2018-09-20 04:31:27 INFO  /home/ktian/kundajelab/tfnet/scripts/prepare_data_pf.py --tfs SP1 --stride 10 --hdf5 True
2018-09-20 04:31:56 DEBUG /home/ktian/kundajelab/tfnet/scripts/label_regions  --positives /home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR334KIQ-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-SP1-human-ENCSR000BHK-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HEK293T-SP1-human-ENCSR906PEI-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR000BJX-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR085IXF-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/K562-SP1-human-ENCSR991ELG-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/A549-SP1-human-ENCSR000BPE-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR386YIH-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-SP1-human-ENCSR000BIR-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/MCF-7-SP1-human-ENCSR729LGA-optimal_idr.narrowPeak.gz --ambiguous ./_tmp_ZTff3g/_tmp_HepG2-SP1-human-ENCSR334KIQ-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_empty_file,./_tmp_ZTff3g/_tmp_HEK293T-SP1-human-ENCSR906PEI-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_HepG2-SP1-human-ENCSR000BJX-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_liver-SP1-human-ENCSR085IXF-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_K562-SP1-human-ENCSR991ELG-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_A549-SP1-human-ENCSR000BPE-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_liver-SP1-human-ENCSR386YIH-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_H1-hESC-SP1-human-ENCSR000BIR-merged.narrowPeak.gz,./_tmp_ZTff3g/_tmp_MCF-7-SP1-human-ENCSR729LGA-merged.narrowPeak.gz --genome hg19 --prefix label  --stride 10 --background /home/ktian/kundajelab/tfnet/genome/hg19.tsv 
2018-09-20 04:31:56 DEBUG bin-size=200, stride=10
2018-09-20 04:32:14 DEBUG in: skip_test=1 bin-size=200, stride=10
2018-09-20 04:32:17 DEBUG in: skip_test=0 bin-size=200, stride=1000
2018-09-20 04:32:41 INFO  LABEL_REGIONS sort merge done
2018-09-20 04:34:04 INFO  LABEL_REGIONS intersect done
2018-09-20 04:34:57 INFO  LABEL_REGIONS labels done
2018-09-20 04:35:00 INFO  LABEL_REGIONS ALL DONE *****
2018-09-20 04:36:11 INFO  split and make hdf5
Reading in labels
on file inputs.fa
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2018-09-20 06:04:02 INFO  prepare_data done
/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR334KIQ-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-SP1-human-ENCSR000BHK-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/HEK293T-SP1-human-ENCSR906PEI-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-SP1-human-ENCSR000BJX-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR085IXF-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/K562-SP1-human-ENCSR991ELG-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/A549-SP1-human-ENCSR000BPE-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/liver-SP1-human-ENCSR386YIH-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-SP1-human-ENCSR000BIR-optimal_idr.narrowPeak.gz
/home/ktian/kundajelab/tfnet/ENCODE_data/MCF-7-SP1-human-ENCSR729LGA-optimal_idr.narrowPeak.gz
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