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| Files | Path |
|---|
| Alignment | |
| Replicate 1 | |
| TAG-ALIGN | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/align/rep1/filtered.tn5.tagAlign.gz |
| Peak | |
| Replicate 1 | |
| Blacklist-filtered narrowpeak | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/peak/rep1/filtered.tn5.pval0.01.300K.bfilt.narrowPeak.gz |
| Blacklist-filtered narrowpeak (BigBed) | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/peak/rep1/filtered.tn5.pval0.01.300K.bfilt.narrowPeak.bb |
| Blacklist-filtered narrowpeak (hammock) | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/peak/rep1/filtered.tn5.pval0.01.300K.bfilt.narrowPeak.hammock.gz |
| Blacklist-filtered narrowpeak (starch) | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/peak/rep1/filtered.tn5.pval0.01.300K.bfilt.narrowPeak.starch |
| Raw narrowpeak | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/peak/rep1/filtered.tn5.pval0.01.300K.narrowPeak.gz |
| QC and logs | |
| Replicate 1 | |
| Fraction of peaks in reads | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/qc/rep1/filtered.tn5.pval0.01.300K.bfilt.frip.qc |
| Final HTML report | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/qc/qc.html |
| Final QC JSON file | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/qc/qc.json |
| Jensen-Shannon distance plot | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/qc/filtered.jsd_plot.png |
| Signal | |
| Replicate 1 | |
| MACS2 signal track (fold-enrichment) | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/signal/rep1/filtered.tn5.fc.signal.bigwig |
| MACS2 signal track (p-val) | gs://caper_out/encode_scatac_4/atac/croo/ENCSR604PDO-1/signal/rep1/filtered.tn5.pval.signal.bigwig |