Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3767)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 20284)	% of Background Sequences with Motif
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-201	-4.644e+02	0.0000	1339.0	35.55%	3121.7	15.39%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-168	-3.876e+02	0.0000	838.0	22.25%	1570.3	7.74%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-67	-1.547e+02	0.0000	1777.0	47.17%	6787.6	33.46%
SeqBias: CG-repeat	CGCGCGCGCG	1e-63	-1.459e+02	0.0000	730.0	19.38%	2062.7	10.17%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-57	-1.313e+02	0.0000	540.0	14.34%	1392.7	6.87%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-45	-1.049e+02	0.0000	990.0	26.28%	3452.8	17.02%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-45	-1.042e+02	0.0000	398.0	10.57%	985.9	4.86%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-44	-1.017e+02	0.0000	384.0	10.19%	945.1	4.66%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-41	-9.512e+01	0.0000	599.0	15.90%	1821.6	8.98%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-38	-8.881e+01	0.0000	513.0	13.62%	1508.5	7.44%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-37	-8.692e+01	0.0000	442.0	11.73%	1236.4	6.09%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-35	-8.134e+01	0.0000	352.0	9.34%	919.5	4.53%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-29	-6.824e+01	0.0000	535.0	14.20%	1736.1	8.56%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-28	-6.621e+01	0.0000	478.0	12.69%	1510.6	7.45%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-28	-6.620e+01	0.0000	530.0	14.07%	1730.9	8.53%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-24	-5.744e+01	0.0000	389.0	10.33%	1201.2	5.92%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-24	-5.610e+01	0.0000	781.0	20.73%	2944.6	14.52%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-23	-5.503e+01	0.0000	123.0	3.27%	226.3	1.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-22	-5.209e+01	0.0000	129.0	3.42%	253.8	1.25%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-22	-5.205e+01	0.0000	727.0	19.30%	2737.0	13.49%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-21	-5.003e+01	0.0000	1197.0	31.78%	5024.3	24.77%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-20	-4.786e+01	0.0000	846.0	22.46%	3344.4	16.49%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-19	-4.395e+01	0.0000	966.0	25.64%	3973.9	19.59%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-18	-4.358e+01	0.0000	1655.0	43.93%	7460.9	36.78%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-17	-4.048e+01	0.0000	379.0	10.06%	1287.5	6.35%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-16	-3.854e+01	0.0000	503.0	13.35%	1855.9	9.15%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-16	-3.847e+01	0.0000	946.0	25.11%	3954.5	19.49%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-16	-3.707e+01	0.0000	700.0	18.58%	2787.7	13.74%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-14	-3.418e+01	0.0000	289.0	7.67%	954.5	4.70%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-13	-3.156e+01	0.0000	1241.0	32.94%	5545.2	27.33%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-13	-3.075e+01	0.0000	230.0	6.11%	733.5	3.62%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-12	-2.983e+01	0.0000	687.0	18.24%	2825.9	13.93%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-12	-2.935e+01	0.0000	259.0	6.88%	866.2	4.27%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-12	-2.888e+01	0.0000	147.0	3.90%	413.0	2.04%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-12	-2.821e+01	0.0000	425.0	11.28%	1614.2	7.96%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-11	-2.733e+01	0.0000	2624.0	69.66%	13034.9	64.25%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-11	-2.566e+01	0.0000	300.0	7.96%	1078.3	5.32%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-10	-2.460e+01	0.0000	277.0	7.35%	987.9	4.87%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-10	-2.449e+01	0.0000	277.0	7.35%	988.3	4.87%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-9	-2.125e+01	0.0000	117.0	3.11%	340.4	1.68%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-8	-1.851e+01	0.0000	531.0	14.10%	2252.4	11.10%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.806e+01	0.0000	138.0	3.66%	447.1	2.20%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-7	-1.788e+01	0.0000	460.0	12.21%	1920.4	9.47%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.708e+01	0.0000	1247.0	33.10%	5896.3	29.07%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.707e+01	0.0000	906.0	24.05%	4146.7	20.44%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-6	-1.482e+01	0.0000	96.0	2.55%	298.6	1.47%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-5	-1.376e+01	0.0000	126.0	3.34%	432.9	2.13%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-5	-1.301e+01	0.0000	738.0	19.59%	3394.9	16.73%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-5	-1.280e+01	0.0000	262.0	6.96%	1059.5	5.22%
SeqBias: TA-repeat	TATATATATA	1e-5	-1.190e+01	0.0001	3287.0	87.26%	17193.2	84.75%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-4	-1.064e+01	0.0002	641.0	17.02%	2965.5	14.62%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-4	-1.022e+01	0.0003	1399.0	37.14%	6906.7	34.05%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-4	-1.022e+01	0.0003	158.0	4.19%	612.8	3.02%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4	-9.958e+00	0.0003	450.0	11.95%	2024.2	9.98%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-4	-9.860e+00	0.0004	108.0	2.87%	391.3	1.93%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-4	-9.772e+00	0.0004	86.0	2.28%	296.1	1.46%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-4	-9.604e+00	0.0005	622.0	16.51%	2897.6	14.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-9.515e+00	0.0005	172.0	4.57%	686.9	3.39%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-4	-9.402e+00	0.0005	63.0	1.67%	202.9	1.00%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-4	-9.402e+00	0.0005	63.0	1.67%	202.9	1.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-9.209e+00	0.0006	99.0	2.63%	358.4	1.77%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-8.824e+00	0.0009	1153.0	30.61%	5665.3	27.93%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-8.645e+00	0.0011	453.0	12.03%	2071.8	10.21%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.394e+00	0.0014	192.0	5.10%	797.5	3.93%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-8.092e+00	0.0018	405.0	10.75%	1845.5	9.10%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-3	-8.014e+00	0.0019	185.0	4.91%	770.7	3.80%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.690e+00	0.0026	536.0	14.23%	2516.7	12.41%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-7.638e+00	0.0027	298.0	7.91%	1325.6	6.53%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-7.317e+00	0.0037	436.0	11.57%	2021.7	9.97%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-7.087e+00	0.0046	481.0	12.77%	2256.0	11.12%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-6.946e+00	0.0052	478.0	12.69%	2244.7	11.06%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-6.827e+00	0.0058	39.0	1.04%	122.3	0.60%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-6.715e+00	0.0064	41.0	1.09%	131.1	0.65%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-2	-6.674e+00	0.0066	1455.0	38.62%	7351.5	36.24%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.672e+00	0.0066	682.0	18.10%	3297.7	16.26%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.450e+00	0.0081	162.0	4.30%	687.6	3.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.443e+00	0.0081	46.0	1.22%	154.9	0.76%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2	-5.982e+00	0.0125	38.0	1.01%	124.5	0.61%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.982e+00	0.0125	171.0	4.54%	739.6	3.65%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.952e+00	0.0126	74.0	1.96%	282.6	1.39%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-5.830e+00	0.0140	671.0	17.81%	3272.9	16.13%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-2	-5.590e+00	0.0176	185.0	4.91%	815.5	4.02%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-2	-5.471e+00	0.0196	33.0	0.88%	107.1	0.53%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-5.371e+00	0.0214	222.0	5.89%	1002.7	4.94%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-2	-5.343e+00	0.0218	451.0	11.97%	2158.1	10.64%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-2	-5.268e+00	0.0232	39.0	1.04%	134.5	0.66%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.072e+00	0.0279	342.0	9.08%	1612.7	7.95%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-2	-4.873e+00	0.0336	43.0	1.14%	155.3	0.77%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-4.743e+00	0.0379	53.0	1.41%	202.0	1.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-4.584e+00	0.0439	29.0	0.77%	97.8	0.48%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.513e+00	0.0466	91.0	2.42%	381.8	1.88%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.228e+00	0.0613	609.0	16.17%	3018.8	14.88%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.130e+00	0.0669	72.0	1.91%	297.2	1.46%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-3.981e+00	0.0769	34.0	0.90%	124.3	0.61%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.941e+00	0.0791	229.0	6.08%	1075.8	5.30%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.881e+00	0.0832	85.0	2.26%	363.1	1.79%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.865e+00	0.0836	92.0	2.44%	397.9	1.96%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.737e+00	0.0941	61.0	1.62%	251.4	1.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.698e+00	0.0969	40.0	1.06%	154.5	0.76%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.670e+00	0.0986	165.0	4.38%	761.7	3.75%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.399e+00	0.1279	115.0	3.05%	519.6	2.56%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.389e+00	0.1281	104.0	2.76%	465.4	2.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.257e+00	0.1447	29.0	0.77%	109.9	0.54%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.173e+00	0.1559	134.0	3.56%	619.9	3.06%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.172e+00	0.1559	201.0	5.34%	957.3	4.72%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.942e+00	0.1927	987.0	26.20%	5081.0	25.05%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.897e+00	0.1996	394.0	10.46%	1962.7	9.67%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.869e+00	0.2033	46.0	1.22%	193.5	0.95%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.797e+00	0.2165	74.0	1.96%	330.8	1.63%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-2.787e+00	0.2167	2938.0	77.99%	15605.1	76.92%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.718e+00	0.2301	987.0	26.20%	5096.1	25.12%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.703e+00	0.2316	102.0	2.71%	472.0	2.33%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.590e+00	0.2568	31.0	0.82%	126.0	0.62%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.562e+00	0.2619	29.0	0.77%	117.4	0.58%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.529e+00	0.2684	117.0	3.11%	551.3	2.72%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.339e+00	0.3218	83.0	2.20%	385.0	1.90%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.317e+00	0.3262	574.0	15.24%	2938.3	14.48%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.277e+00	0.3366	124.0	3.29%	594.1	2.93%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.253e+00	0.3417	168.0	4.46%	820.2	4.04%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.222e+00	0.3496	269.0	7.14%	1344.2	6.63%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.199e+00	0.3549	706.0	18.74%	3644.1	17.96%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.105e+00	0.3865	37.0	0.98%	162.0	0.80%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-2.102e+00	0.3865	16.0	0.42%	62.1	0.31%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.986e+00	0.4282	568.0	15.08%	2929.6	14.44%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.957e+00	0.4376	134.0	3.56%	656.0	3.23%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.944e+00	0.4394	131.0	3.48%	641.5	3.16%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.933e+00	0.4408	135.0	3.58%	662.4	3.27%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.880e+00	0.4611	479.0	12.72%	2466.5	12.16%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.866e+00	0.4642	55.0	1.46%	256.1	1.26%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.842e+00	0.4718	920.0	24.42%	4812.0	23.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.831e+00	0.4732	395.0	10.49%	2026.9	9.99%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.722e+00	0.5239	505.0	13.41%	2615.6	12.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.533e+00	0.6281	390.0	10.35%	2020.6	9.96%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.499e+00	0.6449	302.0	8.02%	1557.5	7.68%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.462e+00	0.6647	757.0	20.10%	3978.6	19.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.451e+00	0.6670	114.0	3.03%	572.5	2.82%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.418e+00	0.6840	311.0	8.26%	1610.4	7.94%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.406e+00	0.6874	5.0	0.13%	18.3	0.09%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.393e+00	0.6911	224.0	5.95%	1152.9	5.68%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.254e+00	0.7888	158.0	4.19%	813.0	4.01%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.249e+00	0.7888	62.0	1.65%	310.0	1.53%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.185e+00	0.8331	11.0	0.29%	49.5	0.24%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.179e+00	0.8331	192.0	5.10%	996.3	4.91%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.138e+00	0.8609	139.0	3.69%	718.1	3.54%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.132e+00	0.8609	43.0	1.14%	214.9	1.06%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.041e+00	0.9359	48.0	1.27%	243.3	1.20%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.039e+00	0.9359	6.0	0.16%	26.6	0.13%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.035e+00	0.9359	1136.0	30.16%	6059.2	29.87%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.560e-01	0.9984	7.0	0.19%	32.4	0.16%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.311e-01	1.0000	272.0	7.22%	1440.1	7.10%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-9.286e-01	1.0000	3767.0	100.00%	20281.2	99.97%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.136e-01	1.0000	767.0	20.36%	4095.6	20.19%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.003e-01	1.0000	195.0	5.18%	1031.2	5.08%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.494e-01	1.0000	48.0	1.27%	250.8	1.24%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.372e-01	1.0000	71.0	1.88%	373.0	1.84%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.304e-01	1.0000	73.0	1.94%	384.3	1.89%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.479e-01	1.0000	716.0	19.01%	3846.0	18.96%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.417e-01	1.0000	85.0	2.26%	453.6	2.24%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.283e-01	1.0000	9.0	0.24%	46.8	0.23%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.167e-01	1.0000	97.0	2.57%	519.9	2.56%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.738e-01	1.0000	921.0	24.45%	4961.4	24.46%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.726e-01	1.0000	54.0	1.43%	290.8	1.43%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.044e-01	1.0000	742.0	19.70%	4009.6	19.76%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.950e-01	1.0000	113.0	3.00%	614.6	3.03%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.871e-01	1.0000	369.0	9.80%	1999.2	9.86%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.871e-01	1.0000	76.0	2.02%	414.9	2.05%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.726e-01	1.0000	90.0	2.39%	491.5	2.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.671e-01	1.0000	18.0	0.48%	99.3	0.49%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-5.571e-01	1.0000	3767.0	100.00%	20283.2	99.98%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.068e-01	1.0000	16.0	0.42%	90.0	0.44%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.948e-01	1.0000	493.0	13.09%	2684.5	13.23%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.875e-01	1.0000	146.0	3.88%	803.4	3.96%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.851e-01	1.0000	110.0	2.92%	607.4	2.99%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.791e-01	1.0000	40.0	1.06%	224.1	1.10%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.729e-01	1.0000	14.0	0.37%	80.2	0.40%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.691e-01	1.0000	155.0	4.11%	854.3	4.21%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.587e-01	1.0000	571.0	15.16%	3114.0	15.35%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.546e-01	1.0000	404.0	10.72%	2209.4	10.89%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.362e-01	1.0000	572.0	15.18%	3123.9	15.40%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.301e-01	1.0000	33.0	0.88%	188.2	0.93%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-4.222e-01	1.0000	178.0	4.73%	985.9	4.86%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.977e-01	1.0000	1.0	0.03%	6.8	0.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-3.791e-01	1.0000	3.0	0.08%	19.5	0.10%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.736e-01	1.0000	150.0	3.98%	839.0	4.14%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.704e-01	1.0000	1221.0	32.41%	6650.9	32.79%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.668e-01	1.0000	196.0	5.20%	1091.8	5.38%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.614e-01	1.0000	22.0	0.58%	130.4	0.64%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.452e-01	1.0000	229.0	6.08%	1275.2	6.29%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.127e-01	1.0000	73.0	1.94%	420.4	2.07%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.066e-01	1.0000	199.0	5.28%	1117.8	5.51%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.036e-01	1.0000	204.0	5.42%	1145.8	5.65%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.001e-01	1.0000	332.0	8.81%	1847.2	9.11%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.994e-01	1.0000	1282.0	34.03%	7003.5	34.52%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.990e-01	1.0000	153.0	4.06%	865.5	4.27%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.976e-01	1.0000	799.0	21.21%	4390.0	21.64%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.815e-01	1.0000	950.0	25.22%	5213.2	25.70%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.767e-01	1.0000	342.0	9.08%	1907.6	9.40%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.691e-01	1.0000	10.0	0.27%	65.2	0.32%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.666e-01	1.0000	287.0	7.62%	1608.0	7.93%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.648e-01	1.0000	128.0	3.40%	732.4	3.61%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.596e-01	1.0000	821.0	21.79%	4521.7	22.29%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.593e-01	1.0000	585.0	15.53%	3238.7	15.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.568e-01	1.0000	55.0	1.46%	325.4	1.60%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.548e-01	1.0000	64.0	1.70%	376.8	1.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.414e-01	1.0000	7.0	0.19%	48.2	0.24%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.301e-01	1.0000	91.0	2.42%	531.2	2.62%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.227e-01	1.0000	794.0	21.08%	4388.2	21.63%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.222e-01	1.0000	1415.0	37.56%	7753.0	38.22%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.021e-01	1.0000	515.0	13.67%	2875.7	14.18%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.913e-01	1.0000	28.0	0.74%	177.7	0.88%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.900e-01	1.0000	353.0	9.37%	1992.0	9.82%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.857e-01	1.0000	3767.0	100.00%	20286.3	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	-1.857e-01	1.0000	3767.0	100.00%	20286.3	100.00%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.840e-01	1.0000	33.0	0.88%	207.5	1.02%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.829e-01	1.0000	104.0	2.76%	613.0	3.02%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.602e-01	1.0000	339.0	9.00%	1924.6	9.49%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.576e-01	1.0000	22.0	0.58%	145.2	0.72%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.576e-01	1.0000	22.0	0.58%	145.3	0.72%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.492e-01	1.0000	1484.0	39.39%	8165.8	40.25%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.474e-01	1.0000	181.0	4.80%	1052.8	5.19%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.470e-01	1.0000	174.0	4.62%	1013.2	4.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.409e-01	1.0000	450.0	11.95%	2543.8	12.54%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.327e-01	1.0000	262.0	6.96%	1508.6	7.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.283e-01	1.0000	355.0	9.42%	2025.1	9.98%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.218e-01	1.0000	57.0	1.51%	356.2	1.76%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.168e-01	1.0000	1823.0	48.39%	10017.8	49.38%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.162e-01	1.0000	306.0	8.12%	1759.4	8.67%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.091e-01	1.0000	83.0	2.20%	509.1	2.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.028e-01	1.0000	1125.0	29.86%	6253.3	30.83%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.196e-02	1.0000	113.0	3.00%	686.1	3.38%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.784e-02	1.0000	254.0	6.74%	1483.8	7.31%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.933e-02	1.0000	28.0	0.74%	193.9	0.96%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-7.524e-02	1.0000	1187.0	31.51%	6615.2	32.61%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.981e-02	1.0000	392.0	10.41%	2263.2	11.16%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.456e-02	1.0000	295.0	7.83%	1734.7	8.55%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.393e-02	1.0000	13.0	0.35%	104.3	0.51%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.350e-02	1.0000	120.0	3.19%	743.2	3.66%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.229e-02	1.0000	16.0	0.42%	124.6	0.61%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.207e-02	1.0000	613.0	16.27%	3502.3	17.26%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-4.525e-02	1.0000	38.0	1.01%	264.0	1.30%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.210e-02	1.0000	172.0	4.57%	1049.2	5.17%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.762e-02	1.0000	831.0	22.06%	4721.4	23.27%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-3.716e-02	1.0000	3762.0	99.87%	20273.6	99.94%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.359e-02	1.0000	345.0	9.16%	2036.0	10.04%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.187e-02	1.0000	579.0	15.37%	3343.0	16.48%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-3.057e-02	1.0000	1535.0	40.75%	8570.4	42.25%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.862e-02	1.0000	80.0	2.12%	526.0	2.59%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-2.619e-02	1.0000	1416.0	37.59%	7936.2	39.12%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.252e-02	1.0000	438.0	11.63%	2575.1	12.69%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.155e-02	1.0000	3.0	0.08%	40.5	0.20%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.067e-02	1.0000	269.0	7.14%	1627.1	8.02%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.030e-02	1.0000	1079.0	28.64%	6118.0	30.16%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.590e-02	1.0000	1109.0	29.44%	6297.2	31.04%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.409e-02	1.0000	388.0	10.30%	2315.2	11.41%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.277e-02	1.0000	124.0	3.29%	806.2	3.97%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.155e-02	1.0000	312.0	8.28%	1893.7	9.33%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.119e-02	1.0000	94.0	2.50%	631.8	3.11%
SeqBias: CG bias	SSSSSSSSSS	1e0	-9.124e-03	1.0000	3159.0	83.86%	17289.0	85.22%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.083e-03	1.0000	679.0	18.02%	3961.1	19.53%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.071e-03	1.0000	318.0	8.44%	1936.8	9.55%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.012e-03	1.0000	150.0	3.98%	968.3	4.77%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.041e-03	1.0000	624.0	16.56%	3661.3	18.05%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.835e-03	1.0000	363.0	9.64%	2197.9	10.83%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.848e-03	1.0000	325.0	8.63%	1986.7	9.79%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.078e-03	1.0000	720.0	19.11%	4208.2	20.74%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-5.720e-03	1.0000	1108.0	29.41%	6350.6	31.30%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.461e-03	1.0000	404.0	10.72%	2443.8	12.05%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.165e-03	1.0000	265.0	7.03%	1652.3	8.15%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.924e-03	1.0000	188.0	4.99%	1207.8	5.95%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.904e-03	1.0000	158.0	4.19%	1031.6	5.09%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.784e-03	1.0000	544.0	14.44%	3237.4	15.96%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-3.643e-03	1.0000	1027.0	27.26%	5929.2	29.23%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.575e-03	1.0000	200.0	5.31%	1286.8	6.34%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.487e-03	1.0000	35.0	0.93%	285.7	1.41%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.355e-03	1.0000	31.0	0.82%	259.4	1.28%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.079e-03	1.0000	815.0	21.64%	4767.8	23.50%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.046e-03	1.0000	77.0	2.04%	554.3	2.73%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.937e-03	1.0000	281.0	7.46%	1762.7	8.69%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.581e-03	1.0000	3764.0	99.92%	20283.8	99.99%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.501e-03	1.0000	155.0	4.11%	1030.2	5.08%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.354e-03	1.0000	137.0	3.64%	924.9	4.56%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.353e-03	1.0000	591.0	15.69%	3530.7	17.40%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.443e-03	1.0000	659.0	17.49%	3931.5	19.38%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.055e-03	1.0000	576.0	15.29%	3477.2	17.14%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-9.400e-04	1.0000	5.0	0.13%	80.1	0.39%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.220e-04	1.0000	188.0	4.99%	1253.2	6.18%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.430e-04	1.0000	347.0	9.21%	2185.6	10.77%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.130e-04	1.0000	822.0	21.82%	4876.5	24.04%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.610e-04	1.0000	63.0	1.67%	494.8	2.44%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.210e-04	1.0000	252.0	6.69%	1648.8	8.13%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.640e-04	1.0000	73.0	1.94%	565.2	2.79%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.410e-04	1.0000	488.0	12.95%	3018.1	14.88%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.320e-04	1.0000	243.0	6.45%	1601.9	7.90%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.170e-04	1.0000	1514.0	40.19%	8708.1	42.93%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.770e-04	1.0000	172.0	4.57%	1182.1	5.83%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.520e-04	1.0000	171.0	4.54%	1178.4	5.81%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.470e-04	1.0000	1349.0	35.81%	7820.7	38.55%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.190e-04	1.0000	513.0	13.62%	3175.9	15.66%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.040e-04	1.0000	1562.0	41.47%	8988.5	44.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.810e-04	1.0000	40.0	1.06%	357.0	1.76%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.610e-04	1.0000	182.0	4.83%	1254.6	6.18%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.160e-04	1.0000	489.0	12.98%	3058.5	15.08%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.100e-04	1.0000	540.0	14.34%	3351.1	16.52%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.600e-05	1.0000	550.0	14.60%	3435.3	16.93%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.000e-05	1.0000	1237.0	32.84%	7280.1	35.89%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-3.700e-05	1.0000	606.0	16.09%	3761.4	18.54%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.100e-05	1.0000	561.0	14.89%	3522.5	17.36%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.400e-05	1.0000	1228.0	32.60%	7271.3	35.84%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.100e-05	1.0000	1093.0	29.02%	6532.0	32.20%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-9.000e-06	1.0000	72.0	1.91%	612.6	3.02%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-8.000e-06	1.0000	1460.0	38.76%	8561.5	42.20%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.000e-06	1.0000	1432.0	38.01%	8409.1	41.45%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.000e-06	1.0000	415.0	11.02%	2709.1	13.35%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.000e-06	1.0000	598.0	15.87%	3768.8	18.58%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-6.000e-06	1.0000	357.0	9.48%	2371.3	11.69%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.000e-06	1.0000	879.0	23.33%	5361.7	26.43%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.000e-06	1.0000	961.0	25.51%	5822.6	28.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.000e-06	1.0000	344.0	9.13%	2300.8	11.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.000e-06	1.0000	1295.0	34.38%	7718.5	38.05%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.000e-06	1.0000	1489.0	39.53%	8800.3	43.38%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.000e-06	1.0000	1199.0	31.83%	7212.8	35.55%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-0.000e+00	1.0000	820.0	21.77%	5118.0	25.23%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	704.0	18.69%	4466.9	22.02%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	863.0	22.91%	5374.9	26.50%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	1883.0	49.99%	10986.5	54.16%
Tal1	CATCTG	1e0	-0.000e+00	1.0000	765.0	20.31%	4831.5	23.82%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	1251.0	33.21%	7557.4	37.25%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	1570.0	41.68%	9305.1	45.87%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-0.000e+00	1.0000	572.0	15.18%	3728.8	18.38%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	277.0	7.35%	1982.2	9.77%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-0.000e+00	1.0000	836.0	22.19%	5249.5	25.88%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-0.000e+00	1.0000	728.0	19.33%	4640.4	22.87%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-0.000e+00	1.0000	395.0	10.49%	2703.7	13.33%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-0.000e+00	1.0000	713.0	18.93%	4568.6	22.52%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	1715.0	45.53%	10146.9	50.02%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	1734.0	46.03%	10252.9	50.54%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	1361.0	36.13%	8233.0	40.58%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	875.0	23.23%	5523.7	27.23%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	1034.0	27.45%	6432.9	31.71%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	1045.0	27.74%	6497.8	32.03%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-0.000e+00	1.0000	546.0	14.49%	3646.4	17.97%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-0.000e+00	1.0000	1231.0	32.68%	7546.1	37.20%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	1803.0	47.86%	10687.8	52.68%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	1420.0	37.70%	8618.2	42.48%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	1475.0	39.16%	8922.7	43.98%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-0.000e+00	1.0000	110.0	2.92%	1003.9	4.95%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	436.0	11.57%	3056.4	15.07%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-0.000e+00	1.0000	242.0	6.42%	1866.4	9.20%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	645.0	17.12%	4306.3	21.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	1268.0	33.66%	7839.2	38.64%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	2509.0	66.60%	14508.3	71.52%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	2088.0	55.43%	12327.0	60.77%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	1701.0	45.16%	10288.5	50.72%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-0.000e+00	1.0000	1102.0	29.25%	7009.9	34.56%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2022.0	53.68%	12022.0	59.26%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-0.000e+00	1.0000	1388.0	36.85%	8626.6	42.52%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-0.000e+00	1.0000	843.0	22.38%	5596.4	27.59%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	846.0	22.46%	5634.7	27.78%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-0.000e+00	1.0000	3197.0	84.87%	18028.2	88.87%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-0.000e+00	1.0000	1506.0	39.98%	9353.6	46.11%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	1779.0	47.23%	10871.0	53.59%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-0.000e+00	1.0000	1495.0	39.69%	9341.5	46.05%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-0.000e+00	1.0000	1885.0	50.04%	11507.3	56.72%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	1714.0	45.50%	10589.9	52.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	207.0	5.50%	1839.5	9.07%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	0.000e+00	1.0000	765.0	20.31%	5742.2	28.31%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	14.4	0.07%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	1796.0	47.68%	11206.9	55.24%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	962.0	25.54%	6805.3	33.55%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	0.000e+00	1.0000	2016.0	53.52%	12331.4	60.79%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	2854.0	75.76%	17825.3	87.87%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	0.000e+00	1.0000	2780.0	73.80%	17128.5	84.43%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	2790.0	74.06%	17434.8	85.94%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.01%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	0.000e+00	1.0000	1797.0	47.70%	12185.5	60.07%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	0.000e+00	1.0000	409.0	10.86%	3293.5	16.24%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	0.000e+00	1.0000	1994.0	52.93%	12456.9	61.41%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	0.000e+00	1.0000	2125.0	56.41%	12799.7	63.10%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.00%
SeqBias: CA-repeat	CACACACACA	1e0	0.000e+00	1.0000	2743.0	72.82%	16581.3	81.74%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	3735.0	99.15%	20276.3	99.95%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	0.000e+00	1.0000	1108.0	29.41%	7358.0	36.27%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	0.000e+00	1.0000	1850.0	49.11%	11374.0	56.07%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	0.000e+00	1.0000	2291.0	60.82%	13718.9	67.63%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	0.000e+00	1.0000	1722.0	45.71%	10699.4	52.74%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	0.000e+00	1.0000	1578.0	41.89%	9902.9	48.82%