In [1]:
from basepair.imports import *

Using TensorFlow backend.

2018-12-11 22:51:30,596 [WARNING] git-lfs not installed
In [2]:
modisco_dir = "/users/amr1/bpnet/basepair/src/cage/modisco/"
mr = ModiscoResult(modisco_dir+"modisco.h5")
mr.open()
In [3]:
len(mr.patterns())
Out[3]:
2
In [4]:
grad_modisco_dir = "/users/amr1/bpnet/basepair/src/cage/grad_modisco/"
grad_mr = ModiscoResult(modisco_dir+"modisco.h5")
grad_mr.open()
In [5]:
len(grad_mr.patterns())
Out[5]:
2
In [7]:
from modisco.visualization import viz_sequence
import matplotlib.pyplot as plt
%matplotlib inline

print("DeepLIFT Modisco Patterns")
for pattern_name in mr.patterns():
    viz_sequence.plot_weights(mr.get_pattern(pattern_name).seq, figsize=(20,3))

DeepLIFT Modisco Patterns
In [8]:
print("gradxinp Modisco Patterns")
for pattern_name in grad_mr.patterns():
    viz_sequence.plot_weights(grad_mr.get_pattern(pattern_name).seq, figsize=(20,3))

gradxinp Modisco Patterns