2018-09-03 23:25:08 INFO /home/ktian/kundajelab/tfnet/scripts/prepare_data_pf.py --tfs JUND --test-only True --bg-stride=50 2018-09-03 23:25:50 DEBUG /home/ktian/kundajelab/tfnet/scripts/label_regions --positives /home/ktian/kundajelab/tfnet/ENCODE_data/K562-JUND-human-ENCSR000EGN-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/SK-N-SH-JUND-human-ENCSR000EIB-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/A549-JUND-human-ENCSR000BRF-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-JUND-human-ENCSR000EYV-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/T47D-JUND-human-ENCSR000BVO-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/liver-JUND-human-ENCSR837GTK-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-JUND-human-ENCSR000EBZ-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-JUND-human-ENCSR000EEI-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/liver-JUND-human-ENCSR196HGZ-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/SK-N-SH-JUND-human-ENCSR000BSK-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-JUND-human-ENCSR000DYS-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HeLa-S3-JUND-human-ENCSR000EDH-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HCT116-JUND-human-ENCSR000BSA-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-JUND-human-ENCSR000BGK-optimal_idr.narrowPeak.gz,/home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-JUND-human-ENCSR000BKP-optimal_idr.narrowPeak.gz --ambiguous ./_tmp_NEWF7L/_tmp_K562-JUND-human-ENCSR000EGN-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_SK-N-SH-JUND-human-ENCSR000EIB-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_A549-JUND-human-ENCSR000BRF-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_empty_file,./_tmp_NEWF7L/_tmp_T47D-JUND-human-ENCSR000BVO-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_liver-JUND-human-ENCSR837GTK-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_H1-hESC-JUND-human-ENCSR000EBZ-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_HepG2-JUND-human-ENCSR000EEI-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_liver-JUND-human-ENCSR196HGZ-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_SK-N-SH-JUND-human-ENCSR000BSK-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_GM12878-JUND-human-ENCSR000DYS-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_empty_file,./_tmp_NEWF7L/_tmp_HCT116-JUND-human-ENCSR000BSA-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_HepG2-JUND-human-ENCSR000BGK-merged.narrowPeak.gz,./_tmp_NEWF7L/_tmp_H1-hESC-JUND-human-ENCSR000BKP-merged.narrowPeak.gz --genome hg19 --prefix label --stride 10 --bg-stride 50 --background /home/ktian/kundajelab/tfnet/genome/hg19.tsv --test-only True 2018-09-03 23:25:50 DEBUG bin-size=200, stride=10 2018-09-03 23:26:17 DEBUG in: skip_test=1 bin-size=200, stride=10 2018-09-03 23:26:17 DEBUG in: skip_test=0 bin-size=200, stride=50 2018-09-03 23:26:54 INFO LABEL_REGIONS sort merge done 2018-09-03 23:29:46 INFO LABEL_REGIONS intersect done 2018-09-03 23:31:48 INFO LABEL_REGIONS labels done 2018-09-03 23:31:52 INFO LABEL_REGIONS ALL DONE ***** 2018-09-03 23:32:09 INFO prepare_data done /home/ktian/kundajelab/tfnet/ENCODE_data/K562-JUND-human-ENCSR000EGN-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/SK-N-SH-JUND-human-ENCSR000EIB-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/A549-JUND-human-ENCSR000BRF-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-JUND-human-ENCSR000EYV-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/T47D-JUND-human-ENCSR000BVO-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/liver-JUND-human-ENCSR837GTK-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-JUND-human-ENCSR000EBZ-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-JUND-human-ENCSR000EEI-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/liver-JUND-human-ENCSR196HGZ-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/SK-N-SH-JUND-human-ENCSR000BSK-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/GM12878-JUND-human-ENCSR000DYS-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/HeLa-S3-JUND-human-ENCSR000EDH-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/HCT116-JUND-human-ENCSR000BSA-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/HepG2-JUND-human-ENCSR000BGK-optimal_idr.narrowPeak.gz /home/ktian/kundajelab/tfnet/ENCODE_data/H1-hESC-JUND-human-ENCSR000BKP-optimal_idr.narrowPeak.gz 15 Using TensorFlow backend. WARNING:tensorflow:From /home/ktian/anaconda3/envs/modisco_dev/lib/python2.7/site-packages/tensorflow/python/util/deprecation.py:497: calling conv1d (from tensorflow.python.ops.nn_ops) with data_format=NHWC is deprecated and will be removed in a future version. Instructions for updating: `NHWC` for data_format is deprecated, use `NWC` instead 2018-09-03 23:32:10.763099: I tensorflow/core/platform/cpu_feature_guard.cc:140] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 FMA 2018-09-03 23:32:11.083003: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1344] Found device 0 with properties: name: GeForce GTX TITAN X major: 5 minor: 2 memoryClockRate(GHz): 1.076 pciBusID: 0000:05:00.0 totalMemory: 11.93GiB freeMemory: 11.79GiB 2018-09-03 23:32:11.083050: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1423] Adding visible gpu devices: 0 2018-09-03 23:32:11.500231: I tensorflow/core/common_runtime/gpu/gpu_device.cc:911] Device interconnect StreamExecutor with strength 1 edge matrix: 2018-09-03 23:32:11.500270: I tensorflow/core/common_runtime/gpu/gpu_device.cc:917] 0 2018-09-03 23:32:11.500278: I tensorflow/core/common_runtime/gpu/gpu_device.cc:930] 0: N 2018-09-03 23:32:11.500633: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1041] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 11420 MB memory) -> physical GPU (device: 0, name: GeForce GTX TITAN X, pci bus id: 0000:05:00.0, compute capability: 5.2) Loading momma_dragonn.data_loaders.pyfasta_data_loader.SingleStreamSeqOnly Reading bed file splits/valid.tsv.gz into memory Finished reading bed file into memory; got 4863768rows using pyfasta done prediction on batch 1000 done prediction on batch 2000 done prediction on batch 3000 done prediction on batch 4000 done prediction on batch 5000 done prediction on batch 6000 done prediction on batch 7000 done prediction on batch 8000 done prediction on batch 9000 done prediction on batch 10000 done prediction on batch 11000 done prediction on batch 12000 done prediction on batch 13000 done prediction on batch 14000 done prediction on batch 15000 done prediction on batch 16000 done prediction on batch 17000 done prediction on batch 18000 done prediction on batch 19000 done prediction on batch 20000 done prediction on batch 21000 done prediction on batch 22000 done prediction on batch 23000 done prediction on batch 24000 done prediction on batch 24318