Motif Name Consensus P-value Log P-value q-value (Benjamini) # of Target Sequences with Motif(of 4183) % of Target Sequences with Motif # of Background Sequences with Motif(of 20698) % of Background Sequences with Motif ABF1/SacCer-Promoters/Homer CGTRNAAARTGA 1e-222 -5.126e+02 0.0000 1469.0 35.12% 3129.6 15.12% REB1/SacCer-Promoters/Homer KCCGGGTAAYRR 1e-182 -4.199e+02 0.0000 943.0 22.54% 1664.8 8.05% RLR1?/SacCer-Promoters/Homer WTTTTCYYTTTT 1e-82 -1.889e+02 0.0000 2052.0 49.06% 7150.5 34.56% SeqBias: CG-repeat CGCGCGCGCG 1e-58 -1.339e+02 0.0000 771.0 18.43% 2098.4 10.14% c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer VCCACGTG 1e-52 -1.204e+02 0.0000 566.0 13.53% 1413.3 6.83% bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer KCACGTGMCN 1e-45 -1.049e+02 0.0000 427.0 10.21% 997.8 4.82% DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer TAGCGCGC 1e-43 -1.001e+02 0.0000 1055.0 25.22% 3461.6 16.73% Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer TCACGTGAYH 1e-43 -9.939e+01 0.0000 409.0 9.78% 960.0 4.64% n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer VRCCACGTGG 1e-42 -9.792e+01 0.0000 636.0 15.20% 1790.1 8.65% SFP1/SacCer-Promoters/Homer DDAAAAATTTTY 1e-37 -8.541e+01 0.0000 619.0 14.80% 1802.5 8.71% CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer GHCACGTG 1e-36 -8.453e+01 0.0000 547.0 13.08% 1532.5 7.41% USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer SGTCACGTGR 1e-35 -8.229e+01 0.0000 472.0 11.28% 1265.1 6.11% Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer GTCACGTGGT 1e-34 -7.864e+01 0.0000 380.0 9.08% 952.0 4.60% Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer CCCACGTGCT 1e-29 -6.896e+01 0.0000 419.0 10.02% 1144.2 5.53% E-box(bHLH)/Promoter/Homer SSGGTCACGTGA 1e-27 -6.414e+01 0.0000 132.0 3.16% 210.4 1.02% Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer RCCACGTGGYYN 1e-27 -6.237e+01 0.0000 558.0 13.34% 1722.3 8.32% E-box/Arabidopsis-Promoters/Homer GCCACGTG 1e-26 -6.107e+01 0.0000 498.0 11.91% 1495.2 7.23% TATA-box/SacCer-Promoters/Homer BBHWTATATA 1e-24 -5.755e+01 0.0000 1918.0 45.85% 7850.6 37.94% FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer HHCACGCGCBTN 1e-24 -5.669e+01 0.0000 421.0 10.06% 1228.0 5.93% Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer NGCGTGGGCGGR 1e-23 -5.435e+01 0.0000 129.0 3.08% 226.1 1.09% IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer CACGTGCC 1e-21 -4.992e+01 0.0000 1274.0 30.46% 4944.3 23.89% E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer GGCGGGAAAH 1e-21 -4.956e+01 0.0000 781.0 18.67% 2761.6 13.35% PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer BCACGTGVDN 1e-21 -4.906e+01 0.0000 819.0 19.58% 2930.6 14.16% TOD6?/SacCer-Promoters/Homer GCGATGAGMT 1e-21 -4.869e+01 0.0000 331.0 7.91% 937.5 4.53% PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer NNBCACGTGN 1e-18 -4.211e+01 0.0000 897.0 21.44% 3353.6 16.21% NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer KCCACGTGAC 1e-17 -3.930e+01 0.0000 764.0 18.26% 2804.3 13.55% SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer WNBCACGTGA 1e-16 -3.885e+01 0.0000 1020.0 24.38% 3946.9 19.07% KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer GGGGGTGTGTCC 1e-14 -3.327e+01 0.0000 242.0 5.79% 701.7 3.39% KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer RGKGGGCGKGGC 1e-14 -3.299e+01 0.0000 532.0 12.72% 1879.6 9.08% Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer TGCGTGGGYG 1e-13 -3.103e+01 0.0000 289.0 6.91% 899.8 4.35% Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer TBGCACGCAA 1e-11 -2.666e+01 0.0000 992.0 23.72% 4010.9 19.38% MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer RTCATGTGAC 1e-11 -2.598e+01 0.0000 731.0 17.48% 2839.2 13.72% KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer DGGGYGKGGC 1e-11 -2.572e+01 0.0000 444.0 10.61% 1588.6 7.68% ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer TGGGGAAGGGCM 1e-10 -2.531e+01 0.0000 299.0 7.15% 988.4 4.78% Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer GCCACACCCA 1e-10 -2.489e+01 0.0000 147.0 3.51% 400.9 1.94% Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer GGGGGGGG 1e-10 -2.442e+01 0.0000 276.0 6.60% 903.0 4.36% c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer VVCCACGTGG 1e-10 -2.401e+01 0.0000 315.0 7.53% 1066.0 5.15% BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer GNCACGTG 1e-10 -2.386e+01 0.0000 1326.0 31.70% 5619.2 27.16% SUT1?/SacCer-Promoters/Homer CCCCGCGC 1e-9 -2.150e+01 0.0000 2817.0 67.34% 12994.2 62.80% SeqBias: TA-repeat TATATATATA 1e-9 -2.133e+01 0.0000 3747.0 89.58% 17888.6 86.45% Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer GCCACRCCCACY 1e-9 -2.094e+01 0.0000 122.0 2.92% 332.5 1.61% Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer AAGCACGTGBGD 1e-8 -1.908e+01 0.0000 144.0 3.44% 427.0 2.06% BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer DATGASTCAT 1e-8 -1.901e+01 0.0000 588.0 14.06% 2311.4 11.17% CRE(bZIP)/Promoter/Homer CSGTGACGTCAC 1e-8 -1.887e+01 0.0000 200.0 4.78% 647.5 3.13% GAGA-repeat/Arabidopsis-Promoters/Homer CTCTCTCTCY 1e-7 -1.734e+01 0.0000 488.0 11.67% 1893.5 9.15% NRF(NRF)/Promoter/Homer STGCGCATGCGC 1e-7 -1.673e+01 0.0000 93.0 2.22% 251.9 1.22% HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer RTACGTGC 1e-7 -1.662e+01 0.0000 1555.0 37.17% 6885.7 33.28% HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer GCACGTACCC 1e-6 -1.565e+01 0.0000 692.0 16.54% 2843.5 13.74% PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer MGGAAGTGAAAC 1e-6 -1.409e+01 0.0000 1379.0 32.97% 6110.1 29.53% E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer CWGGCGGGAA 1e-6 -1.398e+01 0.0000 187.0 4.47% 641.1 3.10% EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer NWGGGTGTGGCY 1e-5 -1.367e+01 0.0000 97.0 2.32% 285.9 1.38% Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer GTCATGCHTGRCTGS 1e-5 -1.356e+01 0.0000 130.0 3.11% 414.2 2.00% ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer GGVTCTCGCGAGAAC 1e-5 -1.238e+01 0.0000 53.0 1.27% 132.6 0.64% HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer TACGTGCV 1e-4 -1.056e+01 0.0002 451.0 10.78% 1849.7 8.94% PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GTCACGCTCSCTGM 1e-4 -1.021e+01 0.0003 79.0 1.89% 241.8 1.17% Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer NNATGASTCATH 1e-4 -9.789e+00 0.0004 499.0 11.93% 2085.3 10.08% NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer CTGCGCATGCGC 1e-4 -9.665e+00 0.0004 40.0 0.96% 100.7 0.49% Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer NRYTTCCGGY 1e-4 -9.594e+00 0.0005 976.0 23.33% 4323.6 20.89% SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer AAAGRGGAAGTG 1e-4 -9.479e+00 0.0005 275.0 6.57% 1080.0 5.22% E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer VDTTTCCCGCCA 1e-3 -8.435e+00 0.0014 113.0 2.70% 394.7 1.91% TATA-box/Drosophila-Promoters/Homer CTATAAAAGCSV 1e-3 -8.245e+00 0.0017 203.0 4.85% 782.8 3.78% E2F(E2F)/Hela-CellCycle-Expression/Homer TTSGCGCGAAAA 1e-3 -8.051e+00 0.0020 117.0 2.80% 415.3 2.01% E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer GGCGGGAARN 1e-3 -7.990e+00 0.0021 265.0 6.34% 1061.5 5.13% p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer RRCATGYCYRGRCATGYYYN 1e-3 -7.966e+00 0.0021 63.0 1.51% 196.8 0.95% p53(p53)/Saos-p53-ChIP-Seq/Homer RRCATGYCYRGRCATGYYYN 1e-3 -7.966e+00 0.0021 63.0 1.51% 196.8 0.95% PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer GSCTGTCACTCA 1e-3 -7.739e+00 0.0026 33.0 0.79% 85.4 0.41% AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer VTGACTCATC 1e-3 -7.691e+00 0.0026 589.0 14.08% 2556.2 12.35% PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GCAGCCAAGCRTGACH 1e-3 -7.492e+00 0.0032 200.0 4.78% 781.4 3.78% Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer GTTGCCATGGCAACM 1e-3 -7.438e+00 0.0033 86.0 2.06% 293.6 1.42% PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer TGACCTTTGCCCCA 1e-3 -7.399e+00 0.0034 481.0 11.50% 2061.0 9.96% RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer TAGGGCAAAGGTCA 1e-3 -7.380e+00 0.0034 488.0 11.67% 2094.7 10.12% Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer GGGAAAAMCCCG 1e-3 -7.372e+00 0.0034 200.0 4.78% 783.1 3.78% Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer HACTTCCGGY 1e-3 -7.187e+00 0.0040 799.0 19.10% 3562.7 17.22% GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer CCGACAYYTYACGGG 1e-3 -7.148e+00 0.0041 43.0 1.03% 125.0 0.60% ETS(ETS)/Promoter/Homer AACCGGAAGT 1e-3 -6.918e+00 0.0051 333.0 7.96% 1391.6 6.73% RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer CGGTTGCCATGGCAAC 1e-2 -6.841e+00 0.0054 76.0 1.82% 258.8 1.25% Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer NRYTTCCGGH 1e-2 -6.763e+00 0.0058 1265.0 30.24% 5814.7 28.10% CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer AYAGTGCCMYCTRGTGGCCA 1e-2 -6.736e+00 0.0059 48.0 1.15% 147.5 0.71% GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer RACCGGAAGT 1e-2 -6.682e+00 0.0061 754.0 18.03% 3367.0 16.27% ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer AVCCGGAAGT 1e-2 -6.360e+00 0.0084 551.0 13.17% 2418.3 11.69% X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer GGTTGCCATGGCAA 1e-2 -6.339e+00 0.0084 122.0 2.92% 458.6 2.22% Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer NATGASTCABNN 1e-2 -6.218e+00 0.0094 177.0 4.23% 701.5 3.39% Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer RGAGAGAG 1e-2 -6.163e+00 0.0098 1590.0 38.01% 7422.8 35.87% Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer DATGASTCATHN 1e-2 -6.006e+00 0.0114 522.0 12.48% 2293.7 11.08% Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer AGGTGHCAGACA 1e-2 -5.660e+00 0.0159 98.0 2.34% 365.0 1.76% TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer GAGGTCAAAGGTCA 1e-2 -5.612e+00 0.0164 46.0 1.10% 148.1 0.72% BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer CNNBRGCGCCCCCTGSTGGC 1e-2 -5.429e+00 0.0195 37.0 0.88% 114.2 0.55% FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer NYYTGTTTACHN 1e-2 -5.258e+00 0.0229 705.0 16.85% 3186.5 15.40% Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer SCCTAGCAACAG 1e-2 -5.214e+00 0.0237 239.0 5.71% 1001.7 4.84% Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer MACAGGAAGT 1e-2 -4.697e+00 0.0392 193.0 4.61% 803.8 3.88% ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer ACAGGAAGTG 1e-2 -4.683e+00 0.0393 1100.0 26.30% 5112.3 24.71% EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer GGYAGCAYDTGCTDCCCNNN 1e-1 -4.506e+00 0.0465 14.0 0.33% 34.0 0.16% Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer KGTTGCCATGGCAA 1e-1 -4.437e+00 0.0492 166.0 3.97% 687.0 3.32% Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer GATGASTCATCN 1e-1 -4.316e+00 0.0550 86.0 2.06% 331.7 1.60% ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer AGGCCTAG 1e-1 -4.268e+00 0.0571 699.0 16.71% 3199.7 15.46% GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer CRGCTGBNGNSNNSAGATAA 1e-1 -4.184e+00 0.0614 96.0 2.30% 377.5 1.82% GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer CGTGGGTGGTCC 1e-1 -4.139e+00 0.0636 47.0 1.12% 166.9 0.81% Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer CCTGCTGAGH 1e-1 -4.069e+00 0.0675 371.0 8.87% 1647.0 7.96% IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer GAAAGTGAAAGT 1e-1 -3.971e+00 0.0737 227.0 5.43% 977.2 4.72% ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer GAGSCCGAGC 1e-1 -3.868e+00 0.0809 42.0 1.00% 148.0 0.72% Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer CACAGCAGGGGG 1e-1 -3.701e+00 0.0947 158.0 3.78% 666.5 3.22% ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer ARGAGGMCAAAATGW 1e-1 -3.688e+00 0.0950 154.0 3.68% 648.4 3.13% NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer GGGGGAATCCCC 1e-1 -3.662e+00 0.0965 35.0 0.84% 121.9 0.59% Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer AWWNTGCTGAGTCAT 1e-1 -3.613e+00 0.1004 31.0 0.74% 105.9 0.51% Unknown3/Arabidopsis-Promoters/Homer AYTAAACCGG 1e-1 -3.411e+00 0.1216 469.0 11.21% 2138.0 10.33% Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer SCTGTCAMTCAN 1e-1 -3.379e+00 0.1245 124.0 2.96% 518.6 2.51% ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer RGRACASNSTGTYCYB 1e-1 -3.187e+00 0.1494 120.0 2.87% 504.8 2.44% ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer GTGGGCCCCA 1e-1 -3.185e+00 0.1494 46.0 1.10% 173.1 0.84% AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer ATGCCCTGAGGC 1e-1 -3.013e+00 0.1744 140.0 3.35% 600.5 2.90% Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer AGGTGTGAAM 1e-1 -3.009e+00 0.1744 1036.0 24.77% 4897.4 23.67% Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer GCTATTTTTAGC 1e-1 -2.924e+00 0.1872 365.0 8.73% 1662.0 8.03% MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer GCTGASTCAGCA 1e-1 -2.889e+00 0.1922 96.0 2.30% 401.2 1.94% ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer ACAGGAAGTG 1e-1 -2.817e+00 0.2048 774.0 18.50% 3636.9 17.58% PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer ACTTTCACTTTC 1e-1 -2.800e+00 0.2064 637.0 15.23% 2974.2 14.37% ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer AACCGGAAGT 1e-1 -2.791e+00 0.2065 1090.0 26.06% 5175.7 25.01% Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer GKVTCADRTTWC 1e-1 -2.781e+00 0.2068 283.0 6.77% 1278.8 6.18% EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer VACAGGAAAT 1e-1 -2.724e+00 0.2170 448.0 10.71% 2068.8 10.00% Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) NNAYTTCCTGHN 1e-1 -2.629e+00 0.2367 667.0 15.95% 3129.5 15.12% NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer GGAAATTCCC 1e-1 -2.468e+00 0.2755 54.0 1.29% 219.8 1.06% AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer SCCTSAGGSCAW 1e-1 -2.398e+00 0.2933 212.0 5.07% 956.5 4.62% Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer GTRGGTCASTGGGTCA 1e-1 -2.387e+00 0.2940 33.0 0.79% 127.3 0.62% Sp1(Zf)/Promoter/Homer GGCCCCGCCCCC 1e-1 -2.358e+00 0.3001 46.0 1.10% 185.6 0.90% GFY(?)/Promoter/Homer ACTACAATTCCC 1e0 -2.241e+00 0.3348 33.0 0.79% 129.6 0.63% ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer SMCAGTCWGAKGGAGGAGGC 1e0 -2.122e+00 0.3739 10.0 0.24% 32.1 0.16% Unknown1/Arabidopsis-Promoters/Homer RGGGTAWWWTHGTAA 1e0 -1.959e+00 0.4367 143.0 3.42% 645.4 3.12% IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer CTTTCANTATGACTV 1e0 -1.896e+00 0.4611 172.0 4.11% 785.5 3.80% DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer TWGHWACAWTGTWDC 1e0 -1.849e+00 0.4796 338.0 8.08% 1584.6 7.66% GAGA-repeat/SacCer-Promoters/Homer CTYTCTYTCTCTCTC 1e0 -1.848e+00 0.4796 3281.0 78.44% 16094.2 77.78% Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer MYGGTCACACTG 1e0 -1.832e+00 0.4801 133.0 3.18% 602.9 2.91% ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer VAGGTCACNSTGACC 1e0 -1.800e+00 0.4920 100.0 2.39% 447.4 2.16% Unknown2/Arabidopsis-Promoters/Homer AAACGACGTCGTTTT 1e0 -1.746e+00 0.5152 39.0 0.93% 164.7 0.80% Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer CTTCCGGGAA 1e0 -1.731e+00 0.5192 426.0 10.18% 2017.8 9.75% EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer DGTCCCYRGGGA 1e0 -1.724e+00 0.5192 45.0 1.08% 192.6 0.93% Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer NRAACCRGTTYRAACCRGYT 1e0 -1.708e+00 0.5233 72.0 1.72% 318.4 1.54% Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer SCTGTCAVTCAV 1e0 -1.691e+00 0.5285 125.0 2.99% 569.9 2.75% OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer ATGAATATTCATGAG 1e0 -1.680e+00 0.5303 15.0 0.36% 57.1 0.28% ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer ATTTCCCAGVAKSCY 1e0 -1.656e+00 0.5394 102.0 2.44% 461.4 2.23% GFX(?)/Promoter/Homer ATTCTCGCGAGA 1e0 -1.613e+00 0.5591 13.0 0.31% 49.8 0.24% p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer NNDRCATGYCYNRRCATGYH 1e0 -1.591e+00 0.5672 165.0 3.94% 764.7 3.70% RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer GGGRAARRGRMCAGMTG 1e0 -1.552e+00 0.5854 121.0 2.89% 555.8 2.69% ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer GAGCCTGGTACTGWGCCTGR 1e0 -1.537e+00 0.5900 51.0 1.22% 224.8 1.09% ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer AGGCCTRG 1e0 -1.537e+00 0.5900 411.0 9.83% 1957.5 9.46% Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer CGGTCACSCCAC 1e0 -1.514e+00 0.5953 56.0 1.34% 248.8 1.20% Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer BCCATTGTTC 1e0 -1.481e+00 0.6109 1264.0 30.22% 6141.7 29.68% ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer AAGGKGRCGCAGGCA 1e0 -1.344e+00 0.6963 25.0 0.60% 107.9 0.52% GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer VAGRACAKWCTGTYC 1e0 -1.339e+00 0.6963 168.0 4.02% 790.4 3.82% RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer AGGTCAAGGTCA 1e0 -1.310e+00 0.7105 12.0 0.29% 48.9 0.24% EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer TGCAARYGCGCTCYA 1e0 -1.211e+00 0.7792 15.0 0.36% 63.0 0.30% ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer RGGGCACTAACY 1e0 -1.119e+00 0.8479 501.0 11.98% 2430.9 11.75% ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer RCAGGATGTGGT 1e0 -9.951e-01 0.9538 30.0 0.72% 138.1 0.67% THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer GGTCANYTGAGGWCA 1e0 -9.730e-01 0.9686 124.0 2.96% 595.9 2.88% ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer TGGAACAGMA 1e0 -9.641e-01 0.9709 605.0 14.46% 2957.3 14.29% E-box/Drosophila-Promoters/Homer AACAGCTGTTHN 1e0 -9.631e-01 0.9709 120.0 2.87% 576.5 2.79% T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer ACTTTCGTTTCT 1e0 -9.283e-01 0.9932 18.0 0.43% 82.5 0.40% Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer CYTGTTTACWYW 1e0 -9.258e-01 0.9932 1058.0 25.29% 5195.4 25.11% HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer BSTTCTRGAABVTTCYAGAA 1e0 -9.215e-01 0.9932 87.0 2.08% 417.6 2.02% Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer TGCTGAGTCA 1e0 -8.891e-01 1.0000 74.0 1.77% 355.7 1.72% FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer AGTAAACAAAAAAGAACAND 1e0 -8.422e-01 1.0000 95.0 2.27% 460.3 2.22% Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer CTGTCTGG 1e0 -8.339e-01 1.0000 873.0 20.87% 4295.9 20.76% SeqBias: A/T bias WWWWWWWWWW 1e0 -7.830e-01 1.0000 4182.0 99.98% 20683.3 99.95% HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer VCAGCTGBNN 1e0 -7.413e-01 1.0000 782.0 18.69% 3859.7 18.65% DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer YDGHTACAWTGTADC 1e0 -7.199e-01 1.0000 240.0 5.74% 1183.6 5.72% ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer CCTCATGGTGYCYTWYTCCCTTGTG 1e0 -7.138e-01 1.0000 16.0 0.38% 77.8 0.38% NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer WGGGGATTTCCC 1e0 -7.031e-01 1.0000 304.0 7.27% 1501.8 7.26% MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer TGCTGACTCA 1e0 -6.828e-01 1.0000 440.0 10.52% 2176.6 10.52% EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer GTCCCCWGGGGA 1e0 -6.592e-01 1.0000 212.0 5.07% 1050.5 5.08% Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer CTGGCAGSCTGCCA 1e0 -6.042e-01 1.0000 88.0 2.10% 439.4 2.12% PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer AAGAACATWHTGTTC 1e0 -6.000e-01 1.0000 200.0 4.78% 996.6 4.82% ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer GTCWGCTGTYYCTCT 1e0 -5.996e-01 1.0000 46.0 1.10% 230.9 1.12% NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer GATGACTCAGCA 1e0 -5.985e-01 1.0000 18.0 0.43% 91.0 0.44% GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATGKDGAGATAAG 1e0 -5.893e-01 1.0000 131.0 3.13% 654.8 3.16% YY1(Zf)/Promoter/Homer CAAGATGGCGGC 1e0 -5.585e-01 1.0000 49.0 1.17% 247.7 1.20% CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer CCATATATGGNM 1e0 -5.570e-01 1.0000 406.0 9.71% 2024.2 9.78% Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer VGCTGWCAVB 1e0 -4.723e-01 1.0000 1043.0 24.93% 5201.4 25.14% GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer NRGVACABNVTGTYCY 1e0 -4.374e-01 1.0000 68.0 1.63% 350.3 1.69% ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer AGGAARCAGCTG 1e0 -4.360e-01 1.0000 39.0 0.93% 203.5 0.98% Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer CYAAAAATAG 1e0 -4.129e-01 1.0000 649.0 15.52% 3257.3 15.74% FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer WAAGTAAACA 1e0 -4.116e-01 1.0000 1437.0 34.35% 7170.1 34.65% Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer GGGGCTYGKCTGGGA 1e0 -4.096e-01 1.0000 21.0 0.50% 112.2 0.54% PCF/Arabidopsis-Promoters/Homer NNWWWTGGGCYTDDN 1e0 -4.056e-01 1.0000 325.0 7.77% 1643.0 7.94% Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer GGTGYTGACAGS 1e0 -3.996e-01 1.0000 156.0 3.73% 797.6 3.85% Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer HTTTCCCASG 1e0 -3.890e-01 1.0000 895.0 21.40% 4486.5 21.68% SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer ASWTCCTGBT 1e0 -3.840e-01 1.0000 832.0 19.89% 4174.7 20.17% Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer VNRVCAGCTGGY 1e0 -3.767e-01 1.0000 510.0 12.19% 2572.4 12.43% Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer CCATTGTATGCAAAT 1e0 -3.664e-01 1.0000 222.0 5.31% 1133.3 5.48% Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer ANTTMRCASBNNNGTGYKAAN 1e0 -3.631e-01 1.0000 204.0 4.88% 1044.0 5.05% NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer CYTGGCABNSTGCCAR 1e0 -3.552e-01 1.0000 98.0 2.34% 509.2 2.46% p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer ACATGCCCGGGCAT 1e0 -3.528e-01 1.0000 1.0 0.02% 6.8 0.03% ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer AACATCTGGA 1e0 -3.514e-01 1.0000 215.0 5.14% 1100.5 5.32% Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer BAACAGCTGT 1e0 -3.480e-01 1.0000 278.0 6.65% 1417.7 6.85% PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer NGTGTTCAVTSAAGCGKAAA 1e0 -3.462e-01 1.0000 76.0 1.82% 398.1 1.92% Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer NNNVCTGWGYAAACASN 1e0 -3.455e-01 1.0000 824.0 19.70% 4144.5 20.03% SeqBias: GCW-triplet GCWGCWGCWGCW 1e0 -3.398e-01 1.0000 4178.0 99.88% 20670.8 99.89% LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer RGGTTACTANAGGTCA 1e0 -3.148e-01 1.0000 19.0 0.45% 106.4 0.51% ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer AGAAATGACTTCCCT 1e0 -2.636e-01 1.0000 3.0 0.07% 20.7 0.10% ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer ACVAGGAAGT 1e0 -2.231e-01 1.0000 696.0 16.64% 3542.9 17.12% GFY-Staf(?,Zf)/Promoter/Homer RACTACAATTCCCAGAAKGC 1e0 -2.212e-01 1.0000 10.0 0.24% 62.1 0.30% SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer CCAAAAAGGG 1e0 -2.141e-01 1.0000 2051.0 49.03% 10282.1 49.69% SeqBias: polyA-repeat AAAAAAAAAA 1e0 -2.022e-01 1.0000 4183.0 100.00% 20692.4 100.00% SeqBias: C/A-bias MMMMMMMMMM 1e0 -2.022e-01 1.0000 4183.0 100.00% 20692.4 100.00% SeqBias: G/A bias RRRRRRRRRR 1e0 -2.022e-01 1.0000 4183.0 100.00% 20691.7 100.00% Ik-1 NHTTGGGAATRCC 1e0 -2.022e-01 1.0000 4183.0 100.00% 20692.4 100.00% NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer SARTGGAAAAWRTGAGTCAB 1e0 -1.868e-01 1.0000 164.0 3.92% 870.3 4.21% bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer NAGTTTCABTHTGACTNW 1e0 -1.838e-01 1.0000 516.0 12.34% 2653.7 12.82% MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer AACAGCTG 1e0 -1.787e-01 1.0000 375.0 8.96% 1944.6 9.40% RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer SAAACCACAG 1e0 -1.760e-01 1.0000 521.0 12.46% 2681.2 12.96% Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer VBSYGTCTGG 1e0 -1.736e-01 1.0000 847.0 20.25% 4317.3 20.86% TATA-Box(TBP)/Promoter/Homer CCTTTTAWAGSC 1e0 -1.628e-01 1.0000 1649.0 39.42% 8317.5 40.20% OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATWATTCATGA 1e0 -1.533e-01 1.0000 34.0 0.81% 199.3 0.96% SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer TWCCAWWTWTGG 1e0 -1.382e-01 1.0000 693.0 16.57% 3562.1 17.21% Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer CVGTSCTCCC 1e0 -1.379e-01 1.0000 614.0 14.68% 3165.7 15.30% FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WAAGTAAACA 1e0 -1.266e-01 1.0000 1643.0 39.28% 8310.3 40.16% FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer WWTRTAAACAVG 1e0 -1.249e-01 1.0000 1411.0 33.73% 7158.9 34.60% CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer NTNATGCAAYMNNHTGMAAY 1e0 -1.193e-01 1.0000 203.0 4.85% 1088.4 5.26% PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer GGAAGTGAAAST 1e0 -1.115e-01 1.0000 167.0 3.99% 905.2 4.37% Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer TATGCWAATBAV 1e0 -1.047e-01 1.0000 389.0 9.30% 2045.0 9.88% OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAACAATG 1e0 -1.005e-01 1.0000 305.0 7.29% 1618.1 7.82% IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer GAAASYGAAASY 1e0 -9.749e-02 1.0000 128.0 3.06% 707.0 3.42% NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer ATTTTCCATT 1e0 -9.033e-02 1.0000 1258.0 30.07% 6422.1 31.04% STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer RTTTCTNAGAAA 1e0 -8.410e-02 1.0000 312.0 7.46% 1662.2 8.03% RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer TGCATGCA 1e0 -8.197e-02 1.0000 1564.0 37.39% 7954.7 38.44% Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATATTC 1e0 -8.074e-02 1.0000 165.0 3.94% 906.2 4.38% MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer HWWGTCAGCAWWTTT 1e0 -8.042e-02 1.0000 375.0 8.96% 1986.9 9.60% Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer NNVVCAGCTGBN 1e0 -7.920e-02 1.0000 600.0 14.34% 3129.9 15.13% Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer YCTTTGTTCC 1e0 -7.840e-02 1.0000 911.0 21.78% 4696.8 22.70% Unknown3/Drosophila-Promoters/Homer ACVAKCTGGCAGCGC 1e0 -7.769e-02 1.0000 32.0 0.77% 200.4 0.97% NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WNTGTTTRYTTTGGCA 1e0 -7.748e-02 1.0000 57.0 1.36% 337.8 1.63% PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer AGAGGAAGTG 1e0 -7.628e-02 1.0000 244.0 5.83% 1317.0 6.36% Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer RAACAATGGN 1e0 -7.471e-02 1.0000 1391.0 33.25% 7100.6 34.31% RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer NWAACCACADNN 1e0 -7.420e-02 1.0000 603.0 14.42% 3148.0 15.21% Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer MAATCACTGC 1e0 -6.787e-02 1.0000 432.0 10.33% 2286.0 11.05% ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer GARTGGTCATCGCCC 1e0 -6.678e-02 1.0000 40.0 0.96% 247.9 1.20% Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer GCTATTTTTGGM 1e0 -5.878e-02 1.0000 1287.0 30.77% 6599.9 31.89% E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer DNRCAGCTGY 1e0 -5.742e-02 1.0000 527.0 12.60% 2777.9 13.42% EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer AVCAGGAAGT 1e0 -5.715e-02 1.0000 1151.0 27.52% 5921.8 28.62% JunD(bZIP)/K562-JunD-ChIP-Seq/Homer ATGACGTCATCN 1e0 -5.633e-02 1.0000 40.0 0.96% 250.8 1.21% LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer CARTGGAGCGCRYTTGCATT 1e0 -5.546e-02 1.0000 2.0 0.05% 23.3 0.11% Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCHGATTAC 1e0 -5.380e-02 1.0000 58.0 1.39% 350.7 1.69% Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer HTGCTGAGTCAT 1e0 -5.320e-02 1.0000 9.0 0.22% 71.4 0.35% STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer NATTTCCNGGAAAT 1e0 -5.265e-02 1.0000 337.0 8.06% 1811.3 8.75% Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer NAACAGCTGG 1e0 -4.868e-02 1.0000 356.0 8.51% 1912.5 9.24% NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer GCCATCTGTT 1e0 -4.714e-02 1.0000 353.0 8.44% 1898.6 9.18% HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer TTCTAGAABNTTCTA 1e0 -4.709e-02 1.0000 192.0 4.59% 1065.5 5.15% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e0 -4.534e-02 1.0000 90.0 2.15% 527.5 2.55% ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer WDNCTGGGCA 1e0 -3.992e-02 1.0000 366.0 8.75% 1972.8 9.53% Unknown4/Drosophila-Promoters/Homer AAAAATACCRMA 1e0 -3.264e-02 1.0000 343.0 8.20% 1862.5 9.00% Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer RTCACSCCAY 1e0 -3.221e-02 1.0000 100.0 2.39% 589.5 2.85% Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer AGGVNCCTTTGT 1e0 -2.898e-02 1.0000 746.0 17.83% 3925.6 18.97% ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer AGTTTCASTTTC 1e0 -2.716e-02 1.0000 63.0 1.51% 391.9 1.89% FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer TRTTTACTTW 1e0 -2.533e-02 1.0000 1300.0 31.08% 6721.0 32.48% Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer MTGATGCAAT 1e0 -2.529e-02 1.0000 486.0 11.62% 2608.4 12.61% ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer GNCTGTASTRNTGBCTCHTT 1e0 -2.495e-02 1.0000 14.0 0.33% 110.1 0.53% Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer CTGTTTAC 1e0 -2.450e-02 1.0000 1711.0 40.90% 8773.2 42.40% Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCAATTA 1e0 -2.376e-02 1.0000 236.0 5.64% 1318.1 6.37% Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer TGATTRATGGCY 1e0 -2.089e-02 1.0000 235.0 5.62% 1317.8 6.37% CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer TGCAGTTCCMVNWRTGGCCA 1e0 -2.071e-02 1.0000 3.0 0.07% 37.6 0.18% Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGCATAATTCA 1e0 -1.953e-02 1.0000 697.0 16.66% 3697.9 17.87% PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer ACCRTGACTAATTNN 1e0 -1.828e-02 1.0000 299.0 7.15% 1656.6 8.01% Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer GGTTAAWCATTAA 1e0 -1.778e-02 1.0000 215.0 5.14% 1217.3 5.88% Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer DCYAAAAATAGM 1e0 -1.457e-02 1.0000 737.0 17.62% 3915.6 18.92% Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer NGRTGACGTCAY 1e0 -1.251e-02 1.0000 397.0 9.49% 2179.5 10.53% Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer KTGACCTTGA 1e0 -1.221e-02 1.0000 403.0 9.63% 2211.3 10.69% ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer GRTGMTRGAGCC 1e0 -1.216e-02 1.0000 210.0 5.02% 1202.2 5.81% Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer VCAGCTGYTG 1e0 -1.146e-02 1.0000 325.0 7.77% 1808.3 8.74% c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer ATGACGTCATCY 1e0 -1.085e-02 1.0000 175.0 4.18% 1020.0 4.93% HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer GYCATCMATCAT 1e0 -1.076e-02 1.0000 132.0 3.16% 788.2 3.81% STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer TTCCKNAGAA 1e0 -9.824e-03 1.0000 658.0 15.73% 3531.8 17.07% GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NAGATWNBNATCTNN 1e0 -8.130e-03 1.0000 105.0 2.51% 647.1 3.13% FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer AGGTCANTGACCTB 1e0 -7.636e-03 1.0000 151.0 3.61% 899.2 4.35% AARE(HLH)/mES-cMyc-ChIP-Seq/Homer GATTGCATCA 1e0 -7.414e-03 1.0000 135.0 3.23% 814.0 3.93% Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer NTAATTDGCYAATTANNWWD 1e0 -7.405e-03 1.0000 61.0 1.46% 403.1 1.95% Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer CAAAGGTCAG 1e0 -6.851e-03 1.0000 996.0 23.81% 5266.7 25.45% Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer NNTGTGGATTSS 1e0 -6.272e-03 1.0000 740.0 17.69% 3970.9 19.19% Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer TGACCTTTNCNT 1e0 -5.826e-03 1.0000 167.0 3.99% 992.6 4.80% Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer NAHCAGCTGD 1e0 -5.708e-03 1.0000 428.0 10.23% 2369.7 11.45% TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer ACWTCAAAGG 1e0 -5.631e-03 1.0000 78.0 1.86% 505.0 2.44% RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer GCTGTGGTTW 1e0 -4.770e-03 1.0000 416.0 9.95% 2313.9 11.18% VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer ARAGGTCANWGAGTTCANNN 1e0 -4.478e-03 1.0000 69.0 1.65% 458.0 2.21% ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer YTKGATAHAGTATTCTWGGTNGGCA 1e0 -3.802e-03 1.0000 89.0 2.13% 573.1 2.77% EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer ATTTCCTGTN 1e0 -3.729e-03 1.0000 590.0 14.10% 3223.5 15.58% PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer ADGGYAGYAGCATCT 1e0 -3.425e-03 1.0000 366.0 8.75% 2063.3 9.97% PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer RGGTCTCTAACY 1e0 -3.281e-03 1.0000 177.0 4.23% 1060.1 5.12% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer AGGTCAAGGTCA 1e0 -2.970e-03 1.0000 37.0 0.88% 276.8 1.34% Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer ATTGCATCAT 1e0 -2.816e-03 1.0000 353.0 8.44% 2001.3 9.67% Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer WATGCAAATGAG 1e0 -1.590e-03 1.0000 498.0 11.91% 2778.6 13.43% Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer NRRTGACGTCAT 1e0 -1.587e-03 1.0000 210.0 5.02% 1256.6 6.07% Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer SAGATAAGRV 1e0 -1.402e-03 1.0000 781.0 18.67% 4243.5 20.51% MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer RRCAGCTGYTSY 1e0 -6.650e-04 1.0000 287.0 6.86% 1692.7 8.18% E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer NVCACCTGBN 1e0 -6.130e-04 1.0000 586.0 14.01% 3268.0 15.79% Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer ACAGCTGTTN 1e0 -5.760e-04 1.0000 1128.0 26.97% 6047.2 29.22% Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAW 1e0 -5.010e-04 1.0000 640.0 15.30% 3555.5 17.18% Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer ATATGCAAAT 1e0 -4.990e-04 1.0000 430.0 10.28% 2459.1 11.88% Unknown2/Drosophila-Promoters/Homer CATCMCTA 1e0 -4.090e-04 1.0000 668.0 15.97% 3707.0 17.91% GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATSTNDNNDSAGATAASN 1e0 -3.630e-04 1.0000 82.0 1.96% 572.4 2.77% Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer KBCTACCTGW 1e0 -2.880e-04 1.0000 274.0 6.55% 1643.3 7.94% Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer BBCTTATCTS 1e0 -2.150e-04 1.0000 898.0 21.47% 4914.9 23.75% HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer RACAGCTGTTBH 1e0 -1.740e-04 1.0000 514.0 12.29% 2933.0 14.17% PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer VAGRACAKNCTGTBC 1e0 -1.080e-04 1.0000 1479.0 35.36% 7886.9 38.11% RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer AAACCACARM 1e0 -8.300e-05 1.0000 701.0 16.76% 3931.4 19.00% ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer NGNTCTAGAACCNGV 1e0 -4.700e-05 1.0000 195.0 4.66% 1249.8 6.04% Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer NYTAATCCYB 1e0 -3.400e-05 1.0000 900.0 21.52% 4988.9 24.11% Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer RCCATMTGTT 1e0 -2.500e-05 1.0000 1327.0 31.72% 7175.6 34.68% Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer BTCAAGGTCA 1e0 -1.100e-05 1.0000 250.0 5.98% 1582.3 7.65% Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer ACTYKNATTCGTGNTACTTC 1e0 -9.000e-06 1.0000 43.0 1.03% 380.0 1.84% SeqBias: CG bias SSSSSSSSSS 1e0 -5.000e-06 1.0000 3392.0 81.09% 17308.2 83.64% CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer DRTGTTGCAA 1e0 -3.000e-06 1.0000 1070.0 25.58% 5943.0 28.72% Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGMATATDC 1e0 -2.000e-06 1.0000 1762.0 42.12% 9441.3 45.63% Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer SVYTTCCNGGAARB 1e0 -2.000e-06 1.0000 526.0 12.57% 3113.4 15.05% BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer NHAACBGYYV 1e0 -2.000e-06 1.0000 1886.0 45.09% 10064.6 48.64% STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer ABTTCYYRRGAA 1e0 -1.000e-06 1.0000 635.0 15.18% 3702.3 17.89% Unknown4/Arabidopsis-Promoters/Homer CKTCKTCTTY 1e0 -1.000e-06 1.0000 1318.0 31.51% 7227.0 34.93% Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer RRSCACTYAA 1e0 -1.000e-06 1.0000 1576.0 37.68% 8546.2 41.30% Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer BTCAAGGTCA 1e0 -1.000e-06 1.0000 371.0 8.87% 2303.0 11.13% Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer TAATTAGN 1e0 -1.000e-06 1.0000 1677.0 40.09% 9054.8 43.76% TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer CCWGGAATGY 1e0 -0.000e+00 1.0000 300.0 7.17% 1925.1 9.30% Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer BTBRAGTGSN 1e0 -0.000e+00 1.0000 1329.0 31.77% 7328.1 35.41% HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer CARRGKBCAAAGTYCA 1e0 -0.000e+00 1.0000 172.0 4.11% 1204.6 5.82% Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer CCWTTGTYYB 1e0 -0.000e+00 1.0000 1621.0 38.75% 8810.0 42.58% TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer CCWGGAATGY 1e0 -0.000e+00 1.0000 578.0 13.82% 3448.3 16.66% Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer GATGACGTCA 1e0 -0.000e+00 1.0000 798.0 19.08% 4622.9 22.34% Unknown5/Drosophila-Promoters/Homer GCTGATAASV 1e0 -0.000e+00 1.0000 805.0 19.24% 4659.5 22.52% DREF/Drosophila-Promoters/Homer AVYTATCGATAD 1e0 -0.000e+00 1.0000 73.0 1.75% 622.4 3.01% CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer ATTGCGCAAC 1e0 -0.000e+00 1.0000 1198.0 28.64% 6705.3 32.40% GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NNNNNBAGATAWYATCTVHN 1e0 -0.000e+00 1.0000 134.0 3.20% 1003.4 4.85% Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer NNNCTTTCCAGGAAA 1e0 -0.000e+00 1.0000 983.0 23.50% 5603.0 27.08% Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer SSCMATWAAA 1e0 -0.000e+00 1.0000 931.0 22.26% 5336.4 25.79% Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer CCATTGTTNY 1e0 -0.000e+00 1.0000 2054.0 49.10% 11013.2 53.22% caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer GGYCATAAAW 1e0 -0.000e+00 1.0000 1443.0 34.50% 7976.6 38.55% HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer GGCCATAAATCA 1e0 -0.000e+00 1.0000 978.0 23.38% 5620.0 27.16% STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer NYTTCCWGGAAR 1e0 -0.000e+00 1.0000 927.0 22.16% 5373.2 25.97% Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer GYMATAAAAH 1e0 -0.000e+00 1.0000 1223.0 29.24% 6907.8 33.38% HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer TTTTATKRGG 1e0 -0.000e+00 1.0000 1601.0 38.27% 8828.0 42.66% PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer KTGTTTGC 1e0 -0.000e+00 1.0000 2840.0 67.89% 14890.2 71.96% Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer AAGCACTTAA 1e0 -0.000e+00 1.0000 1706.0 40.78% 9381.1 45.34% Tal1 CATCTG 1e0 -0.000e+00 1.0000 823.0 19.67% 4861.4 23.49% Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer YTAATYNRATTA 1e0 -0.000e+00 1.0000 687.0 16.42% 4149.9 20.06% Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer TWGTCTGV 1e0 -0.000e+00 1.0000 1378.0 32.94% 7754.0 37.47% HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer NCYAATAAAA 1e0 -0.000e+00 1.0000 1614.0 38.58% 8971.1 43.35% Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer NNYTAATTAR 1e0 -0.000e+00 1.0000 1677.0 40.09% 9289.8 44.89% ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer AWTGATAAGA 1e0 -0.000e+00 1.0000 798.0 19.08% 4775.2 23.08% Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer CCWTTGTY 1e0 -0.000e+00 1.0000 1894.0 45.28% 10377.8 50.15% AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer TGGCAGTTGG 1e0 -0.000e+00 1.0000 1582.0 37.82% 8824.6 42.65% Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer TTRAGTGSYK 1e0 -0.000e+00 1.0000 1482.0 35.43% 8320.7 40.21% Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer ASATCAAAGGVA 1e0 -0.000e+00 1.0000 482.0 11.52% 3084.0 14.90% NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer YTGCCAAG 1e0 -0.000e+00 1.0000 1104.0 26.39% 6392.6 30.89% PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer ACTGATAAGA 1e0 -0.000e+00 1.0000 640.0 15.30% 3950.2 19.09% IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer ACTGAAACCA 1e0 -0.000e+00 1.0000 437.0 10.45% 2844.8 13.75% GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer AAACYKGTTWDACMRGTTTB 1e0 -0.000e+00 1.0000 261.0 6.24% 1872.2 9.05% Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer YCATYAATCA 1e0 -0.000e+00 1.0000 1266.0 30.27% 7291.2 35.24% GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer RGGATTAR 1e0 -0.000e+00 1.0000 1371.0 32.78% 7831.4 37.85% Initiator/Drosophila-Promoters/Homer NTCAGTYG 1e0 -0.000e+00 1.0000 1686.0 40.31% 9449.6 45.67% Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer ATTAACACCT 1e0 -0.000e+00 1.0000 1910.0 45.66% 10568.0 51.07% Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer GGCCATAAATCA 1e0 -0.000e+00 1.0000 732.0 17.50% 4532.8 21.91% Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer AGGTGTCA 1e0 -0.000e+00 1.0000 1957.0 46.78% 10836.5 52.37% AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer CCAGGAACAG 1e0 -0.000e+00 1.0000 1936.0 46.28% 10733.6 51.87% Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer NBWGATAAGR 1e0 -0.000e+00 1.0000 1394.0 33.33% 8013.2 38.72% LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer ADAAATATCT 1e0 -0.000e+00 1.0000 1724.0 41.21% 9683.7 46.80% MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer GGCVGTTR 1e0 -0.000e+00 1.0000 2182.0 52.16% 11964.1 57.82% NFY(CCAAT)/Promoter/Homer RGCCAATSRG 1e0 -0.000e+00 1.0000 931.0 22.26% 5641.4 27.26% Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer ASWTCAAAGG 1e0 -0.000e+00 1.0000 245.0 5.86% 1853.1 8.96% SeqBias: GA-repeat GAGAGAGAGA 1e0 -0.000e+00 1.0000 3568.0 85.30% 18467.0 89.24% PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer HAATAAAGNN 1e0 -0.000e+00 1.0000 2650.0 63.35% 14300.1 69.11% LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer ATGATTRATG 1e0 -0.000e+00 1.0000 1852.0 44.27% 10462.5 50.56% CHR(?)/Hela-CellCycle-Expression/Homer SRGTTTCAAA 1e0 0.000e+00 1.0000 851.0 20.34% 5923.4 28.63% CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer GCTAATCC 1e0 0.000e+00 1.0000 2293.0 54.82% 12704.4 61.40% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer RGGTCADNNAGAGGTCAV 1e0 0.000e+00 1.0000 0.0 0.00% 12.3 0.06% GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATAASR 1e0 0.000e+00 1.0000 2004.0 47.91% 11579.9 55.96% HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer NTATYGATCH 1e0 0.000e+00 1.0000 1145.0 27.37% 6978.1 33.72% Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer CTAATKGV 1e0 0.000e+00 1.0000 2111.0 50.47% 11797.2 57.01% Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer ADBTAATTAR 1e0 0.000e+00 1.0000 2278.0 54.46% 12842.0 62.06% Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer RGCCATTAAC 1e0 0.000e+00 1.0000 3155.0 75.42% 18181.0 87.86% Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer RSCACTYRAG 1e0 0.000e+00 1.0000 1869.0 44.68% 10682.3 51.62% Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer GKTAATGR 1e0 0.000e+00 1.0000 3172.0 75.83% 17550.5 84.81% Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer TAATCCCN 1e0 0.000e+00 1.0000 3097.0 74.04% 17851.7 86.27% REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer GGMGCTGTCCATGGTGCTGA 1e0 0.000e+00 1.0000 0.0 0.00% 1.2 0.01% SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer AVCAGCTG 1e0 0.000e+00 1.0000 1944.0 46.47% 12136.3 58.65% TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer YCWGGAATGY 1e0 0.000e+00 1.0000 458.0 10.95% 3307.4 15.98% Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer YTGWCADY 1e0 0.000e+00 1.0000 2219.0 53.05% 12679.3 61.27% Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer TGTCANYT 1e0 0.000e+00 1.0000 2338.0 55.89% 13008.5 62.87% ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer GGGTTTTGAAGGATGARTAGGAGTT 1e0 0.000e+00 1.0000 0.0 0.00% 1.0 0.00% ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer MACCTTCYATGGCTCCCTAKTGCCY 1e0 0.000e+00 1.0000 0.0 0.00% 1.2 0.01% SeqBias: CA-repeat CACACACACA 1e0 0.000e+00 1.0000 3050.0 72.91% 16755.0 80.97% SeqBias: polyC-repeat CCCCCCCCCC 1e0 0.000e+00 1.0000 4121.0 98.52% 20659.7 99.84% Unknown6/Drosophila-Promoters/Homer AATTTTAAAA 1e0 0.000e+00 1.0000 1298.0 31.03% 7831.1 37.84% KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer ARGAATAWWN 1e0 0.000e+00 1.0000 2089.0 49.94% 11828.5 57.16% CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer AAATTSAATTTN 1e0 0.000e+00 1.0000 978.0 23.38% 6062.9 29.30% EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer ATTTAATGGG 1e0 0.000e+00 1.0000 1911.0 45.68% 11162.7 53.95%