Index of /kundaje/avanti/tfmodisco_bio_experiments/bpnet/trial1

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]instances.parq/2020-09-24 06:39 -  
[DIR]meme_out/2020-04-16 11:33 -  
[DIR]v0.5.16.0/2021-12-29 03:42 -  
[ ]523a1a82c23711ea9f9157d4c043164e.tree2020-07-09 22:57 0  
[TXT]copy_model.sh2020-05-14 05:43 223  
[TXT]runme.sh2019-11-25 02:09 289  
[TXT]copy_data.py2019-11-25 02:09 449  
[ ]Untitled.ipynb2020-07-09 17:20 555  
[TXT]retained_hits.txt2020-08-13 19:56 805  
[TXT]agkm_fewerseqlets_esrrb_hits.txt2020-08-13 20:09 1.0K 
[TXT]agkm_r2_esrrb_hits.txt2020-08-14 16:01 2.0K 
[TXT]esrrb_2pcseqlets_hits.txt2020-08-14 15:14 2.6K 
[TXT]agkm_50kseqlets_esrrb_hits.txt2020-08-13 19:56 3.9K 
[TXT]tmp_hits.txt2020-08-14 16:03 5.0K 
[ ]TryBpNet_AGKM_embeddings_fewerseqlets-Copy1.ipynb2020-09-17 21:06 39K 
[ ]TryBpNet_v0.5.17.0.ipynb2021-12-04 22:51 44K 
[TXT]agkm_fewerseqlets_allpattern_hits.txt2020-08-13 20:09 55K 
[TXT]agkm_r2_allpattern_hits.txt2020-08-14 16:01 59K 
[TXT]agkm_r2_laststage.txt2020-08-14 16:01 60K 
[TXT]agkm_fewerseqlets_laststage.txt2020-08-13 20:09 72K 
[TXT]agkm_r2_goingin.txt2020-08-14 16:01 75K 
[TXT]agkm_fewerseqlets_goingin.txt2020-08-13 20:09 102K 
[ ]Trying_Advanced_GappedKmerEmbedding.ipynb2020-12-28 10:20 234K 
[TXT]agkm_50kseqlets_laststage.txt2020-08-13 19:56 448K 
[TXT]agkm_50kseqlets_allpattern_hits.txt2020-08-13 19:56 456K 
[ ]embedding_model.h52020-08-06 23:11 514K 
[TXT]agkm_50kseqlets_goingin.txt2020-08-13 19:56 656K 
[ ]LocalNormSeqletIdentification-Copy1.ipynb2020-12-09 17:10 1.0M 
[ ]model.h52020-05-14 05:36 1.7M 
[ ]BpNet-Viz.ipynb2020-06-05 00:06 2.7M 
[ ]TryBpNet_v0.5.14.0_studymergecriteria.ipynb2021-03-08 01:05 2.8M 
[ ]Trying_FullConv_FilterEmbedding.ipynb2020-08-13 17:26 5.2M 
[ ]ReplaceSeqletsWithAggregates.ipynb2020-07-31 12:51 5.4M 
[ ]TryBpNet_v0.5.10.2.ipynb2021-02-10 17:44 5.4M 
[ ]MakeEmbeddingModelAndRunTfModisco_corrthresh-0.1.ipynb2020-05-14 22:02 6.2M 
[ ]VariableLengthSeqletIdentification.ipynb2020-12-22 21:40 6.3M 
[ ]TryBpNet.ipynb2020-08-13 17:14 8.3M 
[ ]TryBpNet_AGKM_embeddings.ipynb2020-09-02 09:18 9.1M 
[ ]TryBpNet-MEMEinit.ipynb2020-04-16 21:51 13M 
[ ]CompareBPNetExemplarHitScoring.ipynb2020-10-01 21:23 13M 
[ ]TryBpNet_AGKM_embeddings_fewerseqlets.ipynb2020-11-11 18:24 15M 
[ ]commit20e04f_corrthresh0_nomemeinit_4layerembedding_results.hdf52020-06-25 19:59 15M 
[ ]nanog_profile_wn_contribs_fewerseqlets.npy2020-11-11 10:35 17M 
[ ]nanog_profile_wn_hypimp_fewerseqlets.npy2020-11-11 10:35 17M 
[ ]onehot_seq_fewerseqlets.npy2020-11-11 10:35 17M 
[ ]MakeEmbeddingModelAndRunTfModisco.ipynb2020-07-09 05:59 18M 
[ ]subset2pc_commitaadf4e_agkm_default_results.hdf52020-08-13 19:59 19M 
[ ]subset2pc_commit5fe538_agkm_default_results.hdf52020-08-20 21:13 19M 
[ ]agkmfewerseqles_withmotifsprereassignment.h52020-09-17 22:10 20M 
[ ]ReplaceSeqletsWithAggregates-Copy1.ipynb2020-07-09 23:55 20M 
[ ]agkmfewerseqles_noclustermerging.h52020-11-11 18:10 21M 
[ ]agkmfewerseqles_newclustermerging.h52020-11-11 10:31 21M 
[ ]TryBpNet_v0.5.14.0 hit scoring test.ipynb2021-04-28 19:56 24M 
[ ]TryBpNet_v0.5.14.0_noontheflyflankfill.ipynb2021-03-03 20:48 24M 
[ ]TryBpNet_v0.5.14.0_ontheflyflankfill.ipynb2021-03-08 00:29 30M 
[ ]ExemplarHitScoringDev.ipynb2020-09-24 18:02 38M 
[ ]TryBpNet_v0.5.12.0_add_in_subclustering_coremotifonly.ipynb2021-02-24 20:19 59M 
[TXT]TryBpNet_v0.5.12.0_add_in_subclustering_coremotifonly.html2021-02-24 20:19 60M 
[ ]TryBpNet_v0.5.12.0_add_in_subclustering.ipynb2021-02-18 19:37 76M 
[TXT]TryBpNet_v0.5.12.0_add_in_subclustering.html2021-02-18 20:02 77M 
[ ]v0.5.17.0_tag.hdf52021-12-05 16:05 81M 
[ ]523a1a82c23711ea9f9157d4c043164e_graph.weights2020-07-09 22:56 100M 
[ ]523a1a82c23711ea9f9157d4c043164e_graph.bin2020-07-09 22:56 100M 
[ ]v0.5.10.0_variablelen.hdf52021-02-04 20:00 155M 
[ ]extracted_contrib_scores.npy2019-12-26 00:01 211M 
[ ]extracted_hypothetical_scores.npy2019-12-26 00:01 211M 
[ ]extracted_onehot.npy2019-12-26 00:01 211M 
[ ]dcfeda32c23611ea9f9157d4c043164e.bin2020-07-09 22:52 270M 
[ ]523a1a82c23711ea9f9157d4c043164e.bin2020-07-09 22:56 400M 
[ ]myrun_results.hdf52019-11-25 19:53 462M 
[ ]commit20e04f_nomemeinit_4layerembedding_results.hdf52020-05-14 08:21 846M 
[ ]presparserun_l8g3m2_results.hdf52019-12-22 05:37 846M 
[ ]modisco.h52020-09-24 07:45 846M 
[ ]trial1.modisco.h52019-11-25 02:08 846M 
[ ]commitb86c5a_l6g2m0_results.hdf52020-04-16 02:16 846M 
[ ]commit20e04f_corrthresh0p1_nomemeinit_4layerembedding_results.hdf52020-05-14 21:46 846M 
[ ]commit0975f52_l6g2m0_results.hdf52020-04-15 23:38 846M 
[ ]presparserun_results.hdf52019-12-21 12:11 846M 
[ ]sparserun_l6g2m0_results.hdf52019-12-25 01:28 846M 
[ ]commit891181_nomemeinit_l6g2m0_results.hdf52020-04-16 12:49 846M 
[ ]gappedkmers_l6g2m0_results.hdf52020-08-06 09:40 846M 
[ ]commit97f7d5b_agkm_default_results.hdf52020-08-07 17:25 848M 
[ ]commit891181_memeinit_l6g2m0_results.hdf52020-04-16 15:00 852M 
[ ]sparserun_results.hdf52019-12-21 09:39 857M 
[ ]v0.5.8.0_agkm_default_results.hdf52021-01-21 05:19 857M 
[ ]v0.5.10.0.hdf52021-01-27 23:14 857M 
[ ]v0.5.10.2_noreducemem.hdf52021-02-12 03:04 857M 
[ ]v0.5.11.0_reducemem.hdf52021-02-10 22:55 857M 
[ ]v0.5.13.0.hdf52021-02-19 07:01 866M 
[ ]v0.5.14.0_tag.hdf52021-04-21 20:35 869M 
[ ]v0.5.14.0_minratherthanavgmerge.hdf52021-03-02 20:17 874M 
[ ]v0.5.14.0_ontheflyflankfill.hdf52021-03-03 17:52 875M 
[ ]v0.5.14.0.hdf52021-02-25 10:47 883M 
[ ]null.deeplift.imp_score.h52020-12-09 17:18 1.4G 
[ ]trial1.deeplift.imp_score.h52019-11-25 02:09 4.4G 
[ ]deeplift.imp_score.h52020-07-31 08:09 42G 
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