 3387962 - TRPM1 TRPM1 TRPM1_dup3,TRPM1,TRPM1_dup1 2018-11-08 14:26:19,279 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,280 [ERROR] Skipping the entry: chr15 3446537 3447537 - TRPM1 TRPM1 TRPM1_dup2 2018-11-08 14:26:19,281 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,281 [ERROR] Skipping the entry: chr15 3446537 3447537 - TRPM1 TRPM1 TRPM1_dup2 2018-11-08 14:26:19,283 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,283 [ERROR] Skipping the entry: chr15 3516130 3517130 - LOC283710 LOC283710 LOC283710 2018-11-08 14:26:19,284 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,285 [ERROR] Skipping the entry: chr15 3516130 3517130 - LOC283710 LOC283710 LOC283710 2018-11-08 14:26:19,287 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,287 [ERROR] Skipping the entry: chr15 3974129 3975129 - LOC100288637 LOC100288637 LOC100288637_dup3 2018-11-08 14:26:19,288 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,289 [ERROR] Skipping the entry: chr15 3974129 3975129 - LOC100288637 LOC100288637 LOC100288637_dup3 2018-11-08 14:26:19,290 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,291 [ERROR] Skipping the entry: chr15 4155311 4156311 - OTUD7A OTUD7A OTUD7A,OTUD7A_dup1 2018-11-08 14:26:19,292 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,292 [ERROR] Skipping the entry: chr15 4155311 4156311 - OTUD7A OTUD7A OTUD7A,OTUD7A_dup1 2018-11-08 14:26:19,294 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,294 [ERROR] Skipping the entry: chr15 4819682 4820682 - GOLGA8T GOLGA8T GOLGA8T_dup1 2018-11-08 14:26:19,295 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,296 [ERROR] Skipping the entry: chr15 4819682 4820682 - GOLGA8T GOLGA8T GOLGA8T_dup1 2018-11-08 14:26:19,297 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,297 [ERROR] Skipping the entry: chr15 4887147 4888147 - LOC105370757 LOC105370757 LOC105370757 2018-11-08 14:26:19,298 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,298 [ERROR] Skipping the entry: chr15 4887147 4888147 - LOC105370757 LOC105370757 LOC105370757 2018-11-08 14:26:19,300 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,301 [ERROR] Skipping the entry: chr15 4932959 4933959 - LOC100131315 LOC100131315 LOC100131315 2018-11-08 14:26:19,302 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,302 [ERROR] Skipping the entry: chr15 4932959 4933959 - LOC100131315 LOC100131315 LOC100131315 2018-11-08 14:26:19,304 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,304 [ERROR] Skipping the entry: chr15 5140248 5141248 - FMN1 FMN1 FMN1,FMN1_dup1 2018-11-08 14:26:19,305 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:19,306 [ERROR] Skipping the entry: chr15 5140248 5141248 - FMN1 FMN1 FMN1,FMN1_dup1 38%|███▊ | 13089/34729 [00:07<00:12, 1775.05it/s]2018-11-08 14:26:20,698 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,699 [ERROR] Skipping the entry: chr17 4784 5784 - KRTAP29-1 KRTAP29-1 KRTAP29-1 2018-11-08 14:26:20,700 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,700 [ERROR] Skipping the entry: chr17 4784 5784 - KRTAP29-1 KRTAP29-1 KRTAP29-1 2018-11-08 14:26:20,701 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,702 [ERROR] Skipping the entry: chr17 11879 12879 - KRT37 KRT37 KRT37 2018-11-08 14:26:20,703 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,703 [ERROR] Skipping the entry: chr17 11879 12879 - KRT37 KRT37 KRT37 2018-11-08 14:26:20,704 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,705 [ERROR] Skipping the entry: chr17 15978 16978 - KRT12 KRT12 KRT12 2018-11-08 14:26:20,706 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,706 [ERROR] Skipping the entry: chr17 15978 16978 - KRT12 KRT12 KRT12 2018-11-08 14:26:20,708 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,708 [ERROR] Skipping the entry: chr17 29739 30739 - MMP28 MMP28 MMP28,MMP28_dup1,MMP28_dup2,MMP28_dup3 2018-11-08 14:26:20,709 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,709 [ERROR] Skipping the entry: chr17 29739 30739 - MMP28 MMP28 MMP28,MMP28_dup1,MMP28_dup2,MMP28_dup3 2018-11-08 14:26:20,711 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,711 [ERROR] Skipping the entry: chr17 30912 31912 - KRTAP9-7 KRTAP9-7 KRTAP9-7 2018-11-08 14:26:20,712 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,713 [ERROR] Skipping the entry: chr17 30912 31912 - KRTAP9-7 KRTAP9-7 KRTAP9-7 2018-11-08 14:26:20,714 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,714 [ERROR] Skipping the entry: chr17 34011 35011 - KRT20 KRT20 KRT20 2018-11-08 14:26:20,715 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,716 [ERROR] Skipping the entry: chr17 34011 35011 - KRT20 KRT20 KRT20 2018-11-08 14:26:20,717 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,717 [ERROR] Skipping the entry: chr17 34562 35562 - SLC43A2 SLC43A2 SLC43A2_dup1 2018-11-08 14:26:20,718 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,718 [ERROR] Skipping the entry: chr17 34562 35562 - SLC43A2 SLC43A2 SLC43A2_dup1 2018-11-08 14:26:20,720 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,720 [ERROR] Skipping the entry: chr17 37613 38613 - KRT33A KRT33A KRT33A 2018-11-08 14:26:20,721 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,721 [ERROR] Skipping the entry: chr17 37613 38613 - KRT33A KRT33A KRT33A 2018-11-08 14:26:20,722 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,723 [ERROR] Skipping the entry: chr17 38736 39736 - KRT31 KRT31 KRT31 2018-11-08 14:26:20,724 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,724 [ERROR] Skipping the entry: chr17 38736 39736 - KRT31 KRT31 KRT31 2018-11-08 14:26:20,725 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,726 [ERROR] Skipping the entry: chr17 43729 44729 - CCL3L3 CCL3L3 CCL3L3 2018-11-08 14:26:20,727 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,727 [ERROR] Skipping the entry: chr17 43729 44729 - CCL3L3 CCL3L3 CCL3L3 2018-11-08 14:26:20,728 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,728 [ERROR] Skipping the entry: chr17 43740 44740 - CCL3L1 CCL3L1 CCL3L1 2018-11-08 14:26:20,729 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,730 [ERROR] Skipping the entry: chr17 43740 44740 - CCL3L1 CCL3L1 CCL3L1 2018-11-08 14:26:20,730 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,731 [ERROR] Skipping the entry: chr17 43757 44757 - CCL3 CCL3 CCL3 2018-11-08 14:26:20,732 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,732 [ERROR] Skipping the entry: chr17 43757 44757 - CCL3 CCL3 CCL3 2018-11-08 14:26:20,733 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,734 [ERROR] Skipping the entry: chr17 54789 55789 - KRT34 KRT34 KRT34 2018-11-08 14:26:20,735 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,735 [ERROR] Skipping the entry: chr17 54789 55789 - KRT34 KRT34 KRT34 2018-11-08 14:26:20,736 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,737 [ERROR] Skipping the entry: chr17 57903 58903 - SLC43A2 SLC43A2 SLC43A2_dup4,SLC43A2_dup2 2018-11-08 14:26:20,738 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,738 [ERROR] Skipping the entry: chr17 57903 58903 - SLC43A2 SLC43A2 SLC43A2_dup4,SLC43A2_dup2 2018-11-08 14:26:20,739 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,739 [ERROR] Skipping the entry: chr17 58414 59414 - SLC43A2 SLC43A2 SLC43A2,SLC43A2_dup3 2018-11-08 14:26:20,758 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:20,759 [ERROR] Skipping the entry: chr17 58414 59414 - SLC43A2 SLC43A2 SLC43A2,SLC43A2_dup3 44%|████▍ | 15427/34729 [00:08<00:10, 1779.06it/s]2018-11-08 14:26:22,078 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,079 [ERROR] Skipping the entry: chr19 8194 9194 - CEACAM7 CEACAM7 CEACAM7_dup1,CEACAM7 2018-11-08 14:26:22,080 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,081 [ERROR] Skipping the entry: chr19 8194 9194 - CEACAM7 CEACAM7 CEACAM7_dup1,CEACAM7 2018-11-08 14:26:22,082 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,083 [ERROR] Skipping the entry: chr19 24360 25360 - SBNO2 SBNO2 SBNO2 2018-11-08 14:26:22,084 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,085 [ERROR] Skipping the entry: chr19 24360 25360 - SBNO2 SBNO2 SBNO2 2018-11-08 14:26:22,086 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,086 [ERROR] Skipping the entry: chr19 37820 38820 - VSTM1 VSTM1 VSTM1,VSTM1_dup4,VSTM1_dup3,VSTM1_dup2,VSTM1_dup1 2018-11-08 14:26:22,087 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,088 [ERROR] Skipping the entry: chr19 37820 38820 - VSTM1 VSTM1 VSTM1,VSTM1_dup4,VSTM1_dup3,VSTM1_dup2,VSTM1_dup1 2018-11-08 14:26:22,089 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,090 [ERROR] Skipping the entry: chr19 48334 49334 - SBNO2 SBNO2 SBNO2_dup1 2018-11-08 14:26:22,091 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,091 [ERROR] Skipping the entry: chr19 48334 49334 - SBNO2 SBNO2 SBNO2_dup1 2018-11-08 14:26:22,093 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,093 [ERROR] Skipping the entry: chr19 50426 51426 - TARM1 TARM1 TARM1 2018-11-08 14:26:22,094 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,095 [ERROR] Skipping the entry: chr19 50426 51426 - TARM1 TARM1 TARM1 2018-11-08 14:26:22,096 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,097 [ERROR] Skipping the entry: chr19 55247 56247 - TARM1 TARM1 TARM1_dup1 2018-11-08 14:26:22,097 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:22,098 [ERROR] Skipping the entry: chr19 55247 56247 - TARM1 TARM1 TARM1_dup1 2018-11-08 14:26:22,099 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1090) 2018-11-08 14:26:22,100 [ERROR] Skipping the entry: chr19 59970 60970 - MED16 MED16 MED16 2018-11-08 14:26:22,101 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1090) 2018-11-08 14:26:22,101 [ERROR] Skipping the entry: chr19 59970 60970 - MED16 MED16 MED16 51%|█████ | 17594/34729 [00:09<00:09, 1790.44it/s]2018-11-08 14:26:23,223 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:23,223 [ERROR] Skipping the entry: chr2 8067 9067 - LOC100288911 LOC100288911 LOC100288911 2018-11-08 14:26:23,224 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:23,225 [ERROR] Skipping the entry: chr2 8067 9067 - LOC100288911 LOC100288911 LOC100288911 57%|█████▋ | 19938/34729 [00:11<00:08, 1805.46it/s]2018-11-08 14:26:24,413 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,414 [ERROR] Skipping the entry: chr20 11277 12277 - NPBWR2 NPBWR2 NPBWR2 2018-11-08 14:26:24,415 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,415 [ERROR] Skipping the entry: chr20 11277 12277 - NPBWR2 NPBWR2 NPBWR2 2018-11-08 14:26:24,417 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,417 [ERROR] Skipping the entry: chr20 32739 33739 - KCNQ2 KCNQ2 KCNQ2 2018-11-08 14:26:24,418 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,419 [ERROR] Skipping the entry: chr20 32739 33739 - KCNQ2 KCNQ2 KCNQ2 2018-11-08 14:26:24,420 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1321) 2018-11-08 14:26:24,420 [ERROR] Skipping the entry: chr20 63733 64733 - MIR1257 MIR1257 MIR1257 2018-11-08 14:26:24,421 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1321) 2018-11-08 14:26:24,422 [ERROR] Skipping the entry: chr20 63733 64733 - MIR1257 MIR1257 MIR1257 60%|██████ | 20901/34729 [00:11<00:07, 1807.19it/s]2018-11-08 14:26:24,922 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,923 [ERROR] Skipping the entry: chr21 8756 9756 - BTG3 BTG3 BTG3,BTG3_dup1 2018-11-08 14:26:24,924 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,925 [ERROR] Skipping the entry: chr21 8756 9756 - BTG3 BTG3 BTG3,BTG3_dup1 2018-11-08 14:26:24,926 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,927 [ERROR] Skipping the entry: chr21 14126 15126 - FTCD FTCD FTCD_dup2,FTCD_dup1,FTCD 2018-11-08 14:26:24,928 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,928 [ERROR] Skipping the entry: chr21 14126 15126 - FTCD FTCD FTCD_dup2,FTCD_dup1,FTCD 2018-11-08 14:26:24,929 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,930 [ERROR] Skipping the entry: chr21 44150 45150 - C21orf62 C21orf62 C21orf62_dup1,C21orf62_dup2,C21orf62 2018-11-08 14:26:24,931 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,932 [ERROR] Skipping the entry: chr21 44150 45150 - C21orf62 C21orf62 C21orf62_dup1,C21orf62_dup2,C21orf62 2018-11-08 14:26:24,933 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,933 [ERROR] Skipping the entry: chr21 45329 46329 - SPATC1L SPATC1L SPATC1L_dup1,SPATC1L 2018-11-08 14:26:24,934 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,935 [ERROR] Skipping the entry: chr21 45329 46329 - SPATC1L SPATC1L SPATC1L_dup1,SPATC1L 2018-11-08 14:26:24,936 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,937 [ERROR] Skipping the entry: chr21 80444 81444 - LSS LSS LSS_dup1,LSS,LSS_dup2,LSS_dup3 2018-11-08 14:26:24,938 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,938 [ERROR] Skipping the entry: chr21 80444 81444 - LSS LSS LSS_dup1,LSS,LSS_dup2,LSS_dup3 2018-11-08 14:26:24,939 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,940 [ERROR] Skipping the entry: chr21 83638 84638 - TMEM50B TMEM50B TMEM50B_dup1,TMEM50B 2018-11-08 14:26:24,941 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,941 [ERROR] Skipping the entry: chr21 83638 84638 - TMEM50B TMEM50B TMEM50B_dup1,TMEM50B 2018-11-08 14:26:24,942 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,943 [ERROR] Skipping the entry: chr21 95113 96113 - DNAJC28 DNAJC28 DNAJC28_dup1 2018-11-08 14:26:24,944 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,944 [ERROR] Skipping the entry: chr21 95113 96113 - DNAJC28 DNAJC28 DNAJC28_dup1 2018-11-08 14:26:24,945 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,946 [ERROR] Skipping the entry: chr21 95353 96353 - DNAJC28 DNAJC28 DNAJC28_dup2,DNAJC28 2018-11-08 14:26:24,947 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,947 [ERROR] Skipping the entry: chr21 95353 96353 - DNAJC28 DNAJC28 DNAJC28_dup2,DNAJC28 2018-11-08 14:26:24,948 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,949 [ERROR] Skipping the entry: chr21 104317 105317 - MIR3118-1 MIR3118-1 MIR3118-1 2018-11-08 14:26:24,950 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,950 [ERROR] Skipping the entry: chr21 104317 105317 - MIR3118-1 MIR3118-1 MIR3118-1 2018-11-08 14:26:24,951 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,952 [ERROR] Skipping the entry: chr21 115090 116090 - GART GART GART,GART_dup1,GART_dup2 2018-11-08 14:26:24,953 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:24,953 [ERROR] Skipping the entry: chr21 115090 116090 - GART GART GART,GART_dup1,GART_dup2 2018-11-08 14:26:24,996 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1315) 2018-11-08 14:26:24,997 [ERROR] Skipping the entry: chr21 8986499 8987499 + MIR3648-1,MIR3648-2 MIR3648-1,MIR3648-2 MIR3648-2_dup1,MIR3648-1_dup1 2018-11-08 14:26:24,998 [ERROR] interval.stop - interval.start (1000)!= len(arr) (1315) 2018-11-08 14:26:24,998 [ERROR] Skipping the entry: chr21 8986499 8987499 + MIR3648-1,MIR3648-2 MIR3648-1,MIR3648-2 MIR3648-2_dup1,MIR3648-1_dup1 62%|██████▏ | 21471/34729 [00:11<00:07, 1802.40it/s]2018-11-08 14:26:25,244 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,245 [ERROR] Skipping the entry: chr22 3834 4834 - CHCHD10 CHCHD10 CHCHD10,CHCHD10_dup3,CHCHD10_dup2,CHCHD10_dup1 2018-11-08 14:26:25,245 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,246 [ERROR] Skipping the entry: chr22 3834 4834 - CHCHD10 CHCHD10 CHCHD10,CHCHD10_dup3,CHCHD10_dup2,CHCHD10_dup1 2018-11-08 14:26:25,247 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,248 [ERROR] Skipping the entry: chr22 12800 13800 - NDUFA6 NDUFA6 NDUFA6 2018-11-08 14:26:25,249 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,249 [ERROR] Skipping the entry: chr22 12800 13800 - NDUFA6 NDUFA6 NDUFA6 2018-11-08 14:26:25,251 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,251 [ERROR] Skipping the entry: chr22 27584 28584 - CES5AP1 CES5AP1 CES5AP1 2018-11-08 14:26:25,252 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,253 [ERROR] Skipping the entry: chr22 27584 28584 - CES5AP1 CES5AP1 CES5AP1 2018-11-08 14:26:25,254 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,254 [ERROR] Skipping the entry: chr22 37322 38322 - PVALB PVALB PVALB 2018-11-08 14:26:25,255 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,256 [ERROR] Skipping the entry: chr22 37322 38322 - PVALB PVALB PVALB 2018-11-08 14:26:25,257 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,257 [ERROR] Skipping the entry: chr22 39760 40760 - PVALB PVALB PVALB_dup1 2018-11-08 14:26:25,258 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,259 [ERROR] Skipping the entry: chr22 39760 40760 - PVALB PVALB PVALB_dup1 2018-11-08 14:26:25,260 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,260 [ERROR] Skipping the entry: chr22 48070 49070 - ZDHHC8P1 ZDHHC8P1 ZDHHC8P1 2018-11-08 14:26:25,261 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,262 [ERROR] Skipping the entry: chr22 48070 49070 - ZDHHC8P1 ZDHHC8P1 ZDHHC8P1 2018-11-08 14:26:25,263 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,264 [ERROR] Skipping the entry: chr22 52722 53722 - LOC101929829,CYP2D6 LOC101929829,CYP2D6 LOC101929829,CYP2D6_dup1,CYP2D6 2018-11-08 14:26:25,264 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,265 [ERROR] Skipping the entry: chr22 52722 53722 - LOC101929829,CYP2D6 LOC101929829,CYP2D6 LOC101929829,CYP2D6_dup1,CYP2D6 2018-11-08 14:26:25,266 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,267 [ERROR] Skipping the entry: chr22 66394 67394 - LOC101929829,CYP2D6 LOC101929829,CYP2D6 LOC101929829_dup1,CYP2D6_dup2 2018-11-08 14:26:25,267 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,268 [ERROR] Skipping the entry: chr22 66394 67394 - LOC101929829,CYP2D6 LOC101929829,CYP2D6 LOC101929829_dup1,CYP2D6_dup2 2018-11-08 14:26:25,269 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,269 [ERROR] Skipping the entry: chr22 66415 67415 - CYP2D7 CYP2D7 CYP2D7 2018-11-08 14:26:25,270 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,271 [ERROR] Skipping the entry: chr22 66415 67415 - CYP2D7 CYP2D7 CYP2D7 2018-11-08 14:26:25,272 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,272 [ERROR] Skipping the entry: chr22 74874 75874 - DERL3 DERL3 DERL3,DERL3_dup2,DERL3_dup1 2018-11-08 14:26:25,273 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,274 [ERROR] Skipping the entry: chr22 74874 75874 - DERL3 DERL3 DERL3,DERL3_dup2,DERL3_dup1 2018-11-08 14:26:25,275 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,275 [ERROR] Skipping the entry: chr22 83488 84488 - APOBEC3B-AS1 APOBEC3B-AS1 APOBEC3B-AS1 2018-11-08 14:26:25,276 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,277 [ERROR] Skipping the entry: chr22 83488 84488 - APOBEC3B-AS1 APOBEC3B-AS1 APOBEC3B-AS1 2018-11-08 14:26:25,278 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,278 [ERROR] Skipping the entry: chr22 86423 87423 - GGT3P GGT3P GGT3P 2018-11-08 14:26:25,279 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,280 [ERROR] Skipping the entry: chr22 86423 87423 - GGT3P GGT3P GGT3P 2018-11-08 14:26:25,281 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,281 [ERROR] Skipping the entry: chr22 132439 133439 - LOC388882 LOC388882 LOC388882 2018-11-08 14:26:25,282 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,282 [ERROR] Skipping the entry: chr22 132439 133439 - LOC388882 LOC388882 LOC388882 2018-11-08 14:26:25,284 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,284 [ERROR] Skipping the entry: chr22 134792 135792 - MIF-AS1 MIF-AS1 MIF-AS1 2018-11-08 14:26:25,285 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,285 [ERROR] Skipping the entry: chr22 134792 135792 - MIF-AS1 MIF-AS1 MIF-AS1 2018-11-08 14:26:25,286 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,287 [ERROR] Skipping the entry: chr22 137186 138186 - TCF20 TCF20 TCF20 2018-11-08 14:26:25,288 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,288 [ERROR] Skipping the entry: chr22 137186 138186 - TCF20 TCF20 TCF20 2018-11-08 14:26:25,289 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,290 [ERROR] Skipping the entry: chr22 137188 138188 - TCF20 TCF20 TCF20_dup1 2018-11-08 14:26:25,290 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,291 [ERROR] Skipping the entry: chr22 137188 138188 - TCF20 TCF20 TCF20_dup1 2018-11-08 14:26:25,292 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,292 [ERROR] Skipping the entry: chr22 144344 145344 - ZNF280B ZNF280B ZNF280B,ZNF280B_dup2,ZNF280B_dup1 2018-11-08 14:26:25,293 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,294 [ERROR] Skipping the entry: chr22 144344 145344 - ZNF280B ZNF280B ZNF280B,ZNF280B_dup2,ZNF280B_dup1 2018-11-08 14:26:25,295 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,295 [ERROR] Skipping the entry: chr22 155438 156438 - ZNF280A ZNF280A ZNF280A 2018-11-08 14:26:25,296 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,296 [ERROR] Skipping the entry: chr22 155438 156438 - ZNF280A ZNF280A ZNF280A 2018-11-08 14:26:25,298 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,298 [ERROR] Skipping the entry: chr22 161081 162081 - RBFOX2 RBFOX2 RBFOX2_dup4,RBFOX2_dup5,RBFOX2,RBFOX2_dup3 2018-11-08 14:26:25,299 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,299 [ERROR] Skipping the entry: chr22 161081 162081 - RBFOX2 RBFOX2 RBFOX2_dup4,RBFOX2_dup5,RBFOX2,RBFOX2_dup3 2018-11-08 14:26:25,300 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,301 [ERROR] Skipping the entry: chr22 161250 162250 - PRODH PRODH PRODH 2018-11-08 14:26:25,301 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,302 [ERROR] Skipping the entry: chr22 161250 162250 - PRODH PRODH PRODH 2018-11-08 14:26:25,303 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,303 [ERROR] Skipping the entry: chr22 161352 162352 - PRODH PRODH PRODH_dup1 2018-11-08 14:26:25,304 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,305 [ERROR] Skipping the entry: chr22 161352 162352 - PRODH PRODH PRODH_dup1 2018-11-08 14:26:25,306 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,306 [ERROR] Skipping the entry: chr22 189339 190339 - PRAME PRAME PRAME 2018-11-08 14:26:25,307 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,307 [ERROR] Skipping the entry: chr22 189339 190339 - PRAME PRAME PRAME 2018-11-08 14:26:25,308 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,309 [ERROR] Skipping the entry: chr22 191083 192083 - PRAME PRAME PRAME_dup1 2018-11-08 14:26:25,310 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,310 [ERROR] Skipping the entry: chr22 191083 192083 - PRAME PRAME PRAME_dup1 2018-11-08 14:26:25,311 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,312 [ERROR] Skipping the entry: chr22 192911 193911 - PRAME PRAME PRAME_dup3,PRAME_dup2,PRAME_dup4 2018-11-08 14:26:25,313 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,313 [ERROR] Skipping the entry: chr22 192911 193911 - PRAME PRAME PRAME_dup3,PRAME_dup2,PRAME_dup4 2018-11-08 14:26:25,314 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,315 [ERROR] Skipping the entry: chr22 194518 195518 - PRAME PRAME PRAME_dup10,PRAME_dup7,PRAME_dup6,PRAME_dup5,PRAME_dup9,PRAME_dup8 2018-11-08 14:26:25,315 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,316 [ERROR] Skipping the entry: chr22 194518 195518 - PRAME PRAME PRAME_dup10,PRAME_dup7,PRAME_dup6,PRAME_dup5,PRAME_dup9,PRAME_dup8 2018-11-08 14:26:25,317 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,318 [ERROR] Skipping the entry: chr22 197043 198043 - GSTT2B GSTT2B GSTT2B 2018-11-08 14:26:25,318 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,319 [ERROR] Skipping the entry: chr22 197043 198043 - GSTT2B GSTT2B GSTT2B 2018-11-08 14:26:25,320 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,320 [ERROR] Skipping the entry: chr22 197163 198163 - GSTT2 GSTT2 GSTT2_dup1,GSTT2_dup2,GSTT2 2018-11-08 14:26:25,321 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,321 [ERROR] Skipping the entry: chr22 197163 198163 - GSTT2 GSTT2 GSTT2_dup1,GSTT2_dup2,GSTT2 2018-11-08 14:26:25,322 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,323 [ERROR] Skipping the entry: chr22 215694 216694 - DDT DDT DDT_dup1 2018-11-08 14:26:25,323 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,324 [ERROR] Skipping the entry: chr22 215694 216694 - DDT DDT DDT_dup1 2018-11-08 14:26:25,325 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,325 [ERROR] Skipping the entry: chr22 240933 241933 - GSTTP1 GSTTP1 GSTTP1 2018-11-08 14:26:25,326 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,327 [ERROR] Skipping the entry: chr22 240933 241933 - GSTTP1 GSTTP1 GSTTP1 2018-11-08 14:26:25,328 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,328 [ERROR] Skipping the entry: chr22 259397 260397 - RBFOX2 RBFOX2 RBFOX2_dup1,RBFOX2_dup2 2018-11-08 14:26:25,329 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,329 [ERROR] Skipping the entry: chr22 259397 260397 - RBFOX2 RBFOX2 RBFOX2_dup1,RBFOX2_dup2 2018-11-08 14:26:25,330 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,331 [ERROR] Skipping the entry: chr22 267461 268461 - DDT DDT DDT_dup2 2018-11-08 14:26:25,332 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,332 [ERROR] Skipping the entry: chr22 267461 268461 - DDT DDT DDT_dup2 2018-11-08 14:26:25,333 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,334 [ERROR] Skipping the entry: chr22 295574 296574 - GSTTP2 GSTTP2 GSTTP2 2018-11-08 14:26:25,334 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,335 [ERROR] Skipping the entry: chr22 295574 296574 - GSTTP2 GSTTP2 GSTTP2 64%|██████▍ | 22188/34729 [00:12<00:07, 1786.57it/s]2018-11-08 14:26:25,780 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,781 [ERROR] Skipping the entry: chr3 5875 6875 - DHX36 DHX36 DHX36_dup1,DHX36 2018-11-08 14:26:25,782 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:25,783 [ERROR] Skipping the entry: chr3 5875 6875 - DHX36 DHX36 DHX36_dup1,DHX36 78%|███████▊ | 27063/34729 [00:15<00:04, 1797.54it/s]2018-11-08 14:26:28,387 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:28,388 [ERROR] Skipping the entry: chr6 17347 18347 - DLL1 DLL1 DLL1 2018-11-08 14:26:28,389 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:28,390 [ERROR] Skipping the entry: chr6 17347 18347 - DLL1 DLL1 DLL1 2018-11-08 14:26:28,391 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:28,392 [ERROR] Skipping the entry: chr6 26285 27285 - TCTE3 TCTE3 TCTE3,TCTE3_dup1 2018-11-08 14:26:28,392 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:28,393 [ERROR] Skipping the entry: chr6 26285 27285 - TCTE3 TCTE3 TCTE3,TCTE3_dup1 87%|████████▋ | 30374/34729 [00:16<00:02, 1809.70it/s]2018-11-08 14:26:30,153 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,154 [ERROR] Skipping the entry: chr8 8178 9178 - LOC100133669 LOC100133669 LOC100133669 2018-11-08 14:26:30,154 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,155 [ERROR] Skipping the entry: chr8 8178 9178 - LOC100133669 LOC100133669 LOC100133669 2018-11-08 14:26:30,156 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,157 [ERROR] Skipping the entry: chr8 9457 10457 - LINC00824 LINC00824 LINC00824 2018-11-08 14:26:30,157 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,158 [ERROR] Skipping the entry: chr8 9457 10457 - LINC00824 LINC00824 LINC00824 2018-11-08 14:26:30,159 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,160 [ERROR] Skipping the entry: chr8 21323 22323 - LOC286083 LOC286083 LOC286083 2018-11-08 14:26:30,160 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,161 [ERROR] Skipping the entry: chr8 21323 22323 - LOC286083 LOC286083 LOC286083 2018-11-08 14:26:30,162 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,163 [ERROR] Skipping the entry: chr8 22181 23181 - MIR1302-7 MIR1302-7 MIR1302-7 2018-11-08 14:26:30,163 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,164 [ERROR] Skipping the entry: chr8 22181 23181 - MIR1302-7 MIR1302-7 MIR1302-7 2018-11-08 14:26:30,165 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,166 [ERROR] Skipping the entry: chr8 30990 31990 - ZC3H3 ZC3H3 ZC3H3 2018-11-08 14:26:30,166 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,167 [ERROR] Skipping the entry: chr8 30990 31990 - ZC3H3 ZC3H3 ZC3H3 2018-11-08 14:26:30,168 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,168 [ERROR] Skipping the entry: chr8 33319 34319 - GPR20 GPR20 GPR20 2018-11-08 14:26:30,169 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,170 [ERROR] Skipping the entry: chr8 33319 34319 - GPR20 GPR20 GPR20 2018-11-08 14:26:30,171 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,171 [ERROR] Skipping the entry: chr8 34550 35550 - DLGAP2-AS1 DLGAP2-AS1 DLGAP2-AS1 2018-11-08 14:26:30,172 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,173 [ERROR] Skipping the entry: chr8 34550 35550 - DLGAP2-AS1 DLGAP2-AS1 DLGAP2-AS1 2018-11-08 14:26:30,174 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,174 [ERROR] Skipping the entry: chr8 39136 40136 - FAM66B FAM66B FAM66B 2018-11-08 14:26:30,175 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,176 [ERROR] Skipping the entry: chr8 39136 40136 - FAM66B FAM66B FAM66B 2018-11-08 14:26:30,177 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,177 [ERROR] Skipping the entry: chr8 46748 47748 - ZNF705G ZNF705G ZNF705G 2018-11-08 14:26:30,178 [ERROR] interval.stop - interval.start (1000)!= len(arr) (4000) 2018-11-08 14:26:30,178 [ERROR] Skipping the entry: chr8 46748 47748 - ZNF705G ZNF705G ZNF705G 100%|██████████| 34729/34729 [00:19<00:00, 1815.59it/s] 2018-11-08 14:26:32,451 [INFO] Done writing. Closing bigWigs 2018-11-08 14:27:16,553 [INFO] Done! Files located at: .
In [14]:
print("Done")
Done
In [15]:
print("Done")
Done