2018-09-20 08:10:03 INFO  /home/ktian/kundajelab/tfnet/scripts/prepare_data_pf.py --tfs SP1 --test-only True --bg-stride=50
2018-09-20 08:10:32 DEBUG /home/ktian/kundajelab/tfnet/scripts/label_regions  --positives /home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR334KIQ-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-SP1-human-ENCSR000BHK-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HEK293T-SP1-human-ENCSR906PEI-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR000BJX-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR085IXF-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/K562-SP1-human-ENCSR991ELG-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/A549-SP1-human-ENCSR000BPE-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR386YIH-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-SP1-human-ENCSR000BIR-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/MCF-7-SP1-human-ENCSR729LGA-optimal_idr.narrowPeak.gz --ambiguous ./_tmp_wYN2ke/_tmp_HepG2-SP1-human-ENCSR334KIQ-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_empty_file,./_tmp_wYN2ke/_tmp_HEK293T-SP1-human-ENCSR906PEI-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_HepG2-SP1-human-ENCSR000BJX-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_liver-SP1-human-ENCSR085IXF-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_K562-SP1-human-ENCSR991ELG-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_A549-SP1-human-ENCSR000BPE-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_liver-SP1-human-ENCSR386YIH-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_H1-hESC-SP1-human-ENCSR000BIR-merged.narrowPeak.gz,./_tmp_wYN2ke/_tmp_MCF-7-SP1-human-ENCSR729LGA-merged.narrowPeak.gz --genome hg19 --prefix label  --stride 10 --bg-stride 50  --background /home/ktian/kundajelab/tfnet/genome/hg19.tsv  --test-only True 
2018-09-20 08:10:32 DEBUG bin-size=200, stride=10
2018-09-20 08:10:50 DEBUG in: skip_test=1 bin-size=200, stride=10
2018-09-20 08:10:50 DEBUG in: skip_test=0 bin-size=200, stride=50
2018-09-20 08:11:27 INFO  LABEL_REGIONS sort merge done
2018-09-20 08:13:26 INFO  LABEL_REGIONS intersect done
2018-09-20 08:14:48 INFO  LABEL_REGIONS labels done
2018-09-20 08:14:51 INFO  LABEL_REGIONS ALL DONE *****
2018-09-20 08:15:08 INFO  prepare_data done
/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR334KIQ-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-SP1-human-ENCSR000BHK-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/HEK293T-SP1-human-ENCSR906PEI-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR000BJX-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR085IXF-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/K562-SP1-human-ENCSR991ELG-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/A549-SP1-human-ENCSR000BPE-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR386YIH-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-SP1-human-ENCSR000BIR-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/MCF-7-SP1-human-ENCSR729LGA-optimal_idr.narrowPeak.gz
10
Using TensorFlow backend.
WARNING:tensorflow:From /home/ktian/anaconda3/envs/modisco_dev/lib/python2.7/site-packages/tensorflow/python/util/deprecation.py:497: calling conv1d (from tensorflow.python.ops.nn_ops) with data_format=NHWC is deprecated and will be removed in a future version.
Instructions for updating:
`NHWC` for data_format is deprecated, use `NWC` instead
2018-09-20 08:15:09.901939: I tensorflow/core/platform/cpu_feature_guard.cc:140] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 FMA
2018-09-20 08:15:10.209810: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1344] Found device 0 with properties: 
name: GeForce GTX TITAN X major: 5 minor: 2 memoryClockRate(GHz): 1.076
pciBusID: 0000:08:00.0
totalMemory: 11.93GiB freeMemory: 11.79GiB
2018-09-20 08:15:10.209883: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1423] Adding visible gpu devices: 0
2018-09-20 08:15:10.558090: I tensorflow/core/common_runtime/gpu/gpu_device.cc:911] Device interconnect StreamExecutor with strength 1 edge matrix:
2018-09-20 08:15:10.558123: I tensorflow/core/common_runtime/gpu/gpu_device.cc:917]      0 
2018-09-20 08:15:10.558129: I tensorflow/core/common_runtime/gpu/gpu_device.cc:930] 0:   N 
2018-09-20 08:15:10.558443: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1041] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 11420 MB memory) -> physical GPU (device: 0, name: GeForce GTX TITAN X, pci bus id: 0000:08:00.0, compute capability: 5.2)
Loading momma_dragonn.data_loaders.pyfasta_data_loader.SingleStreamSeqOnly
Reading bed file splits/valid.tsv.gz into memory
Finished reading bed file into memory; got 4863768rows
using pyfasta