Index of /kundaje/atwang/gp_mouse/workflow/scripts

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]alignments_to_bed.py2022-01-20 03:27 1.5K 
[ ]archr_cluster.R2022-03-04 03:55 6.2K 
[ ]archr_cluster_extern.R2022-03-25 02:02 4.1K 
[ ]archr_cluster_extern_merged.R2022-04-07 05:35 4.9K 
[ ]archr_cluster_import_merged.R2022-04-01 00:55 5.7K 
[ ]archr_cluster_integrated.R2022-04-07 03:58 5.1K 
[ ]archr_cluster_l2.R2022-06-02 06:13 3.9K 
[ ]archr_cluster_l3.R2022-06-07 20:21 4.2K 
[ ]archr_export_cellnames.R2022-04-08 19:23 1.1K 
[ ]archr_harmony.R2022-04-01 01:30 3.9K 
[ ]archr_label_export.R2022-07-07 18:24 2.0K 
[ ]archr_label_export_l1.R2022-06-02 18:20 2.1K 
[ ]archr_label_export_l2.R2022-06-06 16:33 2.0K 
[ ]archr_label_export_l3.R2022-06-14 01:26 2.2K 
[ ]archr_label_export_l3_merged.R2022-09-21 22:47 1.1K 
[ ]archr_label_import_l2.R2022-06-14 04:01 2.7K 
[ ]archr_label_import_l3.R2022-06-14 05:08 2.9K 
[ ]archr_label_split_l1.R2022-06-02 17:11 1.3K 
[ ]archr_label_split_l2.R2022-06-04 00:21 1.3K 
[ ]archr_load_rna.R2022-04-06 23:31 3.0K 
[ ]archr_load_rna_merged.R2022-04-06 23:31 4.4K 
[ ]archr_lsi.R2022-03-31 05:34 5.6K 
[ ]archr_markerlist_l2.R2022-06-02 06:13 4.5K 
[ ]archr_markerlist_l3.R2022-06-04 00:21 4.5K 
[ ]archr_markerlist_merged.R2022-07-07 16:52 4.5K 
[ ]archr_markerlist_merged_l3.R2022-06-14 20:36 4.5K 
[ ]archr_markers.R2022-03-10 21:43 7.9K 
[ ]archr_markers_cross_species.R2022-06-01 19:34 3.1K 
[ ]archr_markers_cross_species_l2.R2022-06-02 06:13 3.1K 
[ ]archr_markers_cross_species_l3.R2022-06-04 00:21 3.1K 
[ ]archr_markers_l2_all_ameen.R2022-06-02 06:13 3.8K 
[ ]archr_markers_l2_all_hu.R2022-06-02 06:13 4.4K 
[ ]archr_markers_l3_all_ameen.R2022-06-04 00:21 3.8K 
[ ]archr_markers_l3_all_hu.R2022-06-04 00:21 4.4K 
[ ]archr_markers_merged.R2022-04-07 06:43 3.9K 
[ ]archr_markers_merged_all_ameen.R2022-05-31 01:53 3.8K 
[ ]archr_markers_merged_all_hu.R2022-05-31 01:53 4.4K 
[ ]archr_verify_rna.R2022-04-06 23:06 4.4K 
[TXT]bam_to_fragments.py2022-01-26 20:39 1.8K 
[TXT]build_archr_blacklist.py2022-02-02 05:21 2.5K 
[ ]build_archr_genome.R2022-01-27 07:05 2.1K 
[ ]build_archr_project.R2022-03-30 21:49 2.5K 
[ ]build_archr_project_merged.R2022-03-30 22:52 2.8K 
[TXT]build_browser_washu.py2022-07-13 04:04 1.3K 
[ ]build_bsgenome.R2022-01-27 04:26 666  
[TXT]build_bsgenome_seed.py2022-01-26 22:57 1.2K 
[ ]build_seurat_peak_project.R2022-05-06 03:16 1.0K 
[ ]build_seurat_project.R2022-05-03 20:28 1.6K 
[TXT]build_track_datahub.py2022-07-12 23:56 2.7K 
[TXT]calc_effective_sizes.py2022-01-13 23:33 1.4K 
[TXT]cellspace_cell_metadata.py2022-06-16 17:54 1.1K 
[TXT]cellspace_matrix_stack.py2022-06-15 19:47 1.5K 
[TXT]cellspace_matrix_tile.py2022-06-16 17:54 470  
[TXT]cellspace_matrix_tile_metadata.py2022-06-16 17:54 950  
[TXT]cellspace_peak_pileup.py2022-06-15 18:40 3.9K 
[ ]cellspace_plot_umap.R2022-06-17 17:13 1.6K 
[ ]cellspace_postprocess.R2022-06-17 15:53 2.2K 
[TXT]clip_bed.py2022-01-14 01:44 649  
[TXT]cluster_bc_translate.py2022-02-03 06:25 630  
[TXT]create_splits.py2022-01-19 05:41 2.6K 
[TXT]filter_mito.py2022-01-13 19:58 822  
[TXT]get_anchor_barcodes.py2022-05-05 22:03 1.6K 
[TXT]get_gene_plot_data.py2023-02-12 02:22 3.2K 
[TXT]get_top_marker_data.py2022-07-07 21:41 3.4K 
[TXT]gtf_chrom_rename.py2022-02-02 05:21 2.6K 
[TXT]kmer_cluster_compare.py2022-04-10 02:11 1.1K 
[TXT]kmer_embed.py2022-04-14 13:49 2.3K 
[TXT]kmer_pileup.py2022-04-10 19:09 8.6K 
[TXT]map_chain_aliases.py2022-07-12 04:08 823  
[TXT]organize_gene_matrix.py2022-03-02 06:09 2.3K 
[TXT]organize_ortho_matrix.py2022-05-01 23:25 2.3K 
[TXT]paf_to_bed.py2022-07-08 07:50 808  
[TXT]parse_bc.py2021-12-29 06:02 1.1K 
[TXT]partition_barcodes.py2022-01-13 19:58 1.2K 
[TXT]peak_matrix_aggregate.py2022-05-06 01:41 1.7K 
[TXT]peak_matrix_cellspace.py2022-06-11 06:32 1.5K 
[TXT]peak_matrix_sparsify.py2022-05-06 03:33 787  
[TXT]peak_pileup.py2022-05-05 22:21 4.0K 
[TXT]plot_peak_counts.py2022-01-14 05:43 1.2K 
[ ]setup_kernel.R2022-03-03 02:18 42  
[ ]seurat_cell_integrate.R2022-05-03 21:13 1.6K 
[ ]seurat_merge.R2022-05-02 22:08 724  
[ ]seurat_peak_integrate.R2022-05-06 03:14 1.6K 
[TXT]split_alignments.py2022-04-18 01:14 1.3K 
[TXT]split_fragments.py2022-02-02 05:21 1.0K 
[TXT]split_genome.py2022-02-04 17:10 3.1K 
[TXT]transform_fragments.py2022-02-02 05:27 1.6K 
[TXT]transform_ortholog_coordinates.py2022-07-08 08:05 817  
[TXT]xs_chrombpnet_global_visualize.py2022-07-20 22:41 1.1K 
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